MD08G1229300.v1.1

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0007060
Physical Location & Seq
Forward (+)
29531393 .. 29535719
4327 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1229300.v1.1.491

Sequence Viewer

Length: 459 bp
ATGCCTCGTGACTTGGCACGGTCACAATCACGATCACCTTCTTATAGGCGAAGGCTTTCGCCATCTCCAGTGGGGTATAGGTCTAGCAGGAGAAGCCGCAGAGACAGAAGCCGGTCTCCATATTCCTCGTATTCTTATAGCAGAAATCGTTCTCCAACTCCAAGACGTCGTAAAAGTCGTTCACTGACCCCAAGATGTCATAAAACTCGTTCTCCAACCCCAAGACGCCGTAAAAGTCGTTCTCCAACCCCAAGACGCCGTAAAAGTCGTTCTCCAACCCCAAGACGCCGTAAAAGTCGTTCTCCAGTTTTGAAGCGCTATAAGAGGCAAAGAAGTAGGAGCTCCTCCTTGTCTCCTATTCGTAAATCTTCTAGTTCAAGTCTTGGATTGTTGGAGCAGAAAAATGCCAGTGAGAAATTGAGAAAGGAAGAAGAAGAAGAGAAGAAAAGGCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

153

Amino Acids

18.17

Weight (kDa)

12.0

Isoelectric Point (pI)

175.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 169
AciI CCGC 1 cut(s) 97
AcyI GRCGYC 4 cut(s) 166, 226, 256, 286
AfeI AGCGCT 1 cut(s) 317
AgsI TTSAA 2 cut(s) 313, 378
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 3 cut(s) 96, 120, 357
Aor51HI AGCGCT 1 cut(s) 317
Asp700I GAANNNNTTC 2 cut(s) 55, 148
AspLEI GCGC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 27
BanII GRGCYC 1 cut(s) 344
BauI CACGAG 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 344
BccI CCATC 1 cut(s) 70
BceAI ACGGC 3 cut(s) 213, 243, 273
BcoDI GTCTC 3 cut(s) 96, 120, 357
BfaI CTAG 2 cut(s) 84, 372
BfoI RGCGCY 1 cut(s) 319
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BpmI CTGGAG 2 cut(s) 51, 288
BsaHI GRCGYC 4 cut(s) 166, 226, 256, 286
BsaI GGTCTC 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 3 cut(s) 68, 305, 408
BseNI ACTGG 3 cut(s) 68, 305, 408
BseRI GAGGAG 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 112
BsmAI GTCTC 3 cut(s) 96, 120, 357
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 3 cut(s) 68, 305, 408
BssAI RCCGGY 1 cut(s) 111
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 4 cut(s) 166, 226, 256, 286
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 432
BstACI GRCGYC 4 cut(s) 166, 226, 256, 286
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 1 cut(s) 35
BstMAI GTCTC 3 cut(s) 96, 120, 357
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 93
BtsIMutI CAGTG 3 cut(s) 75, 182, 415
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 111
CseI GACGC 3 cut(s) 234, 264, 294
CviJI RGCY 5 cut(s) 55, 96, 111, 342, 451
CviKI_1 RGCY 5 cut(s) 55, 96, 111, 342, 451
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 120
Eco47III AGCGCT 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 344
FaiI YATR 6 cut(s) 45, 78, 121, 138, 201, 321
Fnu4HI GCNGC 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 2 cut(s) 84, 372
GlaI GCGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 2 cut(s) 51, 288
HaeII RGCGCY 1 cut(s) 319
HapII CCGG 1 cut(s) 112
HgaI GACGC 3 cut(s) 234, 264, 294
HhaI GCGC 1 cut(s) 318
Hin1I GRCGYC 4 cut(s) 166, 226, 256, 286
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 458
Hpy188III TCNNGA 2 cut(s) 8, 30
Hpy8I GTNNAC 1 cut(s) 182
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 45, 48
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 166
Hsp92I GRCGYC 4 cut(s) 166, 226, 256, 286
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 3 cut(s) 339, 347, 394
LpnPI CCDG 5 cut(s) 73, 81, 125, 318, 421
MaeI CTAG 2 cut(s) 84, 372
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 2 cut(s) 8, 21
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 6 cut(s) 360, 440, 443, 446, 449, 454
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 1 cut(s) 416
MmeI TCCRAC 5 cut(s) 179, 239, 269, 299, 372
MnlI CCTC 4 cut(s) 15, 136, 318, 355
MroXI GAANNNNTTC 2 cut(s) 55, 148
MspI CCGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 1 cut(s) 32
NmuCI GTSAC 2 cut(s) 8, 21
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PdmI GAANNNNTTC 2 cut(s) 55, 148
PkrI GCNGC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 344
PsrI GAACNNNNNNTAC 8 cut(s) 163, 195, 223, 253, 255, 283, 285, 315
SacI GAGCTC 1 cut(s) 344
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 344
SetI ASST 4 cut(s) 40, 83, 169, 344
Sse9I AATT 1 cut(s) 416
SsiI CCGC 1 cut(s) 97
SspMI CTAG 2 cut(s) 84, 372
SstI GAGCTC 1 cut(s) 344
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 169
TasI AATT 1 cut(s) 416
TauI GCSGC 1 cut(s) 99
TscAI CASTG 3 cut(s) 75, 189, 415
TseFI GTSAC 2 cut(s) 8, 21
Tsp45I GTSAC 2 cut(s) 8, 21
TspRI CASTG 3 cut(s) 75, 189, 415
XmnI GAANNNNTTC 2 cut(s) 55, 148
XspI CTAG 2 cut(s) 84, 372
ZraI GACGTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.