MD08G1229400.v1.1

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0007060
Physical Location & Seq
Forward (+)
29535721 .. 29544267
8547 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1229400.v1.1.491

Sequence Viewer

Length: 546 bp
ATGGGTGCATCGTTTATCTACTGTTCACCAGTTGTGAAACTCATATGTTTGGATCAGAATACATTAGAGGAAGCAGAATTGAAACTGCTTGAAGAAGAGACTTCAAGAAGAGTGGAAGAAGCAATTCGTAGGAAGGTTGAGGAGAGCTTAAACTCTGATGAGATTAAAGTGGAAATACAGAGGCAGTTGGAGGAAGGACAGAAGAAGCTCCTTACTGAAGTGGCAGCGCAACTTGAGAAAGAAAAGGAAGCAGCTCTGATTGAGGCTAGGCGTAAGGAGGAACAAGCTCGAAGAGAAAAAGAAGAGCTGGAAGGGATGCTTGAAGAGAACCGGAGGAGAGTGGAAGAAGCTCAAAGAAGGGAGGCTTTGGAGCAGCAGCGGAGGGAGGAGGAGAGATACAAGGAGCTGGAAGAACTCCAGAGACAAAAAGAAGAGGCAGTGCGAAGGAAGAAACAAGAGGAGGAGGAAGCCCGGTTGAACCAAACGAAATTGTTGGGTAAGAACAAAGCCCGGCCAAAATTGTCATTTGCACTCGGATCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

182

Amino Acids

21.52

Weight (kDa)

5.45

Isoelectric Point (pI)

86.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 24 - 178 5.7e-43 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 379
AclWI GGATC 3 cut(s) 60, 531, 544
AcoI YGGCCR 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 237
AgsI TTSAA 5 cut(s) 82, 92, 105, 323, 478
AluBI AGCT 7 cut(s) 147, 208, 254, 287, 307, 350, 406
AluI AGCT 7 cut(s) 147, 208, 254, 287, 307, 350, 406
Alw26I GTCTC 2 cut(s) 92, 415
AlwI GGATC 3 cut(s) 60, 531, 544
AoxI GGCC 1 cut(s) 512
ApeKI GCWGC 4 cut(s) 224, 251, 373, 376
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 1 cut(s) 229
AsuC2I CCSGG 2 cut(s) 472, 511
AsuHPI GGTGA 1 cut(s) 18
BamHI GGATCC 1 cut(s) 536
BbvI GCAGC 4 cut(s) 236, 263, 385, 388
BcnI CCSGG 2 cut(s) 472, 511
BcoDI GTCTC 2 cut(s) 92, 415
BfaI CTAG 1 cut(s) 267
BisI GCNGC 4 cut(s) 225, 252, 374, 377
BlsI GCNGC 4 cut(s) 226, 253, 375, 378
Bme1390I CCNGG 2 cut(s) 472, 511
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 2 cut(s) 472, 511
BmsI GCATC 2 cut(s) 17, 306
BpmI CTGGAG 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 254
BpuMI CCSGG 2 cut(s) 472, 511
BsaWI WCCGGW 1 cut(s) 330
Bse1I ACTGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 6 cut(s) 155, 349, 401, 404, 473, 476
BseXI GCAGC 4 cut(s) 236, 263, 385, 388
BshFI GGCC 1 cut(s) 514
BsiSI CCGG 3 cut(s) 331, 472, 511
BsmAI GTCTC 2 cut(s) 92, 415
BsnI GGCC 1 cut(s) 514
Bsp143I GATC 2 cut(s) 52, 536
BspACI CCGC 1 cut(s) 379
BspANI GGCC 1 cut(s) 514
BspLI GGNNCC 1 cut(s) 538
BspPI GGATC 3 cut(s) 60, 531, 544
BspQI GCTCTTC 1 cut(s) 297
BsrI ACTGG 1 cut(s) 29
BssMI GATC 2 cut(s) 52, 536
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 6 cut(s) 90, 103, 286, 297, 318, 426
BstF5I GGATG 1 cut(s) 321
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 2 cut(s) 55, 539
BstMAI GTCTC 2 cut(s) 92, 415
BstMBI GATC 2 cut(s) 52, 536
BstSCI CCNGG 2 cut(s) 470, 509
BstV1I GCAGC 4 cut(s) 236, 263, 385, 388
BstX2I RGATCY 1 cut(s) 536
BstYI RGATCY 1 cut(s) 536
BsuRI GGCC 1 cut(s) 514
BtsCI GGATG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
CfoI GCGC 1 cut(s) 229
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
DpnI GATC 2 cut(s) 54, 538
DpnII GATC 2 cut(s) 52, 536
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 6 cut(s) 90, 103, 286, 297, 318, 426
EarI CTCTTC 6 cut(s) 90, 103, 286, 297, 318, 426
Eco57I CTGAAG 1 cut(s) 237
FaiI YATR 2 cut(s) 44, 46
FalI AAGNNNNNCTT 4 cut(s) 303, 335, 349, 381
FauNDI CATATG 1 cut(s) 44
Fnu4HI GCNGC 4 cut(s) 225, 252, 374, 377
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 4 cut(s) 225, 252, 374, 377
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 228
GluI GCNGC 4 cut(s) 225, 252, 374, 377
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 1 cut(s) 514
HapII CCGG 3 cut(s) 331, 472, 511
HhaI GCGC 1 cut(s) 229
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HpaII CCGG 3 cut(s) 331, 472, 511
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 4 cut(s) 57, 157, 258, 536
Hpy188III TCNNGA 2 cut(s) 105, 418
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 5 cut(s) 127, 188, 305, 351, 438
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 8, 530
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 2 cut(s) 52, 536
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 3 cut(s) 213, 370, 403
LpnPI CCDG 7 cut(s) 42, 293, 344, 392, 431, 485, 524
Lsp1109I GCAGC 4 cut(s) 236, 263, 385, 388
LweI GCATC 2 cut(s) 17, 306
MaeI CTAG 1 cut(s) 267
MalI GATC 2 cut(s) 54, 538
MboI GATC 2 cut(s) 52, 536
MflI RGATCY 1 cut(s) 536
MluCI AATT 4 cut(s) 77, 123, 488, 518
MmeI TCCRAC 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 2 cut(s) 149, 165
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 3 cut(s) 331, 472, 511
MspR9I CCNGG 2 cut(s) 472, 511
NciI CCSGG 2 cut(s) 472, 511
NdeI CATATG 1 cut(s) 44
NdeII GATC 2 cut(s) 52, 536
NlaIV GGNNCC 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 123
PkrI GCNGC 4 cut(s) 226, 253, 375, 378
PspN4I GGNNCC 1 cut(s) 538
PsuI RGATCY 1 cut(s) 536
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 149, 165
SatI GCNGC 4 cut(s) 225, 252, 374, 377
Sau3AI GATC 2 cut(s) 52, 536
ScrFI CCNGG 2 cut(s) 472, 511
SetI ASST 8 cut(s) 138, 149, 210, 256, 289, 309, 352, 408
SfaNI GCATC 2 cut(s) 17, 306
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 4 cut(s) 77, 123, 488, 518
SsiI CCGC 1 cut(s) 379
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 470, 509
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 289
TasI AATT 4 cut(s) 77, 123, 488, 518
Tru1I TTAA 2 cut(s) 149, 165
Tru9I TTAA 2 cut(s) 149, 165
TscAI CASTG 1 cut(s) 444
TseI GCWGC 4 cut(s) 224, 251, 373, 376
TspRI CASTG 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.