Rh5AG324700

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007060
Physical Location & Seq
Reverse (-)
48586495 .. 48591974
5480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG324700.1

Sequence Viewer

Length: 675 bp
ATGAAGGTTAGTTTGGCATACATTGTACTCGGAAAATCACGAGAGGGGGGGAGGAAAAAAAGTAGTGTGTATGGTGATTGGTGTTCAATTTCCATCGCAGTCTGGATTCAAAACATTCGGAAAAAAGAAAGCAGCAGTTCCCTTCTTGATAGGCCACTTTATTGCTTAACATATTTTCCTCTACACAGGCGACAACATGAAGCAGAATTGAAGCTCATAGAGGAAGAGACCTCAAAAAGAGTGGAAGAAGCAATTCAGCGGAAAGTTGAGGAGAGCTTGAATTCTGAGGAGATTAAAGTAGAAATACAGACGCGGATGGAGGAGGGACGAAAGAAGCTACTAATTGAAGTTGCAGCTCAACTTGAGAAGGAAAAGGAAGCAGCTATTATTGAGGCTAGACAGAAGGAGGAACAAGCCCAGAAAGAGAAAGAAGAGCTAGAAGGGATGCTTGAAGAGACTCAGAGAAGGGTAGAAGAAGCTCAAAGAAGGGAAGCTTTGGAGCAGCAGAGGAGGGAGGAGGAGCGGTACAGAGAGCTAGAAGAGCTCCAGAGACAAAAGGAAGAGGCGATGCGAAGGAAGAAACAAGAGGAGGAGGAACAGCGGTCTAACCAAATGAAGCTGTTGGGTAAGAACAAATCCCGGCCAAAATTGTCATTTGCACTTGGATCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

224

Amino Acids

26.63

Weight (kDa)

8.36

Isoelectric Point (pI)

74.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 66 - 221 1.5e-43 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 523
AccII CGCG 1 cut(s) 313
AciI CCGC 4 cut(s) 259, 313, 523, 601
AclWI GGATC 2 cut(s) 660, 673
AcoI YGGCCR 1 cut(s) 641
AcsI RAATTY 1 cut(s) 280
AfaI GTAC 2 cut(s) 27, 527
AgsI TTSAA 6 cut(s) 87, 110, 211, 280, 347, 452
AjuI GAANNNNNNNTTGG 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 3 cut(s) 221, 449, 544
AlwI GGATC 2 cut(s) 660, 673
AoxI GGCC 2 cut(s) 152, 641
ApeKI GCWGC 4 cut(s) 132, 353, 380, 502
ApoI RAATTY 1 cut(s) 280
Asp700I GAANNNNTTC 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 640
AsuHPI GGTGA 1 cut(s) 86
BamHI GGATCC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 546
BauI CACGAG 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 4 cut(s) 144, 365, 392, 514
BccI CCATC 2 cut(s) 101, 310
BcnI CCSGG 1 cut(s) 640
BcoDI GTCTC 3 cut(s) 221, 449, 544
BfaI CTAG 3 cut(s) 396, 437, 536
BisI GCNGC 4 cut(s) 133, 354, 381, 503
BlsI GCNGC 4 cut(s) 134, 355, 382, 504
Bme1390I CCNGG 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 667
BmrFI CCNGG 1 cut(s) 640
BmsI GCATC 2 cut(s) 435, 558
BpmI CTGGAG 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 640
BsaI GGTCTC 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
BseGI GGATG 2 cut(s) 321, 450
BseMII CTCAG 2 cut(s) 276, 473
BseRI GAGGAG 8 cut(s) 284, 302, 335, 523, 530, 533, 602, 605
BseXI GCAGC 4 cut(s) 144, 365, 392, 514
Bsh1236I CGCG 1 cut(s) 313
BshFI GGCC 2 cut(s) 154, 643
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 1 cut(s) 640
BslFI GGGAC 1 cut(s) 339
BsmAI GTCTC 3 cut(s) 221, 449, 544
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 2 cut(s) 154, 643
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 1 cut(s) 665
BspACI CCGC 4 cut(s) 259, 313, 523, 601
BspANI GGCC 2 cut(s) 154, 643
BspCNI CTCAG 2 cut(s) 277, 472
BspFNI CGCG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 667
BspPI GGATC 2 cut(s) 660, 673
BspQI GCTCTTC 2 cut(s) 426, 534
BspTNI GGTCTC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 523
BssMI GATC 1 cut(s) 665
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
Bst6I CTCTTC 5 cut(s) 219, 426, 447, 534, 555
BstDEI CTNAG 2 cut(s) 285, 459
BstF5I GGATG 2 cut(s) 321, 450
BstFNI CGCG 1 cut(s) 313
BstKTI GATC 1 cut(s) 668
BstMAI GTCTC 3 cut(s) 221, 449, 544
BstMBI GATC 1 cut(s) 665
BstMWI GCNNNNNNNGC 1 cut(s) 541
BstSCI CCNGG 1 cut(s) 638
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 4 cut(s) 144, 365, 392, 514
BstX2I RGATCY 1 cut(s) 665
BstYI RGATCY 1 cut(s) 665
BsuRI GGCC 2 cut(s) 154, 643
BtgZI GCGATG 2 cut(s) 79, 581
BtsCI GGATG 2 cut(s) 321, 450
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 26, 526
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 1 cut(s) 197
CviQI GTAC 2 cut(s) 26, 526
DdeI CTNAG 2 cut(s) 285, 459
DpnI GATC 1 cut(s) 667
DpnII GATC 1 cut(s) 665
EaeI YGGCCR 1 cut(s) 641
Eam1104I CTCTTC 5 cut(s) 219, 426, 447, 534, 555
EarI CTCTTC 5 cut(s) 219, 426, 447, 534, 555
Ecl136II GAGCTC 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 544
EcoRI GAATTC 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 546
FaeI CATG 1 cut(s) 200
FaiI YATR 5 cut(s) 19, 72, 172, 198, 218
FalI AAGNNNNNCTT 4 cut(s) 432, 464, 478, 510
FaqI GGGAC 1 cut(s) 339
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 133, 354, 381, 503
FokI GGATG 2 cut(s) 328, 457
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 4 cut(s) 133, 354, 381, 503
FspBI CTAG 3 cut(s) 396, 437, 536
GluI GCNGC 4 cut(s) 133, 354, 381, 503
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 2 cut(s) 154, 643
HapII CCGG 1 cut(s) 640
HgaI GACGC 1 cut(s) 319
Hin1II CATG 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 2 cut(s) 106, 457
HpaII CCGG 1 cut(s) 640
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 4 cut(s) 32, 120, 286, 462
Hpy188III TCNNGA 4 cut(s) 39, 103, 146, 547
HpyAV CCTTC 7 cut(s) 152, 361, 397, 434, 459, 480, 567
HpyCH4V TGCA 2 cut(s) 353, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 541
HpyF3I CTNAG 2 cut(s) 285, 459
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 665
LguI GCTCTTC 2 cut(s) 426, 534
LmnI GCTCC 3 cut(s) 499, 520, 549
LpnPI CCDG 5 cut(s) 88, 172, 431, 560, 653
Lsp1109I GCAGC 4 cut(s) 144, 365, 392, 514
LweI GCATC 2 cut(s) 435, 558
MaeI CTAG 3 cut(s) 396, 437, 536
MalI GATC 1 cut(s) 667
MbiI CCGCTC 1 cut(s) 523
MboI GATC 1 cut(s) 665
MboII GAAGA 8 cut(s) 236, 257, 443, 464, 485, 551, 572, 589
MflI RGATCY 1 cut(s) 665
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 6 cut(s) 87, 206, 252, 280, 342, 647
MlyI GAGTC 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 2 cut(s) 167, 294
MspA1I CMGCKG 2 cut(s) 259, 601
MspI CCGG 1 cut(s) 640
MspR9I CCNGG 1 cut(s) 640
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 541
NciI CCSGG 1 cut(s) 640
NdeII GATC 1 cut(s) 665
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 667
PciSI GCTCTTC 2 cut(s) 426, 534
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 4 cut(s) 134, 355, 382, 504
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Psp124BI GAGCTC 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 667
PsuI RGATCY 1 cut(s) 665
RsaI GTAC 2 cut(s) 27, 527
RsaNI GTAC 2 cut(s) 26, 526
SacI GAGCTC 1 cut(s) 546
SapI GCTCTTC 2 cut(s) 426, 534
SaqAI TTAA 2 cut(s) 167, 294
SatI GCNGC 4 cut(s) 133, 354, 381, 503
Sau3AI GATC 1 cut(s) 665
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 1 cut(s) 640
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 2 cut(s) 435, 558
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 6 cut(s) 87, 206, 252, 280, 342, 647
SsiI CCGC 4 cut(s) 259, 313, 523, 601
SspMI CTAG 3 cut(s) 396, 437, 536
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 638
TasI AATT 6 cut(s) 87, 206, 252, 280, 342, 647
TatI WGTACW 1 cut(s) 25
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 167, 294
Tru9I TTAA 2 cut(s) 167, 294
TseI GCWGC 4 cut(s) 132, 353, 380, 502
TspDTI ATGAA 3 cut(s) 17, 213, 629
XapI RAATTY 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 3 cut(s) 396, 437, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.