Rroxscaffold_1G00032290

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007060
Physical Location & Seq
Forward (+)
46150803 .. 46153256
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032290.1

Sequence Viewer

Length: 570 bp
ATGGGTGTAGTGGTGGCTAGGAAGGCTTTTCTGAAGGATGATACTGCTATAGTTCAGCTTGTTATATTTGATGATCAAAATGGGCGACAACATGAAGCAGAATTGAAGCTCATAGAAGAAGAGACCTCAAAAAGAGTGGAAGAAGCAATTCAGCGGAAAGTTAAGGAGAGCTTGAATTCTGAGGAGATTAAAGTAGAAATACAGACGCGGATGGAGGAGGGACGAAAGAAGCTTCTAAATGAAGTTGCAGCTCAACTTGAGAAGGAAAAGGAAGCAGCTATTATGGAGGCTAGACAGAAGGAGGAACAAGCCCAGAAAGAGAAAGAAGAGCTAGAAGGGATGCTTGAAGAGACTCGGAGAAGGGTAGAAGAAGCTCAAAGAAGGGAAGCTTTGGAGCAGCAGAGGAGGGAGGAGGAGCGGTATAGAGAGCTAGAAGAGCTCCAGAGACAAAAGGAAGAGGCGATGCGAAGGAAGAAACAAGAGGAGGAGGAACAACGGTCTAACCAAATGAAGCTGTTGGGTAAGAACAAATCCCGGCCAAAATTGTCATTTGCACTTGGATCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

189

Amino Acids

22.51

Weight (kDa)

5.69

Isoelectric Point (pI)

69.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 31 - 186 2e-43 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 418
AccII CGCG 1 cut(s) 208
AciI CCGC 3 cut(s) 154, 208, 418
AclWI GGATC 2 cut(s) 555, 568
AcoI YGGCCR 1 cut(s) 536
AcsI RAATTY 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 53
AgsI TTSAA 3 cut(s) 106, 175, 347
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 3 cut(s) 116, 344, 439
AlwI GGATC 2 cut(s) 555, 568
AoxI GGCC 1 cut(s) 536
ApeKI GCWGC 3 cut(s) 248, 275, 397
ApoI RAATTY 1 cut(s) 175
Asp700I GAANNNNTTC 1 cut(s) 147
AsuC2I CCSGG 1 cut(s) 535
BamHI GGATCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 260, 287, 409
BccI CCATC 1 cut(s) 205
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 535
BcoDI GTCTC 3 cut(s) 116, 344, 439
BfaI CTAG 4 cut(s) 18, 291, 332, 431
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 3 cut(s) 249, 276, 398
BlsI GCNGC 3 cut(s) 250, 277, 399
Bme1390I CCNGG 1 cut(s) 535
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 330, 453
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
BseGI GGATG 3 cut(s) 43, 216, 345
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 7 cut(s) 197, 230, 418, 425, 428, 497, 500
BseXI GCAGC 3 cut(s) 260, 287, 409
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 1 cut(s) 535
BslFI GGGAC 1 cut(s) 234
BsmAI GTCTC 3 cut(s) 116, 344, 439
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 1 cut(s) 538
Bso31I GGTCTC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 73, 560
BspACI CCGC 3 cut(s) 154, 208, 418
BspANI GGCC 1 cut(s) 538
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 562
BspPI GGATC 2 cut(s) 555, 568
BspQI GCTCTTC 2 cut(s) 321, 429
BspTNI GGTCTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 418
BssMI GATC 2 cut(s) 73, 560
Bst4CI ACNGT 1 cut(s) 498
Bst6I CTCTTC 5 cut(s) 114, 321, 342, 429, 450
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 3 cut(s) 43, 216, 345
BstFNI CGCG 1 cut(s) 208
BstKTI GATC 2 cut(s) 76, 563
BstMAI GTCTC 3 cut(s) 116, 344, 439
BstMBI GATC 2 cut(s) 73, 560
BstMWI GCNNNNNNNGC 2 cut(s) 23, 436
BstSCI CCNGG 1 cut(s) 533
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 3 cut(s) 260, 287, 409
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 1 cut(s) 538
BtgZI GCGATG 1 cut(s) 476
BtsCI GGATG 3 cut(s) 43, 216, 345
CseI GACGC 1 cut(s) 214
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 1 cut(s) 92
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 75, 562
DpnII GATC 2 cut(s) 73, 560
EaeI YGGCCR 1 cut(s) 536
Eam1104I CTCTTC 5 cut(s) 114, 321, 342, 429, 450
EarI CTCTTC 5 cut(s) 114, 321, 342, 429, 450
Ecl136II GAGCTC 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 439
EcoRI GAATTC 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 441
FaeI CATG 1 cut(s) 95
FaiI YATR 6 cut(s) 50, 65, 93, 113, 284, 423
FalI AAGNNNNNCTT 6 cut(s) 155, 187, 327, 359, 373, 405
FaqI GGGAC 1 cut(s) 234
FatI CATG 1 cut(s) 91
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 249, 276, 398
FokI GGATG 3 cut(s) 50, 223, 352
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 3 cut(s) 249, 276, 398
FspBI CTAG 4 cut(s) 18, 291, 332, 431
GluI GCNGC 3 cut(s) 249, 276, 398
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 1 cut(s) 538
HapII CCGG 1 cut(s) 535
HgaI GACGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 95
HindIII AAGCTT 2 cut(s) 230, 387
HinfI GANTC 1 cut(s) 352
HpaII CCGG 1 cut(s) 535
Hpy188I TCNGA 3 cut(s) 33, 181, 357
Hpy188III TCNNGA 1 cut(s) 442
HpyAV CCTTC 8 cut(s) 16, 28, 256, 292, 329, 354, 375, 462
HpyCH4III ACNGT 1 cut(s) 498
HpyCH4V TGCA 2 cut(s) 248, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 436
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 73, 560
LguI GCTCTTC 2 cut(s) 321, 429
LmnI GCTCC 3 cut(s) 394, 415, 444
LpnPI CCDG 3 cut(s) 326, 455, 548
Lsp1109I GCAGC 3 cut(s) 260, 287, 409
LweI GCATC 2 cut(s) 330, 453
MaeI CTAG 4 cut(s) 18, 291, 332, 431
MalI GATC 2 cut(s) 75, 562
MbiI CCGCTC 1 cut(s) 418
MboI GATC 2 cut(s) 73, 560
MboII GAAGA 9 cut(s) 128, 131, 152, 338, 359, 380, 446, 467, 484
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 4 cut(s) 101, 147, 175, 542
MlyI GAGTC 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 2 cut(s) 162, 189
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 535
MspR9I CCNGG 1 cut(s) 535
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 23, 436
NciI CCSGG 1 cut(s) 535
NdeII GATC 2 cut(s) 73, 560
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 562
PciSI GCTCTTC 2 cut(s) 321, 429
PdmI GAANNNNTTC 1 cut(s) 147
PkrI GCNGC 3 cut(s) 250, 277, 399
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 562
PsuI RGATCY 1 cut(s) 560
SacI GAGCTC 1 cut(s) 441
SapI GCTCTTC 2 cut(s) 321, 429
SaqAI TTAA 2 cut(s) 162, 189
SatI GCNGC 3 cut(s) 249, 276, 398
Sau3AI GATC 2 cut(s) 73, 560
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 535
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 2 cut(s) 330, 453
SfcI CTRYAG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 4 cut(s) 101, 147, 175, 542
SsiI CCGC 3 cut(s) 154, 208, 418
SspMI CTAG 4 cut(s) 18, 291, 332, 431
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 533
TaaI ACNGT 1 cut(s) 498
TasI AATT 4 cut(s) 101, 147, 175, 542
Tru1I TTAA 2 cut(s) 162, 189
Tru9I TTAA 2 cut(s) 162, 189
TseI GCWGC 3 cut(s) 248, 275, 397
TspDTI ATGAA 3 cut(s) 108, 255, 524
XapI RAATTY 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 4 cut(s) 18, 291, 332, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.