Rh5BG335700

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007060
Physical Location & Seq
Reverse (-)
46782692 .. 46787802
5111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG335700.1

Sequence Viewer

Length: 927 bp
ATGCCTCGTGATTTGGCGCGCTCAGAATCACGATCGCCGTCTCGCAATAGGAGGAGGCGTTCCCCGTCTCCGGCGGTGGGCCATAGGTACAGCAAGAGAAGCCGAAGGGACAGAAGCAGCCGCTCTCCCTATTCCTCTTCATATTCTCATAGCAGACGTCGTAAAAGTCGCTCTCCAACTCCCAGACGTCGTAAAAGTCGCTCTCCAACTCCCAGACGTCGTAAAAGTCGTTCTCCAACTCCAAGGCGTCGTAAAAGTCTCTCTCCAACTCCAAAACGTCGGAAAAGTCGCTCTCCAATTTTGAAACGTTATAGGAGGCAGAGAAGTAGGAGCTCTTCATTGTCTCCTGTTCACAAATCTCCTACTTCTAGCCTCGGATCATTGGAGAAGAAAAATGCAAGTGAAAAATTAAGAAAGGAAGAGGAAGAACAGAAGAAAAGGCGACAACATGAAGCAGAATTGAAGCTCATAGAAGAAGAGACCTCAAAAAGAGTGGAAGAAGCAATTCAGCGGAAAGTTGAGGAGAGCTTGAATTCTGAGGAGATTAAAGTAGAAATACAGACGCGGATGGAGGAGGGACGAAAGAAGCTACTAAATGAAGTTGCAGCTCAACTTGAGAAGGAAAAGGAAGCAGCTATTATTGAGGCTAGACAGAAGGAGGAACAAGCCCAGAAAGAGAAAGAAGAGCTAGAAGGGATGCTTGAAGAGACTCAGAGAAGGGTAGAAGAAGCTCAAAGAAGGGAAGCTTTGGAGCAGCAGAGGAGGGAGGAGGAGCGGTACAGAGAGCTAGAAGAGCTCCAGAGACAAAAGGAAGAGGCAATGCGAAGGAAGAAACAAGAGGAGGAGGAACAGCGGTCTAACCAAATGAAGCTGTTGGGTAAGAACAAATCCCGGCCAAAATTGTCATTTGCACTTGGATCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

308

Amino Acids

36.87

Weight (kDa)

10.91

Isoelectric Point (pI)

132.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 150 - 305 5e-43 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 160, 190, 220
AccBSI CCGCTC 2 cut(s) 123, 775
AccII CGCG 2 cut(s) 19, 565
AciI CCGC 6 cut(s) 74, 121, 511, 565, 775, 853
AclI AACGTT 1 cut(s) 307
AclWI GGATC 3 cut(s) 385, 912, 925
AcoI YGGCCR 1 cut(s) 893
AcsI RAATTY 1 cut(s) 532
AcyI GRCGYC 4 cut(s) 157, 187, 217, 247
AfaI GTAC 2 cut(s) 89, 779
AfiI CCNNNNNNNGG 2 cut(s) 70, 77
AgsI TTSAA 4 cut(s) 304, 463, 532, 704
AloI GAACNNNNNNTCC 2 cut(s) 43, 75
Alw21I GWGCWC 2 cut(s) 335, 798
Alw26I GTCTC 7 cut(s) 45, 72, 263, 348, 473, 701, 796
AlwI GGATC 3 cut(s) 385, 912, 925
AoxI GGCC 2 cut(s) 79, 893
ApeKI GCWGC 4 cut(s) 117, 605, 632, 754
ApoI RAATTY 1 cut(s) 532
Asp700I GAANNNNTTC 1 cut(s) 504
AspLEI GCGC 2 cut(s) 19, 21
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 892
BamHI GGATCC 1 cut(s) 917
BanII GRGCYC 2 cut(s) 335, 798
BarI GAAGNNNNNNTAC 2 cut(s) 319, 351
BauI CACGAG 1 cut(s) 6
Bbv12I GWGCWC 2 cut(s) 335, 798
BbvI GCAGC 4 cut(s) 129, 617, 644, 766
BccI CCATC 1 cut(s) 562
BceAI ACGGC 1 cut(s) 22
BcnI CCSGG 1 cut(s) 892
BcoDI GTCTC 7 cut(s) 45, 72, 263, 348, 473, 701, 796
BfaI CTAG 4 cut(s) 369, 648, 689, 788
BisI GCNGC 5 cut(s) 118, 121, 606, 633, 755
BlsI GCNGC 5 cut(s) 119, 122, 607, 634, 756
Bme1390I CCNGG 1 cut(s) 892
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 919
BmrFI CCNGG 1 cut(s) 892
BmsI GCATC 1 cut(s) 687
BpmI CTGGAG 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 635
BpuMI CCSGG 1 cut(s) 892
BsaHI GRCGYC 4 cut(s) 157, 187, 217, 247
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 242, 373
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 761, 791
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 77
Bse3DI GCAATG 1 cut(s) 825
BseDI CCNNGG 2 cut(s) 242, 373
BseGI GGATG 2 cut(s) 573, 702
BseLI CCNNNNNNNGG 2 cut(s) 70, 77
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 3 cut(s) 36, 528, 725
BsePI GCGCGC 1 cut(s) 17
BseRI GAGGAG 9 cut(s) 67, 536, 554, 587, 775, 782, 785, 854, 857
BseXI GCAGC 4 cut(s) 129, 617, 644, 766
Bsh1236I CGCG 2 cut(s) 19, 565
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 2 cut(s) 81, 895
BsiEI CGRYCG 1 cut(s) 35
BsiHKAI GWGCWC 2 cut(s) 335, 798
BsiSI CCGG 2 cut(s) 71, 892
BslFI GGGAC 2 cut(s) 122, 591
BslI CCNNNNNNNGG 2 cut(s) 70, 77
BsmAI GTCTC 7 cut(s) 45, 72, 263, 348, 473, 701, 796
BsmBI CGTCTC 2 cut(s) 45, 72
BsmFI GGGAC 2 cut(s) 122, 591
BsnI GGCC 2 cut(s) 81, 895
Bso31I GGTCTC 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 335, 798
Bsp143I GATC 3 cut(s) 32, 377, 917
BspACI CCGC 6 cut(s) 74, 121, 511, 565, 775, 853
BspANI GGCC 2 cut(s) 81, 895
BspCNI CTCAG 3 cut(s) 35, 529, 724
BspFNI CGCG 2 cut(s) 19, 565
BspLI GGNNCC 1 cut(s) 919
BspPI GGATC 3 cut(s) 385, 912, 925
BspQI GCTCTTC 3 cut(s) 340, 678, 786
BspTNI GGTCTC 1 cut(s) 473
BsrBI CCGCTC 2 cut(s) 123, 775
BsrDI GCAATG 1 cut(s) 825
BssECI CCNNGG 2 cut(s) 242, 373
BssHII GCGCGC 1 cut(s) 17
BssMI GATC 3 cut(s) 32, 377, 917
BssNI GRCGYC 4 cut(s) 157, 187, 217, 247
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 6
Bst6I CTCTTC 8 cut(s) 142, 340, 414, 471, 678, 699, 786, 807
BstACI GRCGYC 4 cut(s) 157, 187, 217, 247
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 22, 537, 711
BstF5I GGATG 2 cut(s) 573, 702
BstFNI CGCG 2 cut(s) 19, 565
BstHHI GCGC 2 cut(s) 19, 21
BstKTI GATC 3 cut(s) 35, 380, 920
BstMAI GTCTC 7 cut(s) 45, 72, 263, 348, 473, 701, 796
BstMBI GATC 3 cut(s) 32, 377, 917
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 2 cut(s) 99, 793
BstSCI CCNGG 1 cut(s) 890
BstUI CGCG 2 cut(s) 19, 565
BstV1I GCAGC 4 cut(s) 129, 617, 644, 766
BstX2I RGATCY 1 cut(s) 917
BstYI RGATCY 1 cut(s) 917
BsuRI GGCC 2 cut(s) 81, 895
BtsCI GGATG 2 cut(s) 573, 702
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 2 cut(s) 19, 21
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 2 cut(s) 236, 571
Csp6I GTAC 2 cut(s) 88, 778
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 1 cut(s) 449
CviQI GTAC 2 cut(s) 88, 778
DdeI CTNAG 3 cut(s) 22, 537, 711
DpnI GATC 3 cut(s) 34, 379, 919
DpnII GATC 3 cut(s) 32, 377, 917
EaeI YGGCCR 1 cut(s) 893
Eam1104I CTCTTC 8 cut(s) 142, 340, 414, 471, 678, 699, 786, 807
EarI CTCTTC 8 cut(s) 142, 340, 414, 471, 678, 699, 786, 807
Ecl136II GAGCTC 2 cut(s) 333, 796
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 2 cut(s) 335, 798
Eco31I GGTCTC 1 cut(s) 473
Eco53kI GAGCTC 2 cut(s) 333, 796
EcoICRI GAGCTC 2 cut(s) 333, 796
EcoRI GAATTC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 2 cut(s) 335, 798
ErhI CCWWGG 1 cut(s) 242
Esp3I CGTCTC 2 cut(s) 45, 72
FaeI CATG 1 cut(s) 452
FaiI YATR 6 cut(s) 84, 142, 150, 312, 450, 470
FalI AAGNNNNNCTT 4 cut(s) 684, 716, 730, 762
FaqI GGGAC 2 cut(s) 122, 591
FatI CATG 1 cut(s) 448
Fnu4HI GCNGC 5 cut(s) 118, 121, 606, 633, 755
FokI GGATG 2 cut(s) 580, 709
FriOI GRGCYC 2 cut(s) 335, 798
Fsp4HI GCNGC 5 cut(s) 118, 121, 606, 633, 755
FspBI CTAG 4 cut(s) 369, 648, 689, 788
GlaI GCGC 2 cut(s) 18, 20
GluI GCNGC 5 cut(s) 118, 121, 606, 633, 755
GsuI CTGGAG 1 cut(s) 782
HaeIII GGCC 2 cut(s) 81, 895
HapII CCGG 2 cut(s) 71, 892
HgaI GACGC 2 cut(s) 236, 571
HhaI GCGC 2 cut(s) 19, 21
Hin1I GRCGYC 4 cut(s) 157, 187, 217, 247
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 2 cut(s) 17, 19
HinP1I GCGC 2 cut(s) 17, 19
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 2 cut(s) 26, 709
HpaII CCGG 2 cut(s) 71, 892
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 5 cut(s) 25, 282, 377, 538, 714
Hpy188III TCNNGA 3 cut(s) 8, 30, 799
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 5 cut(s) 162, 192, 222, 252, 282
HpyAV CCTTC 7 cut(s) 99, 613, 649, 686, 711, 732, 819
HpyCH4IV ACGT 5 cut(s) 157, 187, 217, 277, 307
HpyCH4V TGCA 3 cut(s) 398, 605, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 793
HpyF3I CTNAG 3 cut(s) 22, 537, 711
HpySE526I ACGT 5 cut(s) 157, 187, 217, 277, 307
Hsp92I GRCGYC 4 cut(s) 157, 187, 217, 247
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 2 cut(s) 17, 19
Kzo9I GATC 3 cut(s) 32, 377, 917
LguI GCTCTTC 3 cut(s) 340, 678, 786
LmnI GCTCC 4 cut(s) 330, 751, 772, 801
LpnPI CCDG 7 cut(s) 84, 196, 226, 360, 683, 812, 905
Lsp1109I GCAGC 4 cut(s) 129, 617, 644, 766
LweI GCATC 1 cut(s) 687
MaeI CTAG 4 cut(s) 369, 648, 689, 788
MaeII ACGT 5 cut(s) 157, 187, 217, 277, 307
MalI GATC 3 cut(s) 34, 379, 919
MbiI CCGCTC 2 cut(s) 123, 775
MboI GATC 3 cut(s) 32, 377, 917
MflI RGATCY 1 cut(s) 917
MhlI GDGCHC 2 cut(s) 335, 798
MluCI AATT 6 cut(s) 297, 407, 458, 504, 532, 899
MlyI GAGTC 1 cut(s) 703
MmeI TCCRAC 5 cut(s) 200, 230, 260, 260, 290
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 2 cut(s) 410, 546
MspA1I CMGCKG 2 cut(s) 511, 853
MspI CCGG 2 cut(s) 71, 892
MspR9I CCNGG 1 cut(s) 892
MvnI CGCG 2 cut(s) 19, 565
MwoI GCNNNNNNNGC 2 cut(s) 99, 793
NciI CCSGG 1 cut(s) 892
NdeII GATC 3 cut(s) 32, 377, 917
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 1 cut(s) 919
PauI GCGCGC 1 cut(s) 17
PciSI GCTCTTC 3 cut(s) 340, 678, 786
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 5 cut(s) 119, 122, 607, 634, 756
Ple19I CGATCG 1 cut(s) 35
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
Psp124BI GAGCTC 2 cut(s) 335, 798
Psp1406I AACGTT 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 919
PspPI GGNCC 1 cut(s) 79
PsrI GAACNNNNNNTAC 2 cut(s) 214, 246
PsuI RGATCY 1 cut(s) 917
PteI GCGCGC 1 cut(s) 17
PvuI CGATCG 1 cut(s) 35
RsaI GTAC 2 cut(s) 89, 779
RsaNI GTAC 2 cut(s) 88, 778
SacI GAGCTC 2 cut(s) 335, 798
SapI GCTCTTC 3 cut(s) 340, 678, 786
SaqAI TTAA 2 cut(s) 410, 546
SatI GCNGC 5 cut(s) 118, 121, 606, 633, 755
Sau3AI GATC 3 cut(s) 32, 377, 917
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 1 cut(s) 892
SduI GDGCHC 2 cut(s) 335, 798
SfaNI GCATC 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
Sse9I AATT 6 cut(s) 297, 407, 458, 504, 532, 899
SsiI CCGC 6 cut(s) 74, 121, 511, 565, 775, 853
SspMI CTAG 4 cut(s) 369, 648, 689, 788
SstI GAGCTC 2 cut(s) 335, 798
StyD4I CCNGG 1 cut(s) 890
StyI CCWWGG 1 cut(s) 242
TaiI ACGT 5 cut(s) 160, 190, 220, 280, 310
TasI AATT 6 cut(s) 297, 407, 458, 504, 532, 899
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 2 cut(s) 410, 546
Tru9I TTAA 2 cut(s) 410, 546
TseI GCWGC 4 cut(s) 117, 605, 632, 754
TspDTI ATGAA 5 cut(s) 129, 327, 465, 612, 881
XapI RAATTY 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 4 cut(s) 369, 648, 689, 788
ZraI GACGTC 3 cut(s) 158, 188, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.