MD15G1423300.v1.1

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0007060
Physical Location & Seq
Forward (+)
52459122 .. 52464315
5194 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1423300.v1.1.491

Sequence Viewer

Length: 543 bp
ATGAAGGTTAGTTTGCCATTTATTCAGTCAGATAATGACGAGAGAGAAGGGGAGGGGCGGCAACAAGAAGCAGAATTGAAACTGCTAGAAGAAGAGACTTCAAGGAGGGTGGAAGAAGCAATTCGTAGGAAAGTTGAGGAGAGCTTAAACTCCGATGAGATTAAAGTGGAAATACAGAGGCAGTTGGAGGAAGGACGGAAGAAGCTTCTTACTGAAGTGGCAGCGCAACTTGAGAAAGAAAAGGAAGCAGCTCTGGTTGAGGCTAGGCATAAGGAGGAACAAGCTCGAAAAGAGAAAGAAGAGCTAGAAGGGATGCTTGAAGAGAACCGGAGGAGAGTGGAAGAAGCTCAAAGAAGGGAGGCTTTGGAGCAGCAGCGGAGGGAGGAGGAGCGATACAGGGAACTGGAAGAGCTCCAGAGACAGAAAGAAGAGGCGTTGCGAAGGAAGAAACAAGAGGAGGAGGAAGCACGGTTGAATCAAATGAAACTGTTGGGTAAGAACAAATCCCGGCCAAAATTGTCATTTGCATTCGGGTCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

181

Amino Acids

21.63

Weight (kDa)

5.45

Isoelectric Point (pI)

83.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 22 - 177 8.5e-44 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 58, 376
AcoI YGGCCR 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 234
AgsI TTSAA 4 cut(s) 79, 102, 320, 475
AluBI AGCT 7 cut(s) 144, 205, 251, 284, 304, 347, 412
AluI AGCT 7 cut(s) 144, 205, 251, 284, 304, 347, 412
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 2 cut(s) 89, 412
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 4 cut(s) 221, 248, 370, 373
Asp700I GAANNNNTTC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 534
AsuC2I CCSGG 1 cut(s) 508
AvaII GGWCC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 4 cut(s) 233, 260, 382, 385
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 89, 412
BfaI CTAG 3 cut(s) 86, 264, 305
BisI GCNGC 5 cut(s) 59, 222, 249, 371, 374
BlsI GCNGC 5 cut(s) 60, 223, 250, 372, 375
Bme1390I CCNGG 1 cut(s) 508
Bme18I GGWCC 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 534
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 508
BsaWI WCCGGW 1 cut(s) 327
Bse1I ACTGG 1 cut(s) 408
BseGI GGATG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 408
BseRI GAGGAG 6 cut(s) 152, 346, 398, 401, 470, 473
BseXI GCAGC 4 cut(s) 233, 260, 382, 385
BshFI GGCC 1 cut(s) 511
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 2 cut(s) 328, 508
BsmAI GTCTC 2 cut(s) 89, 412
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 414
BspACI CCGC 2 cut(s) 58, 376
BspANI GGCC 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 535
BspQI GCTCTTC 2 cut(s) 294, 402
BsrI ACTGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 471, 489
Bst6I CTCTTC 5 cut(s) 87, 294, 315, 402, 423
BstF5I GGATG 1 cut(s) 318
BstHHI GCGC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 89, 412
BstSCI CCNGG 1 cut(s) 506
BstV1I GCAGC 4 cut(s) 233, 260, 382, 385
BsuRI GGCC 1 cut(s) 511
BtsCI GGATG 1 cut(s) 318
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 534
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 5 cut(s) 87, 294, 315, 402, 423
EarI CTCTTC 5 cut(s) 87, 294, 315, 402, 423
Ecl136II GAGCTC 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 414
FaiI YATR 1 cut(s) 270
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 346, 378
Fnu4HI GCNGC 5 cut(s) 59, 222, 249, 371, 374
FokI GGATG 1 cut(s) 325
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 5 cut(s) 59, 222, 249, 371, 374
FspBI CTAG 3 cut(s) 86, 264, 305
GlaI GCGC 1 cut(s) 225
GluI GCNGC 5 cut(s) 59, 222, 249, 371, 374
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 511
HapII CCGG 2 cut(s) 328, 508
HhaI GCGC 1 cut(s) 226
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 475
HpaII CCGG 2 cut(s) 328, 508
Hpy188I TCNGA 2 cut(s) 31, 154
Hpy188III TCNNGA 1 cut(s) 415
HpyAV CCTTC 5 cut(s) 41, 185, 302, 348, 435
HpyCH4III ACNGT 2 cut(s) 471, 489
HpyCH4V TGCA 1 cut(s) 527
HspAI GCGC 1 cut(s) 224
LguI GCTCTTC 2 cut(s) 294, 402
LmnI GCTCC 3 cut(s) 367, 388, 417
LpnPI CCDG 6 cut(s) 239, 341, 382, 389, 428, 521
Lsp1109I GCAGC 4 cut(s) 233, 260, 382, 385
LweI GCATC 1 cut(s) 303
MaeI CTAG 3 cut(s) 86, 264, 305
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 3 cut(s) 74, 120, 515
MmeI TCCRAC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 146, 162
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 2 cut(s) 328, 508
MspR9I CCNGG 1 cut(s) 508
Mva1269I GAATGC 1 cut(s) 527
NciI CCSGG 1 cut(s) 508
NlaIV GGNNCC 1 cut(s) 535
PciSI GCTCTTC 2 cut(s) 294, 402
PctI GAATGC 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 475
PkrI GCNGC 5 cut(s) 60, 223, 250, 372, 375
Psp124BI GAGCTC 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 1 cut(s) 534
SacI GAGCTC 1 cut(s) 414
SapI GCTCTTC 2 cut(s) 294, 402
SaqAI TTAA 2 cut(s) 146, 162
SatI GCNGC 5 cut(s) 59, 222, 249, 371, 374
Sau96I GGNCC 1 cut(s) 534
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 1 cut(s) 414
SetI ASST 8 cut(s) 9, 146, 207, 253, 286, 306, 349, 414
SfaNI GCATC 1 cut(s) 303
SinI GGWCC 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 3 cut(s) 74, 120, 515
SsiI CCGC 2 cut(s) 58, 376
SspMI CTAG 3 cut(s) 86, 264, 305
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 506
TaaI ACNGT 2 cut(s) 471, 489
TaqI TCGA 1 cut(s) 286
TasI AATT 3 cut(s) 74, 120, 515
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 2 cut(s) 146, 162
Tru9I TTAA 2 cut(s) 146, 162
TseI GCWGC 4 cut(s) 221, 248, 370, 373
TspDTI ATGAA 2 cut(s) 17, 497
TspGWI ACGGA 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 3 cut(s) 86, 264, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.