Rh5BG052900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014354
Physical Location & Seq
Forward (+)
4204171 .. 4205668
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG052900.1

Sequence Viewer

Length: 951 bp
ATGGGGTGCTGTCTCAGCTCCTCCGCCACCGACAAGTCCTCAGCTCCCAATCAGCCCCCACATTTCCAGAGGTCCGACGAGAGCAGAGCTCCGCCGCCGGTGGTGGACGAAGAGACCGTGAAGGAAGTGCTTTCAGTTTCAGAGACACCGAGGCAGAGGCCAACCCAAGAACAAGAACCAGTGTTTCAAGATCAAATTCAAGAACAGAAGAGGACCCAAGAACCGGTGTTTGAAGTGAAACTGGATCGGGTTCAAGAACAGAAGAGGGTCGTCGACGTCCAAGAACTACTACCGGTCTTTGAGGCGGAGGAGAACTGGGAGAAGAGAATACCCATTTCCGGCGGCGGCGGCGGCGACGGAGAGATCTCGGAGCAGGCGTCGGAGATTTGCAGCCTGCAGAGCGAGAGCTTCTCGGCGACGACGGTAACCAGAGACGAAGACGATGAGGTTCAACAGAGGGTAGTCAACAACAACAGCAACAGAGTGTCGCCGGTGAAATTACAGAAAAACCCCCGGGACGTCGGGTTTAGGCCGGGCCGGGTGGTGGGTAAGTCTCCGACGCGGAGGACGGACGCGTCGCCGGGTCGGAGGTACGGTCCGAATGGGAATGCAGTCGGGTCAGCGAGGGTGGTTCAACCGGGTCAGGGTGGTAGGCGGGTCGGGTCGAGGACGGAGTCGAACCGGCGTGACCCGGGTGAGAGCTCGGGTCGGAGGTCCAGATCGCCAGCGACAAGGATTGCGGAGAACGGTGGAGTTAATAGAGCAAATGTGGGTCGGAGCCCGTCCGCTAATAGGAGGTATCCGGGTCGGAGTCCGGTTGGTCCGGTTGAGAGTTCGAATAGTTCGACCCGGAGAATATTTGAGGAGCCCAAAATGGAGGAGGGTAAATGGCCCGCAAATGAGTCCCTTGATAACCCACATGTTTCTTTGGAATGCTTCATTTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

34.87

Weight (kDa)

6.81

Isoelectric Point (pI)

81.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 574
AatII GACGTC 2 cut(s) 279, 522
AccI GTMKAC 1 cut(s) 273
AccII CGCG 2 cut(s) 562, 575
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 195
AcyI GRCGYC 3 cut(s) 276, 377, 519
AfaI GTAC 1 cut(s) 593
AfiI CCNNNNNNNGG 5 cut(s) 223, 338, 544, 644, 792
AflIII ACRYGT 2 cut(s) 573, 919
AgeI ACCGGT 2 cut(s) 223, 292
AgsI TTSAA 6 cut(s) 188, 200, 233, 254, 452, 635
AluBI AGCT 5 cut(s) 18, 44, 89, 408, 702
AluI AGCT 5 cut(s) 18, 44, 89, 408, 702
Alw21I GWGCWC 2 cut(s) 91, 704
Alw26I GTCTC 5 cut(s) 17, 107, 137, 426, 558
AlwI GGATC 1 cut(s) 252
Ama87I CYCGRG 3 cut(s) 513, 691, 703
AoxI GGCC 4 cut(s) 158, 530, 535, 890
ApeKI GCWGC 1 cut(s) 390
ApoI RAATTY 1 cut(s) 195
AsiGI ACCGGT 2 cut(s) 223, 292
AspS9I GGNCC 7 cut(s) 72, 213, 535, 596, 714, 821, 891
AsuHPI GGTGA 2 cut(s) 505, 707
AsuII TTCGAA 1 cut(s) 836
AvaI CYCGRG 3 cut(s) 513, 691, 703
AvaII GGWCC 5 cut(s) 72, 213, 596, 714, 821
BanII GRGCYC 4 cut(s) 91, 704, 782, 870
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 2 cut(s) 91, 704
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 402
BciVI GTATCC 1 cut(s) 810
BcoDI GTCTC 5 cut(s) 17, 107, 137, 426, 558
BfmI CTRYAG 1 cut(s) 395
BfuI GTATCC 1 cut(s) 810
BglII AGATCT 1 cut(s) 363
BisI GCNGC 6 cut(s) 95, 343, 346, 349, 352, 391
BlsI GCNGC 6 cut(s) 96, 344, 347, 350, 353, 392
Bme18I GGWCC 5 cut(s) 72, 213, 596, 714, 821
BmeT110I CYCGRG 3 cut(s) 513, 691, 703
BmgT120I GGNCC 7 cut(s) 72, 213, 535, 596, 714, 821, 891
BmiI GGNNCC 3 cut(s) 215, 779, 867
BmrI ACTGGG 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 4 cut(s) 73, 105, 395, 427
Bpu10I CCTNAGC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 836
BsaHI GRCGYC 3 cut(s) 276, 377, 519
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 149, 512, 513, 691
BsaWI WCCGGW 4 cut(s) 223, 292, 814, 823
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 580, 610
Bsc4I CCNNNNNNNGG 5 cut(s) 223, 338, 544, 644, 792
Bse118I RCCGGY 5 cut(s) 97, 223, 292, 490, 681
Bse1I ACTGG 3 cut(s) 179, 246, 320
BseDI CCNNGG 4 cut(s) 149, 512, 513, 691
BseLI CCNNNNNNNGG 5 cut(s) 223, 338, 544, 644, 792
BseMII CTCAG 2 cut(s) 28, 54
BseNI ACTGG 3 cut(s) 179, 246, 320
BseRI GAGGAG 4 cut(s) 10, 323, 878, 893
BseXI GCAGC 1 cut(s) 402
Bsh1236I CGCG 2 cut(s) 562, 575
BshFI GGCC 4 cut(s) 160, 532, 537, 892
BshTI ACCGGT 2 cut(s) 223, 292
BsiHKAI GWGCWC 2 cut(s) 91, 704
BsiHKCI CYCGRG 3 cut(s) 513, 691, 703
BslFI GGGAC 2 cut(s) 530, 889
BslI CCNNNNNNNGG 5 cut(s) 223, 338, 544, 644, 792
BsmAI GTCTC 5 cut(s) 17, 107, 137, 426, 558
BsmBI CGTCTC 1 cut(s) 426
BsmFI GGGAC 2 cut(s) 530, 889
BsmI GAATGC 2 cut(s) 613, 938
BsnI GGCC 4 cut(s) 160, 532, 537, 892
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 3 cut(s) 513, 691, 703
Bsp119I TTCGAA 1 cut(s) 836
Bsp1286I GDGCHC 4 cut(s) 91, 704, 782, 870
Bsp143I GATC 4 cut(s) 190, 244, 363, 719
BspANI GGCC 4 cut(s) 160, 532, 537, 892
BspCNI CTCAG 2 cut(s) 27, 53
BspFNI CGCG 2 cut(s) 562, 575
BspLI GGNNCC 3 cut(s) 215, 779, 867
BspMAI CTGCAG 1 cut(s) 399
BspPI GGATC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 836
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 5 cut(s) 97, 223, 292, 490, 681
BsrI ACTGG 3 cut(s) 179, 246, 320
BssAI RCCGGY 5 cut(s) 97, 223, 292, 490, 681
BssECI CCNNGG 4 cut(s) 149, 512, 513, 691
BssMI GATC 4 cut(s) 190, 244, 363, 719
BssNI GRCGYC 3 cut(s) 276, 377, 519
Bst4CI ACNGT 4 cut(s) 118, 424, 596, 749
Bst6I CTCTTC 4 cut(s) 105, 203, 257, 317
BstACI GRCGYC 3 cut(s) 276, 377, 519
BstBI TTCGAA 1 cut(s) 836
BstC8I GCNNGC 4 cut(s) 375, 395, 726, 894
BstDEI CTNAG 2 cut(s) 14, 40
BstEII GGTNACC 1 cut(s) 424
BstFNI CGCG 2 cut(s) 562, 575
BstKTI GATC 4 cut(s) 193, 247, 366, 722
BstMAI GTCTC 5 cut(s) 17, 107, 137, 426, 558
BstMBI GATC 4 cut(s) 190, 244, 363, 719
BstMWI GCNNNNNNNGC 4 cut(s) 15, 348, 351, 399
BstNSI RCATGY 1 cut(s) 923
BstPI GGTNACC 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 395
BstUI CGCG 2 cut(s) 562, 575
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BsuI GTATCC 1 cut(s) 810
BsuRI GGCC 4 cut(s) 160, 532, 537, 892
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 4 cut(s) 375, 395, 726, 894
Cfr10I RCCGGY 5 cut(s) 97, 223, 292, 490, 681
Cfr13I GGNCC 7 cut(s) 72, 213, 535, 596, 714, 821, 891
Cfr9I CCCGGG 2 cut(s) 513, 691
CpoI CGGWCCG 1 cut(s) 596
CseI GACGC 4 cut(s) 366, 564, 568, 581
Csp6I GTAC 1 cut(s) 592
CspAI ACCGGT 2 cut(s) 223, 292
CspI CGGWCCG 1 cut(s) 596
CviAII CATG 1 cut(s) 920
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 2 cut(s) 14, 40
DpnI GATC 4 cut(s) 192, 246, 365, 721
DpnII GATC 4 cut(s) 190, 244, 363, 719
DrdI GACNNNNNNGTC 1 cut(s) 574
DseDI GACNNNNNNGTC 1 cut(s) 574
Eam1104I CTCTTC 4 cut(s) 105, 203, 257, 317
EarI CTCTTC 4 cut(s) 105, 203, 257, 317
EciI GGCGGA 3 cut(s) 13, 81, 320
Ecl136II GAGCTC 2 cut(s) 89, 702
Eco24I GRGCYC 4 cut(s) 91, 704, 782, 870
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 5 cut(s) 72, 213, 596, 714, 821
Eco53kI GAGCTC 2 cut(s) 89, 702
Eco88I CYCGRG 3 cut(s) 513, 691, 703
Eco91I GGTNACC 1 cut(s) 424
EcoICRI GAGCTC 2 cut(s) 89, 702
EcoO109I RGGNCCY 1 cut(s) 213
EcoO65I GGTNACC 1 cut(s) 424
EcoT38I GRGCYC 4 cut(s) 91, 704, 782, 870
Esp3I CGTCTC 1 cut(s) 426
FaeI CATG 1 cut(s) 923
FaiI YATR 2 cut(s) 921, 949
FaqI GGGAC 2 cut(s) 530, 889
FatI CATG 1 cut(s) 919
FauI CCCGC 2 cut(s) 648, 901
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 95, 343, 346, 349, 352, 391
FriOI GRGCYC 4 cut(s) 91, 704, 782, 870
Fsp4HI GCNGC 6 cut(s) 95, 343, 346, 349, 352, 391
GluI GCNGC 6 cut(s) 95, 343, 346, 349, 352, 391
HaeIII GGCC 4 cut(s) 160, 532, 537, 892
HgaI GACGC 4 cut(s) 366, 564, 568, 581
Hin1I GRCGYC 3 cut(s) 276, 377, 519
Hin1II CATG 1 cut(s) 923
HincII GTYRAC 2 cut(s) 274, 466
HindII GTYRAC 2 cut(s) 274, 466
HinfI GANTC 3 cut(s) 674, 811, 902
HphI GGTGA 2 cut(s) 505, 707
Hpy166II GTNNAC 3 cut(s) 106, 274, 466
Hpy188III TCNNGA 5 cut(s) 67, 188, 200, 254, 717
Hpy8I GTNNAC 3 cut(s) 106, 274, 466
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 4 cut(s) 118, 424, 596, 749
HpyCH4IV ACGT 2 cut(s) 276, 519
HpyCH4V TGCA 3 cut(s) 390, 397, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 348, 351, 399
HpyF3I CTNAG 2 cut(s) 14, 40
HpySE526I ACGT 2 cut(s) 276, 519
Hsp92I GRCGYC 3 cut(s) 276, 377, 519
Hsp92II CATG 1 cut(s) 923
Kzo9I GATC 4 cut(s) 190, 244, 363, 719
LmnI GCTCC 6 cut(s) 23, 49, 94, 370, 777, 865
Lsp1109I GCAGC 1 cut(s) 402
MaeII ACGT 2 cut(s) 276, 519
MaeIII GTNAC 2 cut(s) 424, 686
MalI GATC 4 cut(s) 192, 246, 365, 721
MboI GATC 4 cut(s) 190, 244, 363, 719
MboII GAAGA 5 cut(s) 122, 220, 274, 334, 449
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 4 cut(s) 91, 704, 782, 870
MluCI AATT 2 cut(s) 195, 497
MluI ACGCGT 1 cut(s) 573
MlyI GAGTC 3 cut(s) 683, 820, 911
MmeI TCCRAC 7 cut(s) 99, 360, 566, 581, 689, 755, 788
MseI TTAA 1 cut(s) 756
Mva1269I GAATGC 2 cut(s) 613, 938
MvnI CGCG 2 cut(s) 562, 575
MwoI GCNNNNNNNGC 4 cut(s) 15, 348, 351, 399
NdeII GATC 4 cut(s) 190, 244, 363, 719
NlaIII CATG 1 cut(s) 923
NlaIV GGNNCC 3 cut(s) 215, 779, 867
NmeAIII GCCGAG 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 686
NspI RCATGY 1 cut(s) 923
NspV TTCGAA 1 cut(s) 836
PciI ACATGT 1 cut(s) 919
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 374, 842
PctI GAATGC 2 cut(s) 613, 938
PflFI GACNNNGTC 1 cut(s) 673
PinAI ACCGGT 2 cut(s) 223, 292
PkrI GCNGC 6 cut(s) 96, 344, 347, 350, 353, 392
PleI GAGTC 3 cut(s) 682, 819, 910
PpsI GAGTC 3 cut(s) 682, 819, 910
PpuMI RGGWCCY 1 cut(s) 213
PscI ACATGT 1 cut(s) 919
Psp124BI GAGCTC 2 cut(s) 91, 704
Psp5II RGGWCCY 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 424
PspN4I GGNNCC 3 cut(s) 215, 779, 867
PspPI GGNCC 7 cut(s) 72, 213, 535, 596, 714, 821, 891
PspPPI RGGWCCY 1 cut(s) 213
PstI CTGCAG 1 cut(s) 399
PsuI RGATCY 1 cut(s) 363
PsyI GACNNNGTC 1 cut(s) 673
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
Rsr2I CGGWCCG 1 cut(s) 596
RsrII CGGWCCG 1 cut(s) 596
SacI GAGCTC 2 cut(s) 91, 704
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 6 cut(s) 95, 343, 346, 349, 352, 391
Sau3AI GATC 4 cut(s) 190, 244, 363, 719
Sau96I GGNCC 7 cut(s) 72, 213, 535, 596, 714, 821, 891
SchI GAGTC 3 cut(s) 683, 820, 911
SduI GDGCHC 4 cut(s) 91, 704, 782, 870
SfcI CTRYAG 1 cut(s) 395
SfuI TTCGAA 1 cut(s) 836
SgrAI CRCCGGYG 2 cut(s) 97, 490
SgrDI CGTCGACG 1 cut(s) 272
SinI GGWCC 5 cut(s) 72, 213, 596, 714, 821
SmaI CCCGGG 2 cut(s) 515, 693
Sse9I AATT 2 cut(s) 195, 497
SspI AATATT 1 cut(s) 858
SstI GAGCTC 2 cut(s) 91, 704
TaaI ACNGT 4 cut(s) 118, 424, 596, 749
TaiI ACGT 2 cut(s) 279, 522
TaqI TCGA 5 cut(s) 273, 665, 677, 836, 845
TasI AATT 2 cut(s) 195, 497
TauI GCSGC 5 cut(s) 97, 345, 348, 351, 354
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 1 cut(s) 390
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 1 cut(s) 928
TspGWI ACGGA 3 cut(s) 372, 584, 686
TspMI CCCGGG 2 cut(s) 513, 691
TspRI CASTG 1 cut(s) 186
Tth111I GACNNNGTC 1 cut(s) 673
VpaK11BI GGWCC 5 cut(s) 72, 213, 596, 714, 821
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 923
XmaI CCCGGG 2 cut(s) 513, 691
XmiI GTMKAC 1 cut(s) 273
ZraI GACGTC 2 cut(s) 277, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.