Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001307.1

Orthogroup ID

OG0007060

Physical Location & Seq

Genomic Coordinates Reverse (-)

44577 .. 49596

Gene Structure 5020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001307.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgcctcgtgatttggcgcgctcagaatcacgatcgccgtctcgcaataggaggaggcgttccccgtctccggcggtgggccataggtacagcaagagaagccgaagggacagaagcagccgctctccctattcctcctcatattctcatagcagacgcaaaagtcgctctccaactccgagacgtcgtaaaagtcgctctccaactccaagacgtcgtaaaagtcgttctccaactccaaggcatcgtaaaagtctctctccaactccaaagcgtcggaaaagtcgctctccaattttgaaacgttataggaggcagagaagtaggagctcttcattgtctcctgttcacaaatctcctacttcaagtctcggatcattggagaagaaaaatgcaagtgaaaaattaagaaaggaagaggaagaacagaagaaaaggcgacaacatgaagcagaattgaagctcatagaagaagagacctcaaaaagagtggaagaagcaattcagcggaaagttgaggagagcttgaattctgaggagattaaagtagaaatacagacgcggatggaggagggacgaaagaagctactaaatgaagttgcagctcaacttgagaaggaaaaggaagcagctgttattgaggctagacagaaggaggaacaagcccagaaagagaaagaagagctagaagggatgcttgaagagactcagagaagggtagaagaagctcaaagaagggaagctttggagcagcagaggagggaggaggagcggtacagagagctagaagagctccagagacaaaaggaagaggcgatgcgaaggaagaaacaagaggaggaggaacagcggtctaaccaaatgaagctgttggtcagttctcaattgtttgcgtccttccctctaagcctatgtgagagcaacaaagaaaggcttcagtcttgtattggtatttggcttggccaggagttaccaggcggctcagagcttgagttgggagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARGLU

Protein Analysis

334

Amino Acids

39.58

Weight (kDa)

10.4

Isoelectric Point (pI)

125.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10890 AT1G10890 AT1G10890 AT1G10890
fragaria_vesca	FvH4_3g26951
malus_domestica	MD08G1229300.v1.1 MD08G1229400.v1.1 MD15G1423300.v1.1
prunus_persica	Prupe.1G568600_v2.0.a1 Prupe.1G568600_v2.0.a1 Prupe.1G568600_v2.0.a1 Prupe.1G568600_v2.0.a1
pyrus_communis	pycom08g19970
rosa_chinensis	RchiOBHm_Chr5g0049401
rosa_laevigata	RLG00000034617
rosa_multiflora	Rmu_sc0001307.1_g000007 Rmu_sc0014052.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032290
rosa_rugosa	Rorug05G0248300 Rorug05G0248400
rosa_samantha	Rh5AG324700 Rh5BG335700 Rh5CG360500 Rh5DG348100
rosa_wichuraiana	Rw5G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AatII	GACGTC	2 cut(s)	187, 217
AccBSI	CCGCTC	2 cut(s)	123, 772
AccII	CGCG	2 cut(s)	19, 562
AciI	CCGC	7 cut(s)	74, 121, 508, 562, 772, 850, 978
AclI	AACGTT	1 cut(s)	304
AclWI	GGATC	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	961
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	920
AcyI	GRCGYC	2 cut(s)	184, 214
AfaI	GTAC	2 cut(s)	89, 776
AfiI	CCNNNNNNNGG	2 cut(s)	70, 77
AgsI	TTSAA	5 cut(s)	301, 366, 460, 529, 701
AjnI	CCWGG	2 cut(s)	963, 973
AloI	GAACNNNNNNTCC	2 cut(s)	43, 75
Alw21I	GWGCWC	2 cut(s)	332, 795
Alw26I	GTCTC	9 cut(s)	45, 72, 175, 260, 345, 374, 470, 698, 793
AlwI	GGATC	1 cut(s)	382
AoxI	GGCC	2 cut(s)	79, 961
ApeKI	GCWGC	4 cut(s)	117, 602, 629, 751
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	2 cut(s)	501, 933
AspLEI	GCGC	2 cut(s)	19, 21
AspS9I	GGNCC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	963
BanII	GRGCYC	2 cut(s)	332, 795
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	2 cut(s)	332, 795
BbvI	GCAGC	4 cut(s)	129, 614, 641, 763
BccI	CCATC	1 cut(s)	559
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	965, 975
BcoDI	GTCTC	9 cut(s)	45, 72, 175, 260, 345, 374, 470, 698, 793
BfaI	CTAG	3 cut(s)	645, 686, 785
BisI	GCNGC	6 cut(s)	118, 121, 603, 630, 752, 979
BlsI	GCNGC	6 cut(s)	119, 122, 604, 631, 753, 980
Bme1390I	CCNGG	2 cut(s)	965, 975
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	965, 975
BmsI	GCATC	3 cut(s)	253, 684, 807
BpmI	CTGGAG	1 cut(s)	779
BpuEI	CTTGAG	1 cut(s)	632
BsaHI	GRCGYC	2 cut(s)	184, 214
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 758, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 77
BseBI	CCWGG	2 cut(s)	965, 975
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	2 cut(s)	570, 699
BseLI	CCNNNNNNNGG	2 cut(s)	70, 77
BseMII	CTCAG	4 cut(s)	36, 525, 722, 996
BsePI	GCGCGC	1 cut(s)	17
BseXI	GCAGC	4 cut(s)	129, 614, 641, 763
Bsh1236I	CGCG	2 cut(s)	19, 562
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	81, 963
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	332, 795
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	122, 588
BslI	CCNNNNNNNGG	2 cut(s)	70, 77
BsmAI	GTCTC	9 cut(s)	45, 72, 175, 260, 345, 374, 470, 698, 793
BsmBI	CGTCTC	3 cut(s)	45, 72, 175
BsmFI	GGGAC	2 cut(s)	122, 588
BsnI	GGCC	2 cut(s)	81, 963
Bso31I	GGTCTC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	332, 795
Bsp143I	GATC	2 cut(s)	32, 374
BspACI	CCGC	7 cut(s)	74, 121, 508, 562, 772, 850, 978
BspANI	GGCC	2 cut(s)	81, 963
BspCNI	CTCAG	4 cut(s)	35, 526, 721, 995
BspFNI	CGCG	2 cut(s)	19, 562
BspPI	GGATC	1 cut(s)	382
BspQI	GCTCTTC	3 cut(s)	337, 675, 783
BspTNI	GGTCTC	1 cut(s)	470
BsrBI	CCGCTC	2 cut(s)	123, 772
BssECI	CCNNGG	1 cut(s)	239
BssHII	GCGCGC	1 cut(s)	17
BssMI	GATC	2 cut(s)	32, 374
BssNI	GRCGYC	2 cut(s)	184, 214
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	965, 975
Bst6I	CTCTTC	7 cut(s)	337, 411, 468, 675, 696, 783, 804
BstACI	GRCGYC	2 cut(s)	184, 214
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	5 cut(s)	22, 534, 708, 905, 982
BstF5I	GGATG	2 cut(s)	570, 699
BstFNI	CGCG	2 cut(s)	19, 562
BstHHI	GCGC	2 cut(s)	19, 21
BstKTI	GATC	2 cut(s)	35, 377
BstMAI	GTCTC	9 cut(s)	45, 72, 175, 260, 345, 374, 470, 698, 793
BstMBI	GATC	2 cut(s)	32, 374
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 165, 790
BstNI	CCWGG	2 cut(s)	965, 975
BstSCI	CCNGG	2 cut(s)	963, 973
BstUI	CGCG	2 cut(s)	19, 562
BstV1I	GCAGC	4 cut(s)	129, 614, 641, 763
BsuRI	GGCC	2 cut(s)	81, 963
BtgZI	GCGATG	1 cut(s)	830
BtsCI	GGATG	2 cut(s)	570, 699
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	2 cut(s)	19, 21
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	4 cut(s)	165, 263, 568, 882
Csp6I	GTAC	2 cut(s)	88, 775
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	1 cut(s)	446
CviQI	GTAC	2 cut(s)	88, 775
DdeI	CTNAG	5 cut(s)	22, 534, 708, 905, 982
DpnI	GATC	2 cut(s)	34, 376
DpnII	GATC	2 cut(s)	32, 374
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	961
Eam1104I	CTCTTC	7 cut(s)	337, 411, 468, 675, 696, 783, 804
EarI	CTCTTC	7 cut(s)	337, 411, 468, 675, 696, 783, 804
Ecl136II	GAGCTC	2 cut(s)	330, 793
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	2 cut(s)	332, 795
Eco31I	GGTCTC	1 cut(s)	470
Eco53kI	GAGCTC	2 cut(s)	330, 793
Eco57I	CTGAAG	1 cut(s)	920
EcoICRI	GAGCTC	2 cut(s)	330, 793
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	963, 973
EcoT14I	CCWWGG	1 cut(s)	239
EcoT38I	GRGCYC	2 cut(s)	332, 795
ErhI	CCWWGG	1 cut(s)	239
Esp3I	CGTCTC	3 cut(s)	45, 72, 175
FaeI	CATG	1 cut(s)	449
FaiI	YATR	7 cut(s)	84, 142, 150, 309, 447, 467, 913
FalI	AAGNNNNNCTT	6 cut(s)	681, 713, 727, 759, 918, 950
FaqI	GGGAC	2 cut(s)	122, 588
FatI	CATG	1 cut(s)	445
Fnu4HI	GCNGC	6 cut(s)	118, 121, 603, 630, 752, 979
FokI	GGATG	2 cut(s)	577, 706
FriOI	GRGCYC	2 cut(s)	332, 795
Fsp4HI	GCNGC	6 cut(s)	118, 121, 603, 630, 752, 979
FspBI	CTAG	3 cut(s)	645, 686, 785
GlaI	GCGC	2 cut(s)	18, 20
GluI	GCNGC	6 cut(s)	118, 121, 603, 630, 752, 979
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	2 cut(s)	81, 963
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	4 cut(s)	165, 263, 568, 882
HhaI	GCGC	2 cut(s)	19, 21
Hin1I	GRCGYC	2 cut(s)	184, 214
Hin1II	CATG	1 cut(s)	449
Hin6I	GCGC	2 cut(s)	17, 19
HinP1I	GCGC	2 cut(s)	17, 19
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	2 cut(s)	26, 706
HpaII	CCGG	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	7 cut(s)	25, 180, 279, 374, 535, 711, 985
Hpy188III	TCNNGA	3 cut(s)	8, 30, 796
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	3 cut(s)	189, 219, 279
HpyAV	CCTTC	8 cut(s)	99, 610, 646, 683, 708, 729, 816, 907
HpyCH4IV	ACGT	3 cut(s)	184, 214, 304
HpyCH4V	TGCA	2 cut(s)	395, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 165, 790
HpyF3I	CTNAG	5 cut(s)	22, 534, 708, 905, 982
HpySE526I	ACGT	3 cut(s)	184, 214, 304
Hsp92I	GRCGYC	2 cut(s)	184, 214
Hsp92II	CATG	1 cut(s)	449
HspAI	GCGC	2 cut(s)	17, 19
Kzo9I	GATC	2 cut(s)	32, 374
LguI	GCTCTTC	3 cut(s)	337, 675, 783
LmnI	GCTCC	4 cut(s)	327, 748, 769, 798
LpnPI	CCDG	8 cut(s)	84, 357, 680, 809, 950, 960, 977, 987
Lsp1109I	GCAGC	4 cut(s)	129, 614, 641, 763
LweI	GCATC	3 cut(s)	253, 684, 807
MaeI	CTAG	3 cut(s)	645, 686, 785
MaeII	ACGT	3 cut(s)	184, 214, 304
MaeIII	GTNAC	1 cut(s)	969
MalI	GATC	2 cut(s)	34, 376
MbiI	CCGCTC	2 cut(s)	123, 772
MboI	GATC	2 cut(s)	32, 374
MfeI	CAATTG	1 cut(s)	884
MhlI	GDGCHC	2 cut(s)	332, 795
MlsI	TGGCCA	1 cut(s)	963
MluCI	AATT	6 cut(s)	294, 404, 455, 501, 529, 884
MluNI	TGGCCA	1 cut(s)	963
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	5 cut(s)	197, 227, 257, 257, 287
Mox20I	TGGCCA	1 cut(s)	963
MroXI	GAANNNNTTC	2 cut(s)	501, 933
MscI	TGGCCA	1 cut(s)	963
MseI	TTAA	2 cut(s)	407, 543
Msp20I	TGGCCA	1 cut(s)	963
MspA1I	CMGCKG	3 cut(s)	508, 632, 850
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	965, 975
MunI	CAATTG	1 cut(s)	884
MvaI	CCWGG	2 cut(s)	965, 975
MvnI	CGCG	2 cut(s)	19, 562
MwoI	GCNNNNNNNGC	3 cut(s)	99, 165, 790
NdeII	GATC	2 cut(s)	32, 374
NlaIII	CATG	1 cut(s)	449
PauI	GCGCGC	1 cut(s)	17
PciSI	GCTCTTC	3 cut(s)	337, 675, 783
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PdmI	GAANNNNTTC	2 cut(s)	501, 933
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	6 cut(s)	119, 122, 604, 631, 753, 980
Ple19I	CGATCG	1 cut(s)	35
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
Psp124BI	GAGCTC	2 cut(s)	332, 795
Psp1406I	AACGTT	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	963, 973
PspGI	CCWGG	2 cut(s)	963, 973
PspPI	GGNCC	1 cut(s)	79
PsrI	GAACNNNNNNTAC	2 cut(s)	211, 243
PteI	GCGCGC	1 cut(s)	17
PvuI	CGATCG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	2 cut(s)	89, 776
RsaNI	GTAC	2 cut(s)	88, 775
SacI	GAGCTC	2 cut(s)	332, 795
SapI	GCTCTTC	3 cut(s)	337, 675, 783
SaqAI	TTAA	2 cut(s)	407, 543
SatI	GCNGC	6 cut(s)	118, 121, 603, 630, 752, 979
Sau3AI	GATC	2 cut(s)	32, 374
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	2 cut(s)	965, 975
SduI	GDGCHC	2 cut(s)	332, 795
SfaNI	GCATC	3 cut(s)	253, 684, 807
SmlI	CTYRAG	2 cut(s)	611, 989
SmoI	CTYRAG	2 cut(s)	611, 989
Sse9I	AATT	6 cut(s)	294, 404, 455, 501, 529, 884
SsiI	CCGC	7 cut(s)	74, 121, 508, 562, 772, 850, 978
SspMI	CTAG	3 cut(s)	645, 686, 785
SstI	GAGCTC	2 cut(s)	332, 795
StyD4I	CCNGG	2 cut(s)	963, 973
StyI	CCWWGG	1 cut(s)	239
TaiI	ACGT	3 cut(s)	187, 217, 307
TasI	AATT	6 cut(s)	294, 404, 455, 501, 529, 884
TauI	GCSGC	2 cut(s)	123, 981
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	407, 543
Tru9I	TTAA	2 cut(s)	407, 543
TseI	GCWGC	4 cut(s)	117, 602, 629, 751
TspDTI	ATGAA	4 cut(s)	324, 462, 609, 878
XapI	RAATTY	1 cut(s)	529
XmnI	GAANNNNTTC	2 cut(s)	501, 933
XspI	CTAG	3 cut(s)	645, 686, 785
ZraI	GACGTC	2 cut(s)	185, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.