FvH4_3g26951

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007060
Physical Location & Seq
Reverse (-)
20061342 .. 20067813
6472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26951.t1

Sequence Viewer

Length: 912 bp
ATGCCTCGTGATTTGGCACGGTCACGATCACGATCGCCGTCTCGTCGGAGATCATCTCCGGTGGGGCATCGGTATAGCAAGAGAAGCCGAAGGGACCGAAGCCGAAGCCGCTCTCTCTATTCCTCCTCATATTCTTATAGCAGACGTAAAAGTCGTTCCCCAACTCCAAGGCGTCGTAAAAGTCGCTCCCCAACTCCAAGACGTCGTAAAAGTCGCTCTCCAACTCTGAGACGTCGTAAAAGTCGCTCTCCAACTCCAAAACGTCATAGAAGTCGATCTCCGATTTCAAAACGTTATAAGAGGCAAAGAAGTAGAAGCTCTTCAGTGTCTCCTATTCCCAAATCTCCTACTTCAAGTCTTGGATTATTGGAGCAGAAAAATGCAAGTGAAAAATTAAGACAGGAAGAGGAAGAAGAGAAAAAAAGGCGGCAACATGAAGCAGAATTGAAGCTCATAGAAGAAGAGACATCAAAAAGAGTGGAAGAAGCAATTCAGCAGAAAGTTGAGGAGAGCTTGAATTCTGAGGAGATTAAAGTAGAAATACAGACCCGGATGGAGGAAGGACGAAAGAAGCTTCTAAATGAAGTTGCAGCTCAACTTGAGAAGGAAAAGGAAGCAGCTATTATTGAGGCTAGACAGAAGGAGGAACAAGCTCAGAAAGAGAAAGAAGAGCTAGAATCGATGCTTGAAGAGAACCGGAGAAGGGTAGAAGAAGCTCAAAGAAAAGAAGCTTTGGAACAGCAGAGGAGGGAGGAAGAGCGGTACAGAGAGCTAGAAGAGCTCCAGAGACAAAAAGAAGAGGCAATGCGAAGGAAGAAACAAGAAGAGGAGGAACAACGGTCTAACCAAATGAAGCTGTTGGGTAAGAACAAATCTCGACCAAAATTGTCATTTGCACTTGGATCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

304

Amino Acids

36.36

Weight (kDa)

10.74

Isoelectric Point (pI)

134.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 145 - 300 6.5e-44 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AasI GACNNNNNNGTC 1 cut(s) 150
AatII GACGTC 2 cut(s) 205, 235
AccBSI CCGCTC 2 cut(s) 111, 760
AciI CCGC 3 cut(s) 109, 427, 760
AclI AACGTT 1 cut(s) 292
AclWI GGATC 2 cut(s) 897, 910
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 3 cut(s) 172, 202, 232
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 2 cut(s) 556, 703
AgsI TTSAA 5 cut(s) 288, 354, 448, 517, 689
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 5 cut(s) 45, 223, 333, 458, 781
AlwI GGATC 2 cut(s) 897, 910
ApeKI GCWGC 2 cut(s) 590, 617
ApoI RAATTY 1 cut(s) 517
Asp700I GAANNNNTTC 2 cut(s) 319, 489
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 550
AvaII GGWCC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 902
BanII GRGCYC 1 cut(s) 783
BarI GAAGNNNNNNTAC 2 cut(s) 304, 336
BauI CACGAG 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 2 cut(s) 602, 629
BccI CCATC 1 cut(s) 547
BceAI ACGGC 1 cut(s) 22
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 5 cut(s) 45, 223, 333, 458, 781
BfaI CTAG 3 cut(s) 633, 674, 773
BisI GCNGC 4 cut(s) 109, 428, 591, 618
BlsI GCNGC 4 cut(s) 110, 429, 592, 619
Bme1390I CCNGG 1 cut(s) 550
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 95, 904
BmrFI CCNGG 1 cut(s) 550
BmsI GCATC 2 cut(s) 76, 672
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpmI CTGGAG 1 cut(s) 767
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 550
Bsa29I ATCGAT 1 cut(s) 680
BsaBI GATNNNNATC 1 cut(s) 31
BsaHI GRCGYC 3 cut(s) 172, 202, 232
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 2 cut(s) 58, 696
Bsc4I CCNNNNNNNGG 2 cut(s) 556, 703
Bse3DI GCAATG 1 cut(s) 810
Bse8I GATNNNNATC 1 cut(s) 31
BseCI ATCGAT 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 558
BseJI GATNNNNATC 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 556, 703
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 3 cut(s) 218, 513, 668
BseRI GAGGAG 5 cut(s) 115, 521, 539, 760, 842
BseXI GCAGC 2 cut(s) 602, 629
Bsh1285I CGRYCG 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 680
BsiEI CGRYCG 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 3 cut(s) 59, 550, 697
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 556, 703
BsmAI GTCTC 5 cut(s) 45, 223, 333, 458, 781
BsmBI CGTCTC 2 cut(s) 45, 223
BsmFI GGGAC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 783
Bsp143I GATC 5 cut(s) 26, 32, 50, 275, 902
BspACI CCGC 3 cut(s) 109, 427, 760
BspCNI CTCAG 3 cut(s) 219, 514, 667
BspDI ATCGAT 1 cut(s) 680
BspLI GGNNCC 2 cut(s) 95, 904
BspPI GGATC 2 cut(s) 897, 910
BspQI GCTCTTC 4 cut(s) 325, 663, 750, 771
BsrBI CCGCTC 2 cut(s) 111, 760
BsrDI GCAATG 1 cut(s) 810
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 5 cut(s) 26, 32, 50, 275, 902
BssNI GRCGYC 3 cut(s) 172, 202, 232
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 21, 840
BstACI GRCGYC 3 cut(s) 172, 202, 232
BstDEI CTNAG 3 cut(s) 227, 522, 654
BstF5I GGATG 1 cut(s) 558
BstKTI GATC 5 cut(s) 29, 35, 53, 278, 905
BstMAI GTCTC 5 cut(s) 45, 223, 333, 458, 781
BstMBI GATC 5 cut(s) 26, 32, 50, 275, 902
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 3 cut(s) 84, 108, 778
BstSCI CCNGG 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 602, 629
BstX2I RGATCY 1 cut(s) 902
BstYI RGATCY 1 cut(s) 902
Bsu15I ATCGAT 1 cut(s) 680
BsuTUI ATCGAT 1 cut(s) 680
BtsCI GGATG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 94
ClaI ATCGAT 1 cut(s) 680
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 763
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 1 cut(s) 434
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 3 cut(s) 227, 522, 654
DpnI GATC 5 cut(s) 28, 34, 52, 277, 904
DpnII GATC 5 cut(s) 26, 32, 50, 275, 902
DrdI GACNNNNNNGTC 1 cut(s) 150
DseDI GACNNNNNNGTC 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 781
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 783
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 781
Eco57I CTGAAG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 781
EcoRI GAATTC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 783
ErhI CCWWGG 1 cut(s) 167
Esp3I CGTCTC 2 cut(s) 45, 223
FaeI CATG 1 cut(s) 437
FaiI YATR 7 cut(s) 75, 130, 138, 267, 297, 435, 455
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 433
Fnu4HI GCNGC 4 cut(s) 109, 428, 591, 618
FokI GGATG 1 cut(s) 565
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 4 cut(s) 109, 428, 591, 618
FspBI CTAG 3 cut(s) 633, 674, 773
GluI GCNGC 4 cut(s) 109, 428, 591, 618
GsuI CTGGAG 1 cut(s) 767
HapII CCGG 3 cut(s) 59, 550, 697
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 3 cut(s) 172, 202, 232
Hin1II CATG 1 cut(s) 437
HindIII AAGCTT 2 cut(s) 572, 729
HinfI GANTC 1 cut(s) 677
HpaII CCGG 3 cut(s) 59, 550, 697
Hpy188I TCNGA 5 cut(s) 48, 228, 282, 523, 657
Hpy188III TCNNGA 5 cut(s) 8, 24, 30, 784, 876
Hpy99I CGWCG 4 cut(s) 48, 177, 207, 237
HpyAV CCTTC 6 cut(s) 84, 554, 598, 634, 696, 804
HpyCH4III ACNGT 2 cut(s) 21, 840
HpyCH4IV ACGT 5 cut(s) 145, 202, 232, 262, 292
HpyCH4V TGCA 3 cut(s) 383, 590, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 108, 778
HpyF3I CTNAG 3 cut(s) 227, 522, 654
HpySE526I ACGT 5 cut(s) 145, 202, 232, 262, 292
Hsp92I GRCGYC 3 cut(s) 172, 202, 232
Hsp92II CATG 1 cut(s) 437
Kzo9I GATC 5 cut(s) 26, 32, 50, 275, 902
LguI GCTCTTC 4 cut(s) 325, 663, 750, 771
LmnI GCTCC 3 cut(s) 191, 370, 786
LpnPI CCDG 5 cut(s) 72, 386, 563, 710, 797
Lsp1109I GCAGC 2 cut(s) 602, 629
LweI GCATC 2 cut(s) 76, 672
MaeI CTAG 3 cut(s) 633, 674, 773
MaeII ACGT 5 cut(s) 145, 202, 232, 262, 292
MaeIII GTNAC 1 cut(s) 21
MalI GATC 5 cut(s) 28, 34, 52, 277, 904
MbiI CCGCTC 2 cut(s) 111, 760
MboI GATC 5 cut(s) 26, 32, 50, 275, 902
MflI RGATCY 1 cut(s) 902
MhlI GDGCHC 1 cut(s) 783
MluCI AATT 5 cut(s) 392, 443, 489, 517, 884
MmeI TCCRAC 3 cut(s) 26, 245, 275
MroXI GAANNNNTTC 2 cut(s) 319, 489
MseI TTAA 2 cut(s) 395, 531
MspI CCGG 3 cut(s) 59, 550, 697
MspR9I CCNGG 1 cut(s) 550
MwoI GCNNNNNNNGC 3 cut(s) 84, 108, 778
NciI CCSGG 1 cut(s) 550
NdeII GATC 5 cut(s) 26, 32, 50, 275, 902
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 2 cut(s) 95, 904
NmuCI GTSAC 1 cut(s) 21
PciSI GCTCTTC 4 cut(s) 325, 663, 750, 771
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 319, 489
PfeI GAWTC 1 cut(s) 677
PkrI GCNGC 4 cut(s) 110, 429, 592, 619
Ple19I CGATCG 1 cut(s) 35
PsiI TTATAA 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 783
Psp1406I AACGTT 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 95, 904
PspPI GGNCC 1 cut(s) 94
PsrI GAACNNNNNNTAC 2 cut(s) 139, 171
PsuI RGATCY 1 cut(s) 902
PvuI CGATCG 1 cut(s) 35
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
SacI GAGCTC 1 cut(s) 783
SapI GCTCTTC 4 cut(s) 325, 663, 750, 771
SaqAI TTAA 2 cut(s) 395, 531
SatI GCNGC 4 cut(s) 109, 428, 591, 618
Sau3AI GATC 5 cut(s) 26, 32, 50, 275, 902
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 550
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 2 cut(s) 76, 672
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 5 cut(s) 392, 443, 489, 517, 884
SsiI CCGC 3 cut(s) 109, 427, 760
SspMI CTAG 3 cut(s) 633, 674, 773
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 1 cut(s) 548
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 21, 840
TaiI ACGT 5 cut(s) 148, 205, 235, 265, 295
TaqI TCGA 3 cut(s) 274, 680, 877
TaqII GACCGA 1 cut(s) 111
TasI AATT 5 cut(s) 392, 443, 489, 517, 884
TauI GCSGC 2 cut(s) 111, 430
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 2 cut(s) 395, 531
Tru9I TTAA 2 cut(s) 395, 531
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 2 cut(s) 590, 617
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 450, 597, 866
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 517
XmnI GAANNNNTTC 2 cut(s) 319, 489
XspI CTAG 3 cut(s) 633, 674, 773
ZraI GACGTC 2 cut(s) 203, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.