AT1G11125

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014354
Physical Location & Seq
Forward (+)
3718652 .. 3719832
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11125.1

Sequence Viewer

Length: 798 bp
ATGGGTTGTTGCCTCAGCTCCGCCACCGCCGACAAGAAAGATGATCCTGTCTCCGGCAAGAACACCGCACGGCCTCCATCTGTTATCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACCACATTGCTCACTTCCTCTAACGACAATTCGACGGTGGAGAAGACTACGTTGACAAAGATTCAAGAAGAAGAGGAGAAGAAACCCGGGATTGTTGTCGACGTTGCTCAAGAACCGGTTTTGACCAAGCCCAGTTTGGTTGAACCGGAAAAAGGATCGGAGGTTTCGGAGAATTGTAGTTTAAGCGAGAGTTTGCTTTCGATCGTGAATAAGTACGACGAGGAAGAAGTGAAGCAGATGAAATCTCATGTAGTGAGACAGAGATCTCCGGCGAAATCTCGGAACCGGGTCATGGTTAGTTATCCAAACCGGAGAACCGATATGTCTCCACGTAAGAGAAACAACGAAGAAGAAGCTGGCTCGGTGAGGCTGGTTCCGTCGGCTACGGGTACGAGAGACTCGACTGAAAGATCCGAGAGAAGGTCTAGATCGCCGGCGATGAACAGGTCCGTCATGATGGGCCCAACTCGGAGTCAACAGAGTACAGACAGTTGTGGAGCAATGAGGAGACAAAGCCAGTCTCCGGGTCGGGTCAGACTCAATCCGAATATGAACGGGTCGGATCAAGAGTGTAATCATCACAAGTGGCCGGGTTCTATTGGAAATTACAATTCTGCCCCTAACGACTCGTTTGAGAACCCTCTTGTTTCATTAGAGTGTTTCATCTTCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.36

Weight (kDa)

6.38

Isoelectric Point (pI)

79.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 222
AciI CCGC 3 cut(s) 21, 27, 66
AclWI GGATC 4 cut(s) 38, 286, 528, 693
AcoI YGGCCR 1 cut(s) 710
AfaI GTAC 3 cut(s) 338, 514, 607
AfiI CCNNNNNNNGG 5 cut(s) 53, 275, 415, 543, 646
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 2 cut(s) 188, 266
AluBI AGCT 2 cut(s) 18, 479
AluI AGCT 2 cut(s) 18, 479
Alw26I GTCTC 7 cut(s) 55, 89, 373, 453, 513, 625, 648
AlwI GGATC 4 cut(s) 38, 286, 528, 693
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 3 cut(s) 71, 583, 710
ApaI GGGCCC 1 cut(s) 587
AsiGI ACCGGT 1 cut(s) 238
AspS9I GGNCC 3 cut(s) 570, 583, 584
AsuC2I CCSGG 5 cut(s) 210, 211, 410, 648, 714
AsuHPI GGTGA 1 cut(s) 499
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 570
BaeGI GKGCMC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 14
BccI CCATC 2 cut(s) 85, 574
BceAI ACGGC 1 cut(s) 86
BcnI CCSGG 5 cut(s) 210, 211, 410, 648, 714
BcoDI GTCTC 7 cut(s) 55, 89, 373, 453, 513, 625, 648
BfaI CTAG 1 cut(s) 549
BglII AGATCT 1 cut(s) 386
Bme1390I CCNGG 5 cut(s) 210, 211, 410, 648, 714
Bme18I GGWCC 1 cut(s) 570
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 570, 583, 584
BmiI GGNNCC 3 cut(s) 407, 498, 585
BmrFI CCNGG 5 cut(s) 210, 211, 410, 648, 714
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 216
BpuMI CCSGG 5 cut(s) 210, 211, 410, 648, 714
Bsa29I ATCGAT 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 209
BsaWI WCCGGW 3 cut(s) 238, 268, 432
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 275, 415, 543, 646
Bse118I RCCGGY 2 cut(s) 238, 556
Bse1I ACTGG 2 cut(s) 255, 640
Bse3DI GCAATG 2 cut(s) 128, 630
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 209
BseLI CCNNNNNNNGG 5 cut(s) 53, 275, 415, 543, 646
BseMI GCAATG 2 cut(s) 128, 630
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 2 cut(s) 255, 640
BseRI GAGGAG 2 cut(s) 212, 643
BseSI GKGCMC 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 3 cut(s) 73, 585, 712
BshTI ACCGGT 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 209
BslI CCNNNNNNNGG 5 cut(s) 53, 275, 415, 543, 646
BsmAI GTCTC 7 cut(s) 55, 89, 373, 453, 513, 625, 648
BsnI GGCC 3 cut(s) 73, 585, 712
BsoBI CYCGRG 1 cut(s) 209
Bsp120I GGGCCC 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 7 cut(s) 43, 278, 324, 386, 533, 551, 685
BspACI CCGC 3 cut(s) 21, 27, 66
BspANI GGCC 3 cut(s) 73, 585, 712
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 87
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 3 cut(s) 407, 498, 585
BspPI GGATC 4 cut(s) 38, 286, 528, 693
BsrDI GCAATG 2 cut(s) 128, 630
BsrFI RCCGGY 2 cut(s) 238, 556
BsrI ACTGG 2 cut(s) 255, 640
BssAI RCCGGY 2 cut(s) 238, 556
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 7 cut(s) 43, 278, 324, 386, 533, 551, 685
Bst4CI ACNGT 3 cut(s) 100, 160, 614
Bst6I CTCTTC 2 cut(s) 87, 189
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 481, 558
BstDEI CTNAG 1 cut(s) 14
BstKTI GATC 7 cut(s) 46, 281, 327, 389, 536, 554, 688
BstMAI GTCTC 7 cut(s) 55, 89, 373, 453, 513, 625, 648
BstMBI GATC 7 cut(s) 43, 278, 324, 386, 533, 551, 685
BstMCI CGRYCG 1 cut(s) 327
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 5 cut(s) 208, 209, 408, 646, 712
BstSLI GKGCMC 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 2 cut(s) 386, 533
BstYI RGATCY 2 cut(s) 386, 533
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 3 cut(s) 73, 585, 712
BsuTUI ATCGAT 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 575
Cac8I GCNNGC 2 cut(s) 481, 558
CciI TCATGA 1 cut(s) 576
Cfr10I RCCGGY 2 cut(s) 238, 556
Cfr13I GGNCC 3 cut(s) 570, 583, 584
Cfr9I CCCGGG 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 3 cut(s) 337, 513, 606
CspAI ACCGGT 1 cut(s) 238
CviAII CATG 3 cut(s) 371, 415, 577
CviQI GTAC 3 cut(s) 337, 513, 606
DdeI CTNAG 1 cut(s) 14
DpnI GATC 7 cut(s) 45, 280, 326, 388, 535, 553, 687
DpnII GATC 7 cut(s) 43, 278, 324, 386, 533, 551, 685
EaeI YGGCCR 1 cut(s) 710
Eam1104I CTCTTC 2 cut(s) 87, 189
EarI CTCTTC 2 cut(s) 87, 189
EciI GGCGGA 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 587
FaeI CATG 3 cut(s) 374, 418, 580
FaiI YATR 6 cut(s) 372, 416, 446, 578, 674, 796
FatI CATG 3 cut(s) 370, 414, 576
FblI GTMKAC 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 587
FspBI CTAG 1 cut(s) 549
HaeIII GGCC 3 cut(s) 73, 585, 712
Hin1II CATG 3 cut(s) 374, 418, 580
HincII GTYRAC 3 cut(s) 177, 223, 599
HindII GTYRAC 3 cut(s) 177, 223, 599
HinfI GANTC 5 cut(s) 184, 521, 595, 660, 749
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 3 cut(s) 177, 223, 599
Hpy188I TCNGA 9 cut(s) 121, 283, 292, 405, 538, 594, 659, 669, 685
Hpy188III TCNNGA 6 cut(s) 188, 233, 328, 549, 577, 689
Hpy8I GTNNAC 3 cut(s) 177, 223, 599
Hpy99I CGWCG 4 cut(s) 160, 227, 344, 505
HpyAV CCTTC 1 cut(s) 537
HpyCH4III ACNGT 3 cut(s) 100, 160, 614
HpyCH4IV ACGT 3 cut(s) 173, 225, 454
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 3 cut(s) 173, 225, 454
Hsp92II CATG 3 cut(s) 374, 418, 580
KroI GCCGGC 1 cut(s) 556
KroNI GCCGGC 1 cut(s) 558
Kzo9I GATC 7 cut(s) 43, 278, 324, 386, 533, 551, 685
LmnI GCTCC 2 cut(s) 23, 620
MaeI CTAG 1 cut(s) 549
MaeII ACGT 3 cut(s) 173, 225, 454
MalI GATC 7 cut(s) 45, 280, 326, 388, 535, 553, 687
MboI GATC 7 cut(s) 43, 278, 324, 386, 533, 551, 685
MboII GAAGA 9 cut(s) 104, 178, 203, 206, 214, 359, 482, 485, 781
MflI RGATCY 2 cut(s) 386, 533
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 4 cut(s) 151, 295, 727, 733
MlyI GAGTC 4 cut(s) 515, 604, 654, 743
MmeI TCCRAC 1 cut(s) 663
MnlI CCTC 9 cut(s) 23, 84, 151, 190, 277, 337, 483, 621, 774
MreI CGCCGGCG 1 cut(s) 556
MroNI GCCGGC 1 cut(s) 556
MseI TTAA 1 cut(s) 305
MslI CAYNNNNRTG 1 cut(s) 778
MspR9I CCNGG 5 cut(s) 210, 211, 410, 648, 714
NaeI GCCGGC 1 cut(s) 558
NciI CCSGG 5 cut(s) 210, 211, 410, 648, 714
NdeII GATC 7 cut(s) 43, 278, 324, 386, 533, 551, 685
NgoMIV GCCGGC 1 cut(s) 556
NlaIII CATG 3 cut(s) 374, 418, 580
NlaIV GGNNCC 3 cut(s) 407, 498, 585
PagI TCATGA 1 cut(s) 576
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PdiI GCCGGC 1 cut(s) 558
PfeI GAWTC 1 cut(s) 184
PinAI ACCGGT 1 cut(s) 238
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 4 cut(s) 515, 603, 654, 743
PpsI GAGTC 4 cut(s) 515, 603, 654, 743
Ppu21I YACGTR 1 cut(s) 455
PshAI GACNNNNGTC 1 cut(s) 101
PspN4I GGNNCC 3 cut(s) 407, 498, 585
PspOMI GGGCCC 1 cut(s) 583
PspPI GGNCC 3 cut(s) 570, 583, 584
PsuI RGATCY 2 cut(s) 386, 533
PvuI CGATCG 1 cut(s) 327
RsaI GTAC 3 cut(s) 338, 514, 607
RsaNI GTAC 3 cut(s) 337, 513, 606
RseI CAYNNNNRTG 1 cut(s) 778
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 305
Sau3AI GATC 7 cut(s) 43, 278, 324, 386, 533, 551, 685
Sau96I GGNCC 3 cut(s) 570, 583, 584
SchI GAGTC 4 cut(s) 515, 604, 654, 743
ScrFI CCNGG 5 cut(s) 210, 211, 410, 648, 714
SduI GDGCHC 1 cut(s) 587
SetI ASST 8 cut(s) 20, 176, 228, 288, 457, 481, 548, 572
SgrAI CRCCGGYG 1 cut(s) 556
SinI GGWCC 1 cut(s) 570
SmaI CCCGGG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 778
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 4 cut(s) 151, 295, 727, 733
SsiI CCGC 3 cut(s) 21, 27, 66
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 5 cut(s) 208, 209, 408, 646, 712
TaaI ACNGT 3 cut(s) 100, 160, 614
TaiI ACGT 3 cut(s) 176, 228, 457
TaqI TCGA 5 cut(s) 87, 155, 222, 323, 524
TasI AATT 4 cut(s) 151, 295, 727, 733
TatI WGTACW 1 cut(s) 605
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TspDTI ATGAA 6 cut(s) 105, 377, 578, 689, 762, 775
TspGWI ACGGA 2 cut(s) 489, 562
TspMI CCCGGG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 570
XbaI TCTAGA 1 cut(s) 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmaI CCCGGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.