Prupe.1G568600_v2.0.a1

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007060
Physical Location & Seq
Forward (+)
46352470 .. 46358279
5810 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G568600.1

Sequence Viewer

Length: 912 bp
ATGCCTCGTGATTTGGCACGGTCGCAATCACGATCGCCTTCGTATAGGCAAAGGCGTTCGCCGTCTCCAGTGGGGCATAGAGGTAGCAGGAGAAGCCGAAGAGACAGAAGCCGGTCTCCGTATTCCTCGTATTCTTATAGCAGATGGAAAAGTCGTTCTATCTCCCCTAAGCGTCGTAGAAGTCGTTCTCCAACTCCAAGACGTCGTAAAAGTCGTTCTCCAACTCCAAGACGTCGTAAAAGTCGGTCTCCAACTCCAAGACGTCGTAAAAGTCGGTCTCCAGTCTTGAAGCGTTATAAGAGACAAAGAAGTAGGAGCTCCTCATTGTCTCCTATTCGTAAATCTTCTACTTCAAGTCTTGGATTGTTGGAGCAGAAAAATGCCAGTGAGAAATTGAGAAAGGAAGAAGAAGAAGAGAAGAAAAGGCGGCAACAGGAAGCAGAATTGAAACTGCTAGAAGAAGAGACTTCAAAGAGAGTGGAAGTAGCAATACGTACGAAAGTTGAGGAGAGCTTGAACTCCGTGGAGATTAAAGTGGAAATACAGAGGCAGTTGGAGGAGGGACGGAAGAAGCTTCTTACTGAAGTTGCAGCACTACTTGAGAAAGAAAAGGAAGCTGCTCTTGTTGAGGCTAGAAATAAAGAGGAACAAGCTCGAAAAGAGAGAGAAGAACTAGAAGGGATGCTTGAAGAGAACCGGAGGAGAGTAGAAGAAGCTCAAAGAAGGGAAGCTTTGGAGCAGCAGCGGAGGGAAGAGGAGCGGTACAGGGAGCTAGAAGAGCTCCAGAGACAAAAAGAAGAGGCATTGAGGAGGAAGAAACAAGAGGAGGAGGAAGCACGGTTGAACCAAATGAAATTGTTGGGTAAAAACAAATCCCGGCCAAAATTGTCGTTTGCAATTGGATCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

304

Amino Acids

36.29

Weight (kDa)

11.05

Isoelectric Point (pI)

131.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AatII GACGTC 3 cut(s) 205, 235, 265
AccBSI CCGCTC 1 cut(s) 760
AciI CCGC 3 cut(s) 427, 745, 760
AclWI GGATC 2 cut(s) 897, 910
AcoI YGGCCR 1 cut(s) 878
AcuI CTGAAG 1 cut(s) 603
AcyI GRCGYC 3 cut(s) 202, 232, 262
AfaI GTAC 2 cut(s) 496, 764
AgsI TTSAA 7 cut(s) 289, 354, 448, 471, 517, 689, 844
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
AluBI AGCT 9 cut(s) 318, 513, 574, 617, 653, 716, 731, 772, 781
AluI AGCT 9 cut(s) 318, 513, 574, 617, 653, 716, 731, 772, 781
Alw21I GWGCWC 2 cut(s) 320, 783
Alw26I GTCTC 9 cut(s) 69, 96, 120, 252, 282, 295, 333, 458, 781
AlwI GGATC 2 cut(s) 897, 910
AoxI GGCC 1 cut(s) 878
ApeKI GCWGC 4 cut(s) 590, 617, 739, 742
Asp700I GAANNNNTTC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 877
BamHI GGATCC 1 cut(s) 902
BanII GRGCYC 2 cut(s) 320, 783
BarI GAAGNNNNNNTAC 2 cut(s) 474, 506
BauI CACGAG 1 cut(s) 6
Bbv12I GWGCWC 2 cut(s) 320, 783
BbvI GCAGC 4 cut(s) 602, 604, 751, 754
BccI CCATC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 46
BcnI CCSGG 1 cut(s) 877
BcoDI GTCTC 9 cut(s) 69, 96, 120, 252, 282, 295, 333, 458, 781
BfaI CTAG 4 cut(s) 455, 633, 674, 773
BisI GCNGC 5 cut(s) 428, 591, 618, 740, 743
BlsI GCNGC 5 cut(s) 429, 592, 619, 741, 744
Bme1390I CCNGG 1 cut(s) 877
BmiI GGNNCC 1 cut(s) 904
BmrFI CCNGG 1 cut(s) 877
BmsI GCATC 1 cut(s) 672
BpmI CTGGAG 3 cut(s) 51, 264, 767
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 877
BsaAI YACGTR 1 cut(s) 494
BsaHI GRCGYC 3 cut(s) 202, 232, 262
BsaI GGTCTC 3 cut(s) 120, 252, 282
BsaJI CCNNGG 1 cut(s) 522
BsaWI WCCGGW 1 cut(s) 696
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 3 cut(s) 68, 281, 384
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 1 cut(s) 687
BseNI ACTGG 3 cut(s) 68, 281, 384
BseRI GAGGAG 8 cut(s) 310, 521, 572, 715, 770, 823, 839, 842
BseXI GCAGC 4 cut(s) 602, 604, 751, 754
Bsh1285I CGRYCG 2 cut(s) 23, 35
BshFI GGCC 1 cut(s) 880
BsiEI CGRYCG 2 cut(s) 23, 35
BsiHKAI GWGCWC 2 cut(s) 320, 783
BsiSI CCGG 3 cut(s) 112, 697, 877
BsiWI CGTACG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 576
BsmAI GTCTC 9 cut(s) 69, 96, 120, 252, 282, 295, 333, 458, 781
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 576
BsnI GGCC 1 cut(s) 880
Bso31I GGTCTC 3 cut(s) 120, 252, 282
Bsp1286I GDGCHC 2 cut(s) 320, 783
Bsp143I GATC 2 cut(s) 32, 902
BspACI CCGC 3 cut(s) 427, 745, 760
BspANI GGCC 1 cut(s) 880
BspLI GGNNCC 1 cut(s) 904
BspPI GGATC 2 cut(s) 897, 910
BspQI GCTCTTC 1 cut(s) 771
BspTNI GGTCTC 3 cut(s) 120, 252, 282
BsrBI CCGCTC 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 3 cut(s) 68, 281, 384
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 2 cut(s) 32, 902
BssNI GRCGYC 3 cut(s) 202, 232, 262
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 21, 840
Bst6I CTCTTC 7 cut(s) 94, 408, 456, 684, 747, 771, 792
BstACI GRCGYC 3 cut(s) 202, 232, 262
BstBAI YACGTR 1 cut(s) 494
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 687
BstKTI GATC 2 cut(s) 35, 905
BstMAI GTCTC 9 cut(s) 69, 96, 120, 252, 282, 295, 333, 458, 781
BstMBI GATC 2 cut(s) 32, 902
BstMCI CGRYCG 2 cut(s) 23, 35
BstMWI GCNNNNNNNGC 2 cut(s) 93, 778
BstSCI CCNGG 1 cut(s) 875
BstSNI TACGTA 1 cut(s) 494
BstV1I GCAGC 4 cut(s) 602, 604, 751, 754
BstX2I RGATCY 1 cut(s) 902
BstYI RGATCY 1 cut(s) 902
BsuRI GGCC 1 cut(s) 880
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 687
BtsIMutI CAGTG 2 cut(s) 75, 391
Cfr10I RCCGGY 1 cut(s) 111
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 495, 763
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviQI GTAC 2 cut(s) 495, 763
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 34, 904
DpnII GATC 2 cut(s) 32, 902
EaeI YGGCCR 1 cut(s) 878
Eam1104I CTCTTC 7 cut(s) 94, 408, 456, 684, 747, 771, 792
EarI CTCTTC 7 cut(s) 94, 408, 456, 684, 747, 771, 792
Ecl136II GAGCTC 2 cut(s) 318, 781
Eco105I TACGTA 1 cut(s) 494
Eco24I GRGCYC 2 cut(s) 320, 783
Eco31I GGTCTC 3 cut(s) 120, 252, 282
Eco53kI GAGCTC 2 cut(s) 318, 781
Eco57I CTGAAG 1 cut(s) 603
EcoICRI GAGCTC 2 cut(s) 318, 781
EcoT38I GRGCYC 2 cut(s) 320, 783
Esp3I CGTCTC 1 cut(s) 69
FaiI YATR 4 cut(s) 45, 78, 138, 297
FalI AAGNNNNNCTT 6 cut(s) 606, 638, 669, 701, 715, 747
FaqI GGGAC 1 cut(s) 576
Fnu4HI GCNGC 5 cut(s) 428, 591, 618, 740, 743
FokI GGATG 1 cut(s) 694
FriOI GRGCYC 2 cut(s) 320, 783
Fsp4HI GCNGC 5 cut(s) 428, 591, 618, 740, 743
FspBI CTAG 4 cut(s) 455, 633, 674, 773
GluI GCNGC 5 cut(s) 428, 591, 618, 740, 743
GsuI CTGGAG 3 cut(s) 51, 264, 767
HaeIII GGCC 1 cut(s) 880
HapII CCGG 3 cut(s) 112, 697, 877
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 3 cut(s) 202, 232, 262
HindIII AAGCTT 2 cut(s) 572, 729
HpaII CCGG 3 cut(s) 112, 697, 877
Hpy188III TCNNGA 4 cut(s) 8, 30, 286, 784
Hpy99I CGWCG 4 cut(s) 177, 207, 237, 267
HpyAV CCTTC 3 cut(s) 48, 671, 717
HpyCH4III ACNGT 2 cut(s) 21, 840
HpyCH4IV ACGT 4 cut(s) 202, 232, 262, 493
HpyCH4V TGCA 2 cut(s) 590, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 778
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 4 cut(s) 202, 232, 262, 493
Hsp92I GRCGYC 3 cut(s) 202, 232, 262
Kzo9I GATC 2 cut(s) 32, 902
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 7 cut(s) 315, 323, 370, 736, 757, 769, 786
Lsp1109I GCAGC 4 cut(s) 602, 604, 751, 754
LweI GCATC 1 cut(s) 672
MaeI CTAG 4 cut(s) 455, 633, 674, 773
MaeII ACGT 4 cut(s) 202, 232, 262, 493
MalI GATC 2 cut(s) 34, 904
MbiI CCGCTC 1 cut(s) 760
MboI GATC 2 cut(s) 32, 902
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 1 cut(s) 902
MhlI GDGCHC 2 cut(s) 320, 783
MluCI AATT 5 cut(s) 392, 443, 854, 884, 897
MmeI TCCRAC 5 cut(s) 215, 245, 275, 348, 534
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 745
MspI CCGG 3 cut(s) 112, 697, 877
MspR9I CCNGG 1 cut(s) 877
MunI CAATTG 1 cut(s) 897
MwoI GCNNNNNNNGC 2 cut(s) 93, 778
NciI CCSGG 1 cut(s) 877
NdeII GATC 2 cut(s) 32, 902
NlaIV GGNNCC 1 cut(s) 904
PciSI GCTCTTC 1 cut(s) 771
PcsI WCGNNNNNNNCGW 2 cut(s) 181, 211
PdmI GAANNNNTTC 1 cut(s) 184
Pfl23II CGTACG 1 cut(s) 494
PkrI GCNGC 5 cut(s) 429, 592, 619, 741, 744
Ple19I CGATCG 1 cut(s) 35
Ppu21I YACGTR 1 cut(s) 494
PsiI TTATAA 1 cut(s) 297
Psp124BI GAGCTC 2 cut(s) 320, 783
PspLI CGTACG 1 cut(s) 494
PspN4I GGNNCC 1 cut(s) 904
PsrI GAACNNNNNNTAC 4 cut(s) 169, 199, 201, 231
PsuI RGATCY 1 cut(s) 902
PvuI CGATCG 1 cut(s) 35
RsaI GTAC 2 cut(s) 496, 764
RsaNI GTAC 2 cut(s) 495, 763
SacI GAGCTC 2 cut(s) 320, 783
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 5 cut(s) 428, 591, 618, 740, 743
Sau3AI GATC 2 cut(s) 32, 902
ScrFI CCNGG 1 cut(s) 877
SduI GDGCHC 2 cut(s) 320, 783
SfaNI GCATC 1 cut(s) 672
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SnaBI TACGTA 1 cut(s) 494
Sse9I AATT 5 cut(s) 392, 443, 854, 884, 897
SsiI CCGC 3 cut(s) 427, 745, 760
SspMI CTAG 4 cut(s) 455, 633, 674, 773
SstI GAGCTC 2 cut(s) 320, 783
StyD4I CCNGG 1 cut(s) 875
TaaI ACNGT 2 cut(s) 21, 840
TaiI ACGT 4 cut(s) 205, 235, 265, 496
TaqI TCGA 1 cut(s) 655
TaqII GACCGA 2 cut(s) 234, 264
TasI AATT 5 cut(s) 392, 443, 854, 884, 897
TauI GCSGC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 2 cut(s) 75, 391
TseI GCWGC 4 cut(s) 590, 617, 739, 742
TspDTI ATGAA 1 cut(s) 866
TspGWI ACGGA 3 cut(s) 108, 511, 580
TspRI CASTG 2 cut(s) 75, 391
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 4 cut(s) 455, 633, 674, 773
ZraI GACGTC 3 cut(s) 203, 233, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.