Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014052.1

Orthogroup ID

OG0007060

Physical Location & Seq

Genomic Coordinates Forward (+)

40500 .. 41563

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014052.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgaagattagtttggcatatattgtactcggaaaatcacgagagggggggaggaaaaaaagtagtgtgtatggtgattggtgttcaatttccatcgcagtctggattcaaaacattcggaaaaaagaaagcagcagttcccttcttgataggccactttattgcttaacatattttcctctacacaggcgacaacatgaagcagaattgaagctcatagaagaagagacctcaaaaagagtggaagaagcaattcagcggaaagttgaggagagcttgaattctgaggagattaaagtagaaatacagacgcggatggaggagggacgaaagaagctactaaatgaagttgcagctcaacttgagaaggaaaaggaagcagctgttattgaggctagacagaaggaggaacaagcccagaaagagaaagaagagctagaagggatgcttgaagagactcagagaagggtagaagaagctcaaagaagggaagctttggagcagcagaggagggaggaggagcggtacagagagctagaagagctccagagacaaaaggaagaggcgatgcgaaggaagaaacaagaggaggaggaacagcggtctaaccaaatgaagctgttgggtaagaacaaatcccggccaaaattgtcatttgcacttggatccaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARGLU

Protein Analysis

224

Amino Acids

26.63

Weight (kDa)

8.36

Isoelectric Point (pI)

72.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10890 AT1G10890 AT1G10890 AT1G10890
fragaria_vesca	FvH4_3g26951
malus_domestica	MD08G1229300.v1.1 MD08G1229400.v1.1 MD15G1423300.v1.1
prunus_persica	Prupe.1G568600_v2.0.a1 Prupe.1G568600_v2.0.a1 Prupe.1G568600_v2.0.a1 Prupe.1G568600_v2.0.a1
pyrus_communis	pycom08g19970
rosa_chinensis	RchiOBHm_Chr5g0049401
rosa_laevigata	RLG00000034617
rosa_multiflora	Rmu_sc0001307.1_g000007 Rmu_sc0014052.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032290
rosa_rugosa	Rorug05G0248300 Rorug05G0248400
rosa_samantha	Rh5AG324700 Rh5BG335700 Rh5CG360500 Rh5DG348100
rosa_wichuraiana	Rw5G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	523
AccII	CGCG	1 cut(s)	313
AciI	CCGC	4 cut(s)	259, 313, 523, 601
AclWI	GGATC	2 cut(s)	660, 673
AcoI	YGGCCR	1 cut(s)	641
AcsI	RAATTY	1 cut(s)	280
AfaI	GTAC	2 cut(s)	27, 527
AgsI	TTSAA	5 cut(s)	87, 110, 211, 280, 452
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	3 cut(s)	221, 449, 544
AlwI	GGATC	2 cut(s)	660, 673
AoxI	GGCC	2 cut(s)	152, 641
ApeKI	GCWGC	4 cut(s)	132, 353, 380, 502
ApoI	RAATTY	1 cut(s)	280
Asp700I	GAANNNNTTC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	640
AsuHPI	GGTGA	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	546
BauI	CACGAG	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	4 cut(s)	144, 365, 392, 514
BccI	CCATC	2 cut(s)	101, 310
BcnI	CCSGG	1 cut(s)	640
BcoDI	GTCTC	3 cut(s)	221, 449, 544
BfaI	CTAG	3 cut(s)	396, 437, 536
BisI	GCNGC	4 cut(s)	133, 354, 381, 503
BlsI	GCNGC	4 cut(s)	134, 355, 382, 504
Bme1390I	CCNGG	1 cut(s)	640
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	435, 558
BpmI	CTGGAG	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	640
BsaI	GGTCTC	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
BseGI	GGATG	2 cut(s)	321, 450
BseMII	CTCAG	2 cut(s)	276, 473
BseRI	GAGGAG	8 cut(s)	284, 302, 335, 523, 530, 533, 602, 605
BseXI	GCAGC	4 cut(s)	144, 365, 392, 514
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	2 cut(s)	154, 643
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	339
BsmAI	GTCTC	3 cut(s)	221, 449, 544
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	154, 643
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	1 cut(s)	665
BspACI	CCGC	4 cut(s)	259, 313, 523, 601
BspANI	GGCC	2 cut(s)	154, 643
BspCNI	CTCAG	2 cut(s)	277, 472
BspFNI	CGCG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	667
BspPI	GGATC	2 cut(s)	660, 673
BspQI	GCTCTTC	2 cut(s)	426, 534
BspTNI	GGTCTC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	523
BssMI	GATC	1 cut(s)	665
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst6I	CTCTTC	5 cut(s)	219, 426, 447, 534, 555
BstDEI	CTNAG	2 cut(s)	285, 459
BstF5I	GGATG	2 cut(s)	321, 450
BstFNI	CGCG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	668
BstMAI	GTCTC	3 cut(s)	221, 449, 544
BstMBI	GATC	1 cut(s)	665
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	638
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	4 cut(s)	144, 365, 392, 514
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	154, 643
BtgZI	GCGATG	2 cut(s)	79, 581
BtsCI	GGATG	2 cut(s)	321, 450
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	26, 526
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	1 cut(s)	197
CviQI	GTAC	2 cut(s)	26, 526
DdeI	CTNAG	2 cut(s)	285, 459
DpnI	GATC	1 cut(s)	667
DpnII	GATC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	641
Eam1104I	CTCTTC	5 cut(s)	219, 426, 447, 534, 555
EarI	CTCTTC	5 cut(s)	219, 426, 447, 534, 555
Ecl136II	GAGCTC	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	546
FaeI	CATG	1 cut(s)	200
FaiI	YATR	6 cut(s)	19, 21, 72, 172, 198, 218
FalI	AAGNNNNNCTT	4 cut(s)	432, 464, 478, 510
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	133, 354, 381, 503
FokI	GGATG	2 cut(s)	328, 457
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	4 cut(s)	133, 354, 381, 503
FspBI	CTAG	3 cut(s)	396, 437, 536
GluI	GCNGC	4 cut(s)	133, 354, 381, 503
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	2 cut(s)	154, 643
HapII	CCGG	1 cut(s)	640
HgaI	GACGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	2 cut(s)	106, 457
HpaII	CCGG	1 cut(s)	640
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	4 cut(s)	32, 120, 286, 462
Hpy188III	TCNNGA	4 cut(s)	39, 103, 146, 547
HpyAV	CCTTC	7 cut(s)	152, 361, 397, 434, 459, 480, 567
HpyCH4V	TGCA	2 cut(s)	353, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpyF3I	CTNAG	2 cut(s)	285, 459
Hsp92II	CATG	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	665
LguI	GCTCTTC	2 cut(s)	426, 534
LmnI	GCTCC	3 cut(s)	499, 520, 549
LpnPI	CCDG	5 cut(s)	88, 172, 431, 560, 653
Lsp1109I	GCAGC	4 cut(s)	144, 365, 392, 514
LweI	GCATC	2 cut(s)	435, 558
MaeI	CTAG	3 cut(s)	396, 437, 536
MalI	GATC	1 cut(s)	667
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	1 cut(s)	665
MflI	RGATCY	1 cut(s)	665
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	5 cut(s)	87, 206, 252, 280, 647
MlyI	GAGTC	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	167, 294
MspA1I	CMGCKG	3 cut(s)	259, 383, 601
MspI	CCGG	1 cut(s)	640
MspR9I	CCNGG	1 cut(s)	640
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	541
NciI	CCSGG	1 cut(s)	640
NdeII	GATC	1 cut(s)	665
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	667
PciSI	GCTCTTC	2 cut(s)	426, 534
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	134, 355, 382, 504
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	665
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	27, 527
RsaNI	GTAC	2 cut(s)	26, 526
SacI	GAGCTC	1 cut(s)	546
SapI	GCTCTTC	2 cut(s)	426, 534
SaqAI	TTAA	2 cut(s)	167, 294
SatI	GCNGC	4 cut(s)	133, 354, 381, 503
Sau3AI	GATC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	640
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	2 cut(s)	435, 558
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	5 cut(s)	87, 206, 252, 280, 647
SsiI	CCGC	4 cut(s)	259, 313, 523, 601
SspMI	CTAG	3 cut(s)	396, 437, 536
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	638
TasI	AATT	5 cut(s)	87, 206, 252, 280, 647
TatI	WGTACW	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	167, 294
Tru9I	TTAA	2 cut(s)	167, 294
TseI	GCWGC	4 cut(s)	132, 353, 380, 502
TspDTI	ATGAA	4 cut(s)	17, 213, 360, 629
XapI	RAATTY	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	3 cut(s)	396, 437, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.