RLG00000034617

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007060
Physical Location & Seq
Reverse (-)
46267442 .. 46274341
6900 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034617

Sequence Viewer

Length: 1353 bp
ATGGAGAAAACTTTAGGCTTCGGTCTCTTCGTGCTCGTTTTCGTTGGTTTCGGAGGGGATTTGTTTTTTGAGGGGAGTTTGAGCGCTGCTGTGTTGATGGGCCAACAAATTGTTGGGACGGCATCAGAGGAGGGCAGCGATTGTTGGGAGGAGTGGGATTCGGGTAGAAGCCACGGTGTTGAAGCGGTGGCGACATCTTCTGGGCAAACGAAGCCTCTTCGTGTGGCGGCATGGAGCGTCACCGGCGATTGGGCCGATTGTCGAGATGTTTTGGGTGATAGCAGACAACTTCGTGGGCCTTGGGCTCAAGTTGATTTCTTGGGTTTGAGCCTAAGTTCGAGTGGGTGGACAATTGCTAGCCTGGGGTTCCGTTTCCATGGGTTTGTGGTTCAAACTGGTGTTGTTAGGGTTGAAAAGGAGATGCCTCGTGATTTGGCGCGCTCAGAATCACGATCGCCGTCTCGCAATAGGAGGAGGCGTTCCCCGTCTCCGGCGGTGGGCCATAGGTACAGCAAGAGAAGCCGAAGGGACAGAAGCAGCCGCTCTCCCTATTCCTCCTCCTCATATTCTCATAGCAGACGTAAAAGTCGCTCTCCAACTCCGAGACGTCGTAAAAGTCGCTCTCCAACTCCGAGACGTCGGAAAAGTCGTTCTCCAACTCCGAGGCGTCGGAAAAGTCGCTCTCCAACTCCAAGACGTCGGAAAAGTCGCTCTCCAATTTTGAAACGTTATAAGAGGCAGAAAAGTAGGAGCTCTTCATTGTCTCCTGTTCACAAATCTCCTACTTCAAGTCTCGGATCATTGGAGAAGAAAAATGCAAGTGAAAAATTAAGAAAGGAAGAGGAAGAGGAAGAACAGAAGAAAAGGCGACAACTTGAAGCAGAATTGAAGCTCATAGAAGAAGAGACCTCAAAAAGAGTGGAAGAAGCAATTCAGCGGAAAGTTGAGGAGAGCTTGAATTCTGAGGAGATTAAAGTAGAAATACAGACGCGGATGGAGGAGGGACGAAAGAAGCTTCTAAATGAAGTTGCAGCTCAACTTGAGAAGGAAAAGGAAGCAGCTATTATTGAGGCTAGACAGAAGGAGGAACAAGCCCAGAAAGAGAAAGAAGAGCTAGAAGGGATGCTTGAAGAGACTCGGAGAAGGGTAGAAGAAGCTCAAAGAAGGGAAGCTTTGGAGCAGCAGAGGAGGGAGGAGGAGCGGTACAGAGAGCTAGAAGAGCTCCAGAGACAAAAGGAAGAGGCGATGCGAAGGAAGAAACAAGAGGAGGAGGAACAACGGTCTAACCAAATGAAGCTGTTGGGTAAGAACAAATCACGGCCAAAATTGTCATTTGCACTTGGATCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

451

Amino Acids

52.08

Weight (kDa)

10.27

Isoelectric Point (pI)

100.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 293 - 447 4e-42 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
AasI GACNNNNNNGTC 1 cut(s) 585
AatII GACGTC 3 cut(s) 610, 640, 700
AccBSI CCGCTC 2 cut(s) 543, 1201
AccII CGCG 2 cut(s) 439, 991
AciI CCGC 7 cut(s) 185, 227, 494, 541, 937, 991, 1201
AclI AACGTT 1 cut(s) 727
AclWI GGATC 3 cut(s) 805, 1338, 1351
AcoI YGGCCR 1 cut(s) 1319
AcsI RAATTY 1 cut(s) 958
AcyI GRCGYC 4 cut(s) 607, 637, 667, 697
AfaI GTAC 2 cut(s) 509, 1205
AfeI AGCGCT 1 cut(s) 85
AfiI CCNNNNNNNGG 3 cut(s) 249, 490, 497
AgsI TTSAA 9 cut(s) 182, 392, 413, 724, 789, 878, 889, 958, 1130
AjnI CCWGG 1 cut(s) 360
AloI GAACNNNNNNTCC 4 cut(s) 463, 495, 634, 666
Alw21I GWGCWC 3 cut(s) 36, 755, 1224
AlwI GGATC 3 cut(s) 805, 1338, 1351
Aor51HI AGCGCT 1 cut(s) 85
AoxI GGCC 5 cut(s) 100, 252, 296, 499, 1319
ApeKI GCWGC 6 cut(s) 86, 135, 537, 1031, 1058, 1180
ApoI RAATTY 1 cut(s) 958
Asp700I GAANNNNTTC 1 cut(s) 930
AspLEI GCGC 3 cut(s) 86, 439, 441
AspS9I GGNCC 4 cut(s) 100, 252, 296, 499
AsuHPI GGTGA 2 cut(s) 232, 287
AsuNHI GCTAGC 1 cut(s) 356
BamHI GGATCC 1 cut(s) 1343
BanII GRGCYC 3 cut(s) 307, 755, 1224
BarI GAAGNNNNNNTAC 2 cut(s) 739, 771
BauI CACGAG 1 cut(s) 426
Bbv12I GWGCWC 3 cut(s) 36, 755, 1224
BbvI GCAGC 6 cut(s) 73, 147, 549, 1043, 1070, 1192
BccI CCATC 2 cut(s) 91, 988
BceAI ACGGC 3 cut(s) 135, 442, 1334
BciT130I CCWGG 1 cut(s) 362
BfaI CTAG 4 cut(s) 357, 1074, 1115, 1214
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 8 cut(s) 87, 136, 228, 538, 541, 1032, 1059, 1181
BlsI GCNGC 8 cut(s) 88, 137, 229, 539, 542, 1033, 1060, 1182
Bme1390I CCNGG 1 cut(s) 362
BmgT120I GGNCC 4 cut(s) 100, 252, 296, 499
BmiI GGNNCC 2 cut(s) 368, 1345
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 4 cut(s) 131, 411, 1113, 1236
BmtI GCTAGC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 1208
BpuEI CTTGAG 2 cut(s) 291, 1061
BsaHI GRCGYC 4 cut(s) 607, 637, 667, 697
BsaI GGTCTC 2 cut(s) 29, 899
BsaJI CCNNGG 5 cut(s) 172, 299, 361, 376, 662
BsaXI ACNNNNNCTCC 4 cut(s) 463, 493, 1187, 1217
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 490, 497
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 5 cut(s) 172, 299, 361, 376, 662
BseGI GGATG 2 cut(s) 999, 1128
BseLI CCNNNNNNNGG 3 cut(s) 249, 490, 497
BseMII CTCAG 2 cut(s) 456, 954
BseNI ACTGG 1 cut(s) 400
BsePI GCGCGC 1 cut(s) 437
BseXI GCAGC 6 cut(s) 73, 147, 549, 1043, 1070, 1192
Bsh1236I CGCG 2 cut(s) 439, 991
Bsh1285I CGRYCG 1 cut(s) 455
BshFI GGCC 5 cut(s) 102, 254, 298, 501, 1321
BsiEI CGRYCG 1 cut(s) 455
BsiHKAI GWGCWC 3 cut(s) 36, 755, 1224
BsiSI CCGG 2 cut(s) 243, 491
BslFI GGGAC 3 cut(s) 130, 542, 1017
BslI CCNNNNNNNGG 3 cut(s) 249, 490, 497
BsmBI CGTCTC 4 cut(s) 465, 492, 598, 628
BsmFI GGGAC 3 cut(s) 130, 542, 1017
BsnI GGCC 5 cut(s) 102, 254, 298, 501, 1321
Bso31I GGTCTC 2 cut(s) 29, 899
Bsp1286I GDGCHC 4 cut(s) 36, 307, 755, 1224
Bsp143I GATC 3 cut(s) 452, 797, 1343
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 7 cut(s) 185, 227, 494, 541, 937, 991, 1201
BspANI GGCC 5 cut(s) 102, 254, 298, 501, 1321
BspCNI CTCAG 2 cut(s) 455, 955
BspFNI CGCG 2 cut(s) 439, 991
BspLI GGNNCC 2 cut(s) 368, 1345
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 3 cut(s) 805, 1338, 1351
BspQI GCTCTTC 3 cut(s) 760, 1104, 1212
BspTNI GGTCTC 2 cut(s) 29, 899
BsrBI CCGCTC 2 cut(s) 543, 1201
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 5 cut(s) 172, 299, 361, 376, 662
BssHII GCGCGC 1 cut(s) 437
BssMI GATC 3 cut(s) 452, 797, 1343
BssNI GRCGYC 4 cut(s) 607, 637, 667, 697
BssSI CACGAG 1 cut(s) 426
BssT1I CCWWGG 2 cut(s) 299, 376
Bst2BI CACGAG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 176, 1281
BstACI GRCGYC 4 cut(s) 607, 637, 667, 697
BstC8I GCNNGC 2 cut(s) 358, 439
BstDEI CTNAG 3 cut(s) 332, 442, 963
BstDSI CCRYGG 2 cut(s) 172, 376
BstF5I GGATG 2 cut(s) 999, 1128
BstFNI CGCG 2 cut(s) 439, 991
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 3 cut(s) 86, 439, 441
BstKTI GATC 3 cut(s) 455, 800, 1346
BstMBI GATC 3 cut(s) 452, 797, 1343
BstMCI CGRYCG 1 cut(s) 455
BstMWI GCNNNNNNNGC 4 cut(s) 211, 243, 519, 1219
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 360
BstUI CGCG 2 cut(s) 439, 991
BstV1I GCAGC 6 cut(s) 73, 147, 549, 1043, 1070, 1192
BstX2I RGATCY 1 cut(s) 1343
BstYI RGATCY 1 cut(s) 1343
BsuRI GGCC 5 cut(s) 102, 254, 298, 501, 1321
BtgI CCRYGG 2 cut(s) 172, 376
BtgZI GCGATG 1 cut(s) 1259
BtsCI GGATG 2 cut(s) 999, 1128
Cac8I GCNNGC 2 cut(s) 358, 439
CfoI GCGC 3 cut(s) 86, 439, 441
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 4 cut(s) 100, 252, 296, 499
CseI GACGC 3 cut(s) 226, 656, 997
Csp6I GTAC 2 cut(s) 508, 1204
CspCI CAANNNNNGTGG 2 cut(s) 900, 935
CviAII CATG 2 cut(s) 231, 377
CviQI GTAC 2 cut(s) 508, 1204
DdeI CTNAG 3 cut(s) 332, 442, 963
DpnI GATC 3 cut(s) 454, 799, 1345
DpnII GATC 3 cut(s) 452, 797, 1343
DrdI GACNNNNNNGTC 1 cut(s) 585
DseDI GACNNNNNNGTC 1 cut(s) 585
EaeI YGGCCR 1 cut(s) 1319
Ecl136II GAGCTC 2 cut(s) 753, 1222
Eco130I CCWWGG 2 cut(s) 299, 376
Eco24I GRGCYC 3 cut(s) 307, 755, 1224
Eco31I GGTCTC 2 cut(s) 29, 899
Eco47III AGCGCT 1 cut(s) 85
Eco53kI GAGCTC 2 cut(s) 753, 1222
EcoICRI GAGCTC 2 cut(s) 753, 1222
EcoRI GAATTC 1 cut(s) 958
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 299, 376
EcoT38I GRGCYC 3 cut(s) 307, 755, 1224
ErhI CCWWGG 2 cut(s) 299, 376
Esp3I CGTCTC 4 cut(s) 465, 492, 598, 628
FaeI CATG 2 cut(s) 234, 380
FaiI YATR 7 cut(s) 232, 378, 504, 565, 573, 732, 896
FalI AAGNNNNNCTT 4 cut(s) 1110, 1142, 1156, 1188
FaqI GGGAC 3 cut(s) 130, 542, 1017
FatI CATG 2 cut(s) 230, 376
Fnu4HI GCNGC 8 cut(s) 87, 136, 228, 538, 541, 1032, 1059, 1181
FokI GGATG 2 cut(s) 1006, 1135
FriOI GRGCYC 3 cut(s) 307, 755, 1224
Fsp4HI GCNGC 8 cut(s) 87, 136, 228, 538, 541, 1032, 1059, 1181
FspBI CTAG 4 cut(s) 357, 1074, 1115, 1214
GlaI GCGC 3 cut(s) 85, 438, 440
GluI GCNGC 8 cut(s) 87, 136, 228, 538, 541, 1032, 1059, 1181
GsuI CTGGAG 1 cut(s) 1208
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 5 cut(s) 102, 254, 298, 501, 1321
HapII CCGG 2 cut(s) 243, 491
HgaI GACGC 3 cut(s) 226, 656, 997
HhaI GCGC 3 cut(s) 86, 439, 441
Hin1I GRCGYC 4 cut(s) 607, 637, 667, 697
Hin1II CATG 2 cut(s) 234, 380
Hin6I GCGC 3 cut(s) 84, 437, 439
HinP1I GCGC 3 cut(s) 84, 437, 439
HindIII AAGCTT 2 cut(s) 1013, 1170
HinfI GANTC 3 cut(s) 158, 446, 1135
HpaII CCGG 2 cut(s) 243, 491
HphI GGTGA 2 cut(s) 232, 287
Hpy166II GTNNAC 2 cut(s) 348, 772
Hpy188III TCNNGA 4 cut(s) 263, 428, 450, 1225
Hpy8I GTNNAC 2 cut(s) 348, 772
Hpy99I CGWCG 4 cut(s) 612, 642, 672, 702
HpyAV CCTTC 7 cut(s) 519, 1039, 1075, 1112, 1137, 1158, 1245
HpyCH4III ACNGT 2 cut(s) 176, 1281
HpyCH4IV ACGT 5 cut(s) 580, 607, 637, 697, 727
HpyCH4V TGCA 3 cut(s) 818, 1031, 1337
HpyF10VI GCNNNNNNNGC 4 cut(s) 211, 243, 519, 1219
HpyF3I CTNAG 3 cut(s) 332, 442, 963
HpySE526I ACGT 5 cut(s) 580, 607, 637, 697, 727
Hsp92I GRCGYC 4 cut(s) 607, 637, 667, 697
Hsp92II CATG 2 cut(s) 234, 380
HspAI GCGC 3 cut(s) 84, 437, 439
Kzo9I GATC 3 cut(s) 452, 797, 1343
LguI GCTCTTC 3 cut(s) 760, 1104, 1212
LmnI GCTCC 5 cut(s) 234, 750, 1177, 1198, 1227
LpnPI CCDG 9 cut(s) 186, 256, 347, 374, 381, 504, 780, 1109, 1238
Lsp1109I GCAGC 6 cut(s) 73, 147, 549, 1043, 1070, 1192
LweI GCATC 4 cut(s) 131, 411, 1113, 1236
MaeI CTAG 4 cut(s) 357, 1074, 1115, 1214
MaeII ACGT 5 cut(s) 580, 607, 637, 697, 727
MaeIII GTNAC 1 cut(s) 238
MalI GATC 3 cut(s) 454, 799, 1345
MbiI CCGCTC 2 cut(s) 543, 1201
MboI GATC 3 cut(s) 452, 797, 1343
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 1 cut(s) 1343
MhlI GDGCHC 4 cut(s) 36, 307, 755, 1224
MluCI AATT 8 cut(s) 108, 351, 717, 827, 884, 930, 958, 1325
MlyI GAGTC 1 cut(s) 1129
MmeI TCCRAC 7 cut(s) 620, 620, 650, 650, 680, 680, 710
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 2 cut(s) 830, 972
MspA1I CMGCKG 1 cut(s) 937
MspI CCGG 2 cut(s) 243, 491
MspR9I CCNGG 1 cut(s) 362
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 2 cut(s) 439, 991
MwoI GCNNNNNNNGC 4 cut(s) 211, 243, 519, 1219
NcoI CCATGG 1 cut(s) 376
NdeII GATC 3 cut(s) 452, 797, 1343
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 234, 380
NlaIV GGNNCC 2 cut(s) 368, 1345
NmuCI GTSAC 1 cut(s) 238
PauI GCGCGC 1 cut(s) 437
PciSI GCTCTTC 3 cut(s) 760, 1104, 1212
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 646
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 2 cut(s) 158, 446
PkrI GCNGC 8 cut(s) 88, 137, 229, 539, 542, 1033, 1060, 1182
Ple19I CGATCG 1 cut(s) 455
PleI GAGTC 1 cut(s) 1129
PpsI GAGTC 1 cut(s) 1129
PsiI TTATAA 1 cut(s) 732
Psp124BI GAGCTC 2 cut(s) 755, 1224
Psp1406I AACGTT 1 cut(s) 727
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 368, 1345
PspPI GGNCC 4 cut(s) 100, 252, 296, 499
PsuI RGATCY 1 cut(s) 1343
PteI GCGCGC 1 cut(s) 437
PvuI CGATCG 1 cut(s) 455
RsaI GTAC 2 cut(s) 509, 1205
RsaNI GTAC 2 cut(s) 508, 1204
SacI GAGCTC 2 cut(s) 755, 1224
SapI GCTCTTC 3 cut(s) 760, 1104, 1212
SaqAI TTAA 2 cut(s) 830, 972
SatI GCNGC 8 cut(s) 87, 136, 228, 538, 541, 1032, 1059, 1181
Sau3AI GATC 3 cut(s) 452, 797, 1343
Sau96I GGNCC 4 cut(s) 100, 252, 296, 499
SchI GAGTC 1 cut(s) 1129
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 4 cut(s) 36, 307, 755, 1224
SfaNI GCATC 4 cut(s) 131, 411, 1113, 1236
SgrAI CRCCGGYG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 306, 1040
SmoI CTYRAG 2 cut(s) 306, 1040
Sse9I AATT 8 cut(s) 108, 351, 717, 827, 884, 930, 958, 1325
SsiI CCGC 7 cut(s) 185, 227, 494, 541, 937, 991, 1201
SspMI CTAG 4 cut(s) 357, 1074, 1115, 1214
SstI GAGCTC 2 cut(s) 755, 1224
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 2 cut(s) 299, 376
TaaI ACNGT 2 cut(s) 176, 1281
TaiI ACGT 5 cut(s) 583, 610, 640, 700, 730
TaqI TCGA 2 cut(s) 262, 338
TaqII GACCGA 1 cut(s) 11
TasI AATT 8 cut(s) 108, 351, 717, 827, 884, 930, 958, 1325
TauI GCSGC 2 cut(s) 230, 543
TfiI GAWTC 2 cut(s) 158, 446
Tru1I TTAA 2 cut(s) 830, 972
Tru9I TTAA 2 cut(s) 830, 972
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 6 cut(s) 86, 135, 537, 1031, 1058, 1180
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 747, 1038, 1307
TspGWI ACGGA 1 cut(s) 359
XapI RAATTY 1 cut(s) 958
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 4 cut(s) 357, 1074, 1115, 1214
ZraI GACGTC 3 cut(s) 608, 638, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.