RchiOBHm_Chr5g0049401

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007060
Physical Location & Seq
Reverse (-)
46955389 .. 46960647
5259 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32707

Sequence Viewer

Length: 804 bp
ATGAGACGCAAAAGTCGCTCTCCAACTCCGAGACGTCGTAAAAGTCGCTCTCCAACTCCCAGACGTCGTAAAAGTCGCTCTCCAACTCCCAGACGTCGTAAAAGTCGTTCTCCAACTCCAAGGCGTCGTAAAAGTCTCTCTCCAACTCCAAAACGTCGGAAAAGTCGCTCTCCAATTTTGAAACGTTATAGGAGGCAGAGAAGTAGGAGCTCTTCATTGTCTCCTGTTCACAAATCTCCTACTTCTAGCCTCGGATCATTGGAGAAGAAAAATGCAAGTGAAAAATTAAGAAAGGAAGAGGAAGAACAGAAGAAAAGGCGACAACATGAAGCAGAATTGAAGCTCATAGAAGAAGAGACCTCAAAAAGAGTGGAAGAAGCAATTCAGCGGAAAGTTGAGGAGAGCTTGAATTCTGAGGAGATTAAAGTAGAAATACAGACGCGGATGGAGGAGGGACGAAAGAAGCTACTAAATGAAGTTGCAGCTCAACTTGAGAAGGAAAAGGAAGCAGCTATTATTGAGGCTAGACAGAAGGAGGAACAAGCCCAGAAAGAGAAAGAAGAGCTAGAAGGGATGCTTGAAGAGACTCAGAGAAGGGTAGAAGAAGCTCAAAGAAGGGAAGCTTTGGAGCAGCAGAGGAGGGAGGAGGAGCGGTACAGAGAGCTAGAAGAGCTCCAGAGACAAAAGGAAGAGGCAATGCGAAGGAAGAAACAAGAGGAGGAGGAACAGCGGTCTAACCAAATGAAGCTGTTGGGTAAGAACAAATCCCGGCCAAAATTGTCATTTGCACTTGGATCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

267

Amino Acids

32.09

Weight (kDa)

10.62

Isoelectric Point (pI)

120.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 109 - 264 3.4e-43 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
AatII GACGTC 3 cut(s) 37, 67, 97
AccBSI CCGCTC 1 cut(s) 652
AccII CGCG 1 cut(s) 442
AciI CCGC 4 cut(s) 388, 442, 652, 730
AclI AACGTT 1 cut(s) 184
AclWI GGATC 3 cut(s) 262, 789, 802
AcoI YGGCCR 1 cut(s) 770
AcsI RAATTY 1 cut(s) 409
AcyI GRCGYC 4 cut(s) 34, 64, 94, 124
AfaI GTAC 1 cut(s) 656
AgsI TTSAA 4 cut(s) 181, 340, 409, 581
Alw21I GWGCWC 2 cut(s) 212, 675
Alw26I GTCTC 6 cut(s) 25, 140, 225, 350, 578, 673
AlwI GGATC 3 cut(s) 262, 789, 802
AoxI GGCC 1 cut(s) 770
ApeKI GCWGC 3 cut(s) 482, 509, 631
ApoI RAATTY 1 cut(s) 409
Asp700I GAANNNNTTC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 769
BamHI GGATCC 1 cut(s) 794
BanII GRGCYC 2 cut(s) 212, 675
BarI GAAGNNNNNNTAC 2 cut(s) 196, 228
Bbv12I GWGCWC 2 cut(s) 212, 675
BbvI GCAGC 3 cut(s) 494, 521, 643
BccI CCATC 1 cut(s) 439
BcnI CCSGG 1 cut(s) 769
BcoDI GTCTC 6 cut(s) 25, 140, 225, 350, 578, 673
BfaI CTAG 4 cut(s) 246, 525, 566, 665
BisI GCNGC 3 cut(s) 483, 510, 632
BlsI GCNGC 3 cut(s) 484, 511, 633
Bme1390I CCNGG 1 cut(s) 769
BmiI GGNNCC 1 cut(s) 796
BmrFI CCNGG 1 cut(s) 769
BmsI GCATC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 769
BsaHI GRCGYC 4 cut(s) 34, 64, 94, 124
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 119, 250
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bse3DI GCAATG 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 119, 250
BseGI GGATG 2 cut(s) 450, 579
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 2 cut(s) 405, 602
BseRI GAGGAG 8 cut(s) 413, 431, 464, 652, 659, 662, 731, 734
BseXI GCAGC 3 cut(s) 494, 521, 643
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 1 cut(s) 772
BsiHKAI GWGCWC 2 cut(s) 212, 675
BsiSI CCGG 1 cut(s) 769
BslFI GGGAC 1 cut(s) 468
BsmAI GTCTC 6 cut(s) 25, 140, 225, 350, 578, 673
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 1 cut(s) 772
Bso31I GGTCTC 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 212, 675
Bsp143I GATC 2 cut(s) 254, 794
BspACI CCGC 4 cut(s) 388, 442, 652, 730
BspANI GGCC 1 cut(s) 772
BspCNI CTCAG 2 cut(s) 406, 601
BspFNI CGCG 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 796
BspPI GGATC 3 cut(s) 262, 789, 802
BspQI GCTCTTC 3 cut(s) 217, 555, 663
BspTNI GGTCTC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 702
BssECI CCNNGG 2 cut(s) 119, 250
BssMI GATC 2 cut(s) 254, 794
BssNI GRCGYC 4 cut(s) 34, 64, 94, 124
BssT1I CCWWGG 1 cut(s) 119
Bst6I CTCTTC 7 cut(s) 217, 291, 348, 555, 576, 663, 684
BstACI GRCGYC 4 cut(s) 34, 64, 94, 124
BstDEI CTNAG 2 cut(s) 414, 588
BstF5I GGATG 2 cut(s) 450, 579
BstFNI CGCG 1 cut(s) 442
BstKTI GATC 2 cut(s) 257, 797
BstMAI GTCTC 6 cut(s) 25, 140, 225, 350, 578, 673
BstMBI GATC 2 cut(s) 254, 794
BstMWI GCNNNNNNNGC 2 cut(s) 15, 670
BstSCI CCNGG 1 cut(s) 767
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 3 cut(s) 494, 521, 643
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
BsuRI GGCC 1 cut(s) 772
BtsCI GGATG 2 cut(s) 450, 579
CseI GACGC 3 cut(s) 15, 113, 448
Csp6I GTAC 1 cut(s) 655
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 1 cut(s) 326
CviQI GTAC 1 cut(s) 655
DdeI CTNAG 2 cut(s) 414, 588
DpnI GATC 2 cut(s) 256, 796
DpnII GATC 2 cut(s) 254, 794
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 770
Eam1104I CTCTTC 7 cut(s) 217, 291, 348, 555, 576, 663, 684
EarI CTCTTC 7 cut(s) 217, 291, 348, 555, 576, 663, 684
Ecl136II GAGCTC 2 cut(s) 210, 673
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 2 cut(s) 212, 675
Eco31I GGTCTC 1 cut(s) 350
Eco53kI GAGCTC 2 cut(s) 210, 673
EcoICRI GAGCTC 2 cut(s) 210, 673
EcoRI GAATTC 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 2 cut(s) 212, 675
ErhI CCWWGG 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 1 cut(s) 329
FaiI YATR 3 cut(s) 189, 327, 347
FalI AAGNNNNNCTT 4 cut(s) 561, 593, 607, 639
FaqI GGGAC 1 cut(s) 468
FatI CATG 1 cut(s) 325
Fnu4HI GCNGC 3 cut(s) 483, 510, 632
FokI GGATG 2 cut(s) 457, 586
FriOI GRGCYC 2 cut(s) 212, 675
Fsp4HI GCNGC 3 cut(s) 483, 510, 632
FspBI CTAG 4 cut(s) 246, 525, 566, 665
GluI GCNGC 3 cut(s) 483, 510, 632
GsuI CTGGAG 1 cut(s) 659
HaeIII GGCC 1 cut(s) 772
HapII CCGG 1 cut(s) 769
HgaI GACGC 3 cut(s) 15, 113, 448
Hin1I GRCGYC 4 cut(s) 34, 64, 94, 124
Hin1II CATG 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 621
HinfI GANTC 1 cut(s) 586
HpaII CCGG 1 cut(s) 769
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 5 cut(s) 30, 159, 254, 415, 591
Hpy188III TCNNGA 1 cut(s) 676
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 5 cut(s) 39, 69, 99, 129, 159
HpyAV CCTTC 6 cut(s) 490, 526, 563, 588, 609, 696
HpyCH4IV ACGT 5 cut(s) 34, 64, 94, 154, 184
HpyCH4V TGCA 3 cut(s) 275, 482, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 670
HpyF3I CTNAG 2 cut(s) 414, 588
HpySE526I ACGT 5 cut(s) 34, 64, 94, 154, 184
Hsp92I GRCGYC 4 cut(s) 34, 64, 94, 124
Hsp92II CATG 1 cut(s) 329
Kzo9I GATC 2 cut(s) 254, 794
LguI GCTCTTC 3 cut(s) 217, 555, 663
LmnI GCTCC 4 cut(s) 207, 628, 649, 678
LpnPI CCDG 6 cut(s) 73, 103, 237, 560, 689, 782
Lsp1109I GCAGC 3 cut(s) 494, 521, 643
LweI GCATC 1 cut(s) 564
MaeI CTAG 4 cut(s) 246, 525, 566, 665
MaeII ACGT 5 cut(s) 34, 64, 94, 154, 184
MalI GATC 2 cut(s) 256, 796
MbiI CCGCTC 1 cut(s) 652
MboI GATC 2 cut(s) 254, 794
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 2 cut(s) 212, 675
MluCI AATT 6 cut(s) 174, 284, 335, 381, 409, 776
MlyI GAGTC 1 cut(s) 580
MmeI TCCRAC 6 cut(s) 47, 77, 107, 137, 137, 167
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 2 cut(s) 287, 423
MspA1I CMGCKG 2 cut(s) 388, 730
MspI CCGG 1 cut(s) 769
MspR9I CCNGG 1 cut(s) 769
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 2 cut(s) 15, 670
NciI CCSGG 1 cut(s) 769
NdeII GATC 2 cut(s) 254, 794
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 1 cut(s) 796
PciSI GCTCTTC 3 cut(s) 217, 555, 663
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 381
PkrI GCNGC 3 cut(s) 484, 511, 633
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
Psp124BI GAGCTC 2 cut(s) 212, 675
Psp1406I AACGTT 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 796
PsrI GAACNNNNNNTAC 2 cut(s) 91, 123
PsuI RGATCY 1 cut(s) 794
RsaI GTAC 1 cut(s) 656
RsaNI GTAC 1 cut(s) 655
SacI GAGCTC 2 cut(s) 212, 675
SapI GCTCTTC 3 cut(s) 217, 555, 663
SaqAI TTAA 2 cut(s) 287, 423
SatI GCNGC 3 cut(s) 483, 510, 632
Sau3AI GATC 2 cut(s) 254, 794
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 1 cut(s) 769
SduI GDGCHC 2 cut(s) 212, 675
SfaNI GCATC 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 6 cut(s) 174, 284, 335, 381, 409, 776
SsiI CCGC 4 cut(s) 388, 442, 652, 730
SspMI CTAG 4 cut(s) 246, 525, 566, 665
SstI GAGCTC 2 cut(s) 212, 675
StyD4I CCNGG 1 cut(s) 767
StyI CCWWGG 1 cut(s) 119
TaiI ACGT 5 cut(s) 37, 67, 97, 157, 187
TasI AATT 6 cut(s) 174, 284, 335, 381, 409, 776
Tru1I TTAA 2 cut(s) 287, 423
Tru9I TTAA 2 cut(s) 287, 423
TseI GCWGC 3 cut(s) 482, 509, 631
TspDTI ATGAA 4 cut(s) 204, 342, 489, 758
XapI RAATTY 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 4 cut(s) 246, 525, 566, 665
ZraI GACGTC 3 cut(s) 35, 65, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.