Rorug04G0426900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014354
Physical Location & Seq
Reverse (-)
58561356 .. 58562611
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0426900.1

Sequence Viewer

Length: 1098 bp
ATGGCGGCAAATGGTACCTTGATCGGCGAGCAGGGTTATGACCGAGCTGAAGAAGTGAAGCAATTCGACGACTCCAAGCTCGGAGTCAAAGGCCTCGTCGACTCGGGTCTCTCCTCCATCCCCCGAATCTTTATCCACCCGCCCGAAATATTACAGCAATTCCAGCCCACGACCCGACCCAACGCCCAACCAATCCCCACCATCGACCTCTCCGACCTCCACTCCGATCGCCGCTGCTCCATCGTTGACCAAGTCAGTGGCGCGTGCCGCAACTTCGGTTTCTTCCAGATCACCAACCACGGCATACCGTCGGTGGTTCTCGACCGTACGATCGCCGCCGTCAAGGCCTTCCACGAGCAGCCGACTGAGGTCAAGGCGCGGTTCTACCGTAGAGAGATGGGCCTGGGCGTATCGTATTTCTCCAACATTGACCTGTACACGTCCAAAGCCGCCAGCTGGCGCGACACACTTCAGATGAGGCTCAGCCCCGTGCCGGCTGCCGCCGACGACGTTCCGGAGGTTTGTAGGGACAAAATTGCGGCATGGAACCGGCAGATCCAACGGCTGGGAGAGGAACTGCTGGGGCTGATGAGTGAAGGGCTGGGATTGCCTGCGGAGAAGCTGAAGGAGATGACGTGTCTGCAAGGGAGGGCGATGGTGGGCAACTACTACCCGCCCTGCCCGCAACCTGACCTCACCGTAGGGCTTACGTCACACAGTGACCCTGGAGTGTTGACCGTGCTGCTTCAAGATCACATTGGTGGGTTGCAGGTTAAGCACGATGATGCTTGGTTGGATGTGAAACCCGTCTCCGGTGCTCTTGTAATCAACGTTGGTGATTTACTCCAGATTATTTCAAACGAGGAATACAAAAGCGTGGATCACCGGGTGATGGCGAATCCACAACACGAGGCGCGTGTCGCAATAGCCGTGTTTTTGAATCCGAGCAATAGAGAGGGCGTGTTTGGTCCGTTGCCGGAGCTGGTCTCGTCAGAGAAGCCAGCTCTCTACAGAGAGTTCAAGTTTACGGAATTCATAATGAGGTTCTTCAAGAAAGAATTGAATGGCAAATCTTTAGTAAATTATTATAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

365

Amino Acids

40.65

Weight (kDa)

6.02

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 65 - 162 4.7e-19 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 218 - 315 1.5e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1089
Acc36I ACCTGC 1 cut(s) 760
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 1 cut(s) 99
AccII CGCG 4 cut(s) 263, 379, 462, 916
AccIII TCCGGA 1 cut(s) 514
AclI AACGTT 1 cut(s) 831
AclWI GGATC 2 cut(s) 550, 888
AcsI RAATTY 1 cut(s) 1031
AcuI CTGAAG 3 cut(s) 69, 455, 644
AdeI CACNNNGTG 2 cut(s) 719, 889
AfaI GTAC 3 cut(s) 16, 328, 437
AfiI CCNNNNNNNGG 5 cut(s) 456, 493, 565, 812, 892
AflIII ACRYGT 2 cut(s) 438, 635
AgsI TTSAA 6 cut(s) 749, 858, 940, 1021, 1051, 1063
AjiI CACGTC 2 cut(s) 441, 636
AjnI CCWGG 2 cut(s) 402, 724
AleI CACNNNNGTG 1 cut(s) 759
AluBI AGCT 6 cut(s) 47, 79, 456, 622, 982, 1004
AluI AGCT 6 cut(s) 47, 79, 456, 622, 982, 1004
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 3 cut(s) 113, 814, 991
AlwI GGATC 2 cut(s) 550, 888
Ama87I CYCGRG 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 3 cut(s) 91, 345, 400
ApeKI GCWGC 4 cut(s) 234, 358, 497, 742
ApoI RAATTY 1 cut(s) 1031
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
Asp700I GAANNNNTTC 1 cut(s) 62
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 4 cut(s) 263, 379, 462, 916
AspS9I GGNCC 2 cut(s) 400, 968
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 5 cut(s) 283, 688, 848, 875, 901
AvaI CYCGRG 1 cut(s) 103
AvaII GGWCC 1 cut(s) 968
BanI GGYRCC 1 cut(s) 14
BauI CACGAG 2 cut(s) 353, 908
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 4 cut(s) 221, 370, 484, 729
BccI CCATC 6 cut(s) 125, 209, 248, 391, 649, 886
BceAI ACGGC 4 cut(s) 316, 323, 578, 914
BciT130I CCWGG 2 cut(s) 404, 726
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 3 cut(s) 113, 814, 991
BfmI CTRYAG 1 cut(s) 1009
BfuAI ACCTGC 1 cut(s) 760
BglI GCCNNNNNGGC 1 cut(s) 344
BlpI GCTNAGC 1 cut(s) 482
Bme1390I CCNGG 3 cut(s) 404, 726, 887
Bme18I GGWCC 1 cut(s) 968
BmeT110I CYCGRG 1 cut(s) 103
BmgBI CACGTC 2 cut(s) 441, 636
BmgT120I GGNCC 2 cut(s) 400, 968
BmiI GGNNCC 2 cut(s) 16, 548
BmrFI CCNGG 3 cut(s) 404, 726, 887
BmsI GCATC 1 cut(s) 775
BoxI GACNNNNGTC 2 cut(s) 105, 368
BplI GAGNNNNNCTC 2 cut(s) 971, 1003
BpmI CTGGAG 2 cut(s) 747, 830
Bpu1102I GCTNAGC 1 cut(s) 482
BpuMI CCSGG 1 cut(s) 887
BsaI GGTCTC 2 cut(s) 113, 991
BsaJI CCNNGG 3 cut(s) 298, 403, 724
BsaWI WCCGGW 2 cut(s) 514, 812
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 620, 650
Bsc4I CCNNNNNNNGG 5 cut(s) 456, 493, 565, 812, 892
Bse118I RCCGGY 2 cut(s) 493, 549
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 2 cut(s) 404, 726
BseDI CCNNGG 3 cut(s) 298, 403, 724
BseGI GGATG 2 cut(s) 117, 802
BseLI CCNNNNNNNGG 5 cut(s) 456, 493, 565, 812, 892
BseMII CTCAG 2 cut(s) 357, 496
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 4 cut(s) 221, 370, 484, 729
BseYI CCCAGC 3 cut(s) 565, 580, 601
Bsh1236I CGCG 4 cut(s) 263, 379, 462, 916
Bsh1285I CGRYCG 3 cut(s) 229, 325, 333
BshFI GGCC 3 cut(s) 93, 347, 402
BshNI GGYRCC 1 cut(s) 14
BsiEI CGRYCG 3 cut(s) 229, 325, 333
BsiHKAI GWGCWC 1 cut(s) 820
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 6 cut(s) 494, 515, 550, 813, 886, 977
BsiWI CGTACG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 5 cut(s) 456, 493, 565, 812, 892
BsmAI GTCTC 3 cut(s) 113, 814, 991
BsmBI CGTCTC 1 cut(s) 814
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 3 cut(s) 93, 347, 402
Bso31I GGTCTC 2 cut(s) 113, 991
BsoBI CYCGRG 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 820
Bsp13I TCCGGA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 7 cut(s) 21, 226, 288, 330, 555, 751, 880
Bsp1720I GCTNAGC 1 cut(s) 482
BspANI GGCC 3 cut(s) 93, 347, 402
BspCNI CTCAG 2 cut(s) 358, 495
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 4 cut(s) 263, 379, 462, 916
BspLI GGNNCC 2 cut(s) 16, 548
BspMI ACCTGC 1 cut(s) 760
BspPI GGATC 2 cut(s) 550, 888
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 2 cut(s) 113, 991
BsrFI RCCGGY 2 cut(s) 493, 549
BsrGI TGTACA 1 cut(s) 435
BssAI RCCGGY 2 cut(s) 493, 549
BssECI CCNNGG 3 cut(s) 298, 403, 724
BssMI GATC 7 cut(s) 21, 226, 288, 330, 555, 751, 880
BssSI CACGAG 2 cut(s) 353, 908
Bst2BI CACGAG 2 cut(s) 353, 908
Bst2UI CCWGG 2 cut(s) 404, 726
Bst4CI ACNGT 6 cut(s) 309, 326, 389, 700, 719, 739
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 8 cut(s) 29, 265, 454, 458, 495, 612, 683, 1002
BstDEI CTNAG 2 cut(s) 366, 482
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 2 cut(s) 117, 802
BstFNI CGCG 4 cut(s) 263, 379, 462, 916
BstHHI GCGC 4 cut(s) 263, 379, 462, 916
BstKTI GATC 7 cut(s) 24, 229, 291, 333, 558, 754, 883
BstMAI GTCTC 3 cut(s) 113, 814, 991
BstMBI GATC 7 cut(s) 21, 226, 288, 330, 555, 751, 880
BstMCI CGRYCG 3 cut(s) 229, 325, 333
BstMWI GCNNNNNNNGC 7 cut(s) 163, 267, 344, 607, 682, 775, 920
BstNI CCWGG 2 cut(s) 404, 726
BstPAI GACNNNNGTC 2 cut(s) 105, 368
BstSCI CCNGG 3 cut(s) 402, 724, 885
BstSFI CTRYAG 1 cut(s) 1009
BstUI CGCG 4 cut(s) 263, 379, 462, 916
BstV1I GCAGC 4 cut(s) 221, 370, 484, 729
BstX2I RGATCY 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 257
BstYI RGATCY 1 cut(s) 555
BsuRI GGCC 3 cut(s) 93, 347, 402
BtgI CCRYGG 1 cut(s) 298
BtgZI GCGATG 1 cut(s) 668
BtrI CACGTC 2 cut(s) 441, 636
BtsCI GGATG 2 cut(s) 117, 802
BtsIMutI CAGTG 2 cut(s) 262, 724
BveI ACCTGC 1 cut(s) 760
Cac8I GCNNGC 8 cut(s) 29, 265, 454, 458, 495, 612, 683, 1002
CfoI GCGC 4 cut(s) 263, 379, 462, 916
Cfr10I RCCGGY 2 cut(s) 493, 549
Cfr13I GGNCC 2 cut(s) 400, 968
Csp6I GTAC 3 cut(s) 15, 327, 436
CviAII CATG 1 cut(s) 543
CviQI GTAC 3 cut(s) 15, 327, 436
DdeI CTNAG 2 cut(s) 366, 482
DpnI GATC 7 cut(s) 23, 228, 290, 332, 557, 753, 882
DpnII GATC 7 cut(s) 21, 226, 288, 330, 555, 751, 880
DraIII CACNNNGTG 2 cut(s) 719, 889
Eco147I AGGCCT 2 cut(s) 93, 347
Eco31I GGTCTC 2 cut(s) 113, 991
Eco47I GGWCC 1 cut(s) 968
Eco57I CTGAAG 3 cut(s) 69, 455, 644
Eco88I CYCGRG 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 1031
EcoRII CCWGG 2 cut(s) 402, 724
Esp3I CGTCTC 1 cut(s) 814
FaeI CATG 1 cut(s) 546
FaiI YATR 5 cut(s) 39, 305, 544, 1037, 1089
FaqI GGGAC 1 cut(s) 542
FatI CATG 1 cut(s) 542
FauI CCCGC 3 cut(s) 147, 681, 690
FblI GTMKAC 1 cut(s) 99
FokI GGATG 2 cut(s) 104, 809
GlaI GCGC 4 cut(s) 262, 378, 461, 915
GsaI CCCAGC 3 cut(s) 569, 584, 605
GsuI CTGGAG 2 cut(s) 747, 830
HaeIII GGCC 3 cut(s) 93, 347, 402
HapII CCGG 6 cut(s) 494, 515, 550, 813, 886, 977
HhaI GCGC 4 cut(s) 263, 379, 462, 916
Hin1II CATG 1 cut(s) 546
Hin6I GCGC 4 cut(s) 261, 377, 460, 914
HinP1I GCGC 4 cut(s) 261, 377, 460, 914
HincII GTYRAC 3 cut(s) 100, 247, 735
HindII GTYRAC 3 cut(s) 100, 247, 735
HinfI GANTC 6 cut(s) 71, 84, 101, 126, 898, 940
HpaII CCGG 6 cut(s) 494, 515, 550, 813, 886, 977
HphI GGTGA 5 cut(s) 283, 688, 848, 875, 901
Hpy166II GTNNAC 5 cut(s) 100, 247, 438, 735, 1026
Hpy188I TCNGA 6 cut(s) 83, 214, 226, 474, 945, 994
Hpy188III TCNNGA 6 cut(s) 286, 320, 515, 749, 847, 1051
Hpy8I GTNNAC 5 cut(s) 100, 247, 438, 735, 1026
Hpy99I CGWCG 5 cut(s) 71, 101, 313, 509, 512
HpyAV CCTTC 3 cut(s) 358, 590, 619
HpyCH4III ACNGT 6 cut(s) 309, 326, 389, 700, 719, 739
HpyCH4IV ACGT 5 cut(s) 440, 510, 635, 710, 831
HpyCH4V TGCA 2 cut(s) 643, 769
HpyF10VI GCNNNNNNNGC 7 cut(s) 163, 267, 344, 607, 682, 775, 920
HpyF3I CTNAG 2 cut(s) 366, 482
HpySE526I ACGT 5 cut(s) 440, 510, 635, 710, 831
Hsp92II CATG 1 cut(s) 546
HspAI GCGC 4 cut(s) 261, 377, 460, 914
Kpn2I TCCGGA 1 cut(s) 514
KpnI GGTACC 1 cut(s) 18
KroI GCCGGC 1 cut(s) 493
KroNI GCCGGC 1 cut(s) 495
Kzo9I GATC 7 cut(s) 21, 226, 288, 330, 555, 751, 880
LmnI GCTCC 2 cut(s) 242, 979
Lsp1109I GCAGC 4 cut(s) 221, 370, 484, 729
LweI GCATC 1 cut(s) 775
MaeII ACGT 5 cut(s) 440, 510, 635, 710, 831
MaeIII GTNAC 2 cut(s) 711, 719
MalI GATC 7 cut(s) 23, 228, 290, 332, 557, 753, 882
MboI GATC 7 cut(s) 21, 226, 288, 330, 555, 751, 880
MboII GAAGA 3 cut(s) 62, 274, 1039
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 820
MluCI AATT 6 cut(s) 62, 158, 534, 1031, 1058, 1081
MlyI GAGTC 3 cut(s) 65, 93, 95
MmeI TCCRAC 4 cut(s) 237, 447, 583, 774
MroI TCCGGA 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 2 cut(s) 759, 783
MspA1I CMGCKG 2 cut(s) 234, 456
MspI CCGG 6 cut(s) 494, 515, 550, 813, 886, 977
MspR9I CCNGG 3 cut(s) 404, 726, 887
MvaI CCWGG 2 cut(s) 404, 726
MvnI CGCG 4 cut(s) 263, 379, 462, 916
MwoI GCNNNNNNNGC 7 cut(s) 163, 267, 344, 607, 682, 775, 920
NaeI GCCGGC 1 cut(s) 495
NciI CCSGG 1 cut(s) 887
NdeII GATC 7 cut(s) 21, 226, 288, 330, 555, 751, 880
NgoMIV GCCGGC 1 cut(s) 493
NlaIII CATG 1 cut(s) 546
NlaIV GGNNCC 2 cut(s) 16, 548
NmuCI GTSAC 2 cut(s) 711, 719
OliI CACNNNNGTG 1 cut(s) 759
PceI AGGCCT 2 cut(s) 93, 347
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 927
PdiI GCCGGC 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 3 cut(s) 126, 898, 940
Pfl23II CGTACG 1 cut(s) 326
PflFI GACNNNGTC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 565
Ple19I CGATCG 2 cut(s) 229, 333
PleI GAGTC 3 cut(s) 65, 92, 95
PpsI GAGTC 3 cut(s) 65, 92, 95
PshAI GACNNNNGTC 2 cut(s) 105, 368
PsiI TTATAA 1 cut(s) 1089
Psp1406I AACGTT 1 cut(s) 831
Psp6I CCWGG 2 cut(s) 402, 724
PspFI CCCAGC 3 cut(s) 565, 580, 601
PspGI CCWGG 2 cut(s) 402, 724
PspLI CGTACG 1 cut(s) 326
PspN4I GGNNCC 2 cut(s) 16, 548
PspPI GGNCC 2 cut(s) 400, 968
PsuI RGATCY 1 cut(s) 555
PsyI GACNNNGTC 1 cut(s) 251
PvuI CGATCG 2 cut(s) 229, 333
PvuII CAGCTG 1 cut(s) 456
RsaI GTAC 3 cut(s) 16, 328, 437
RsaNI GTAC 3 cut(s) 15, 327, 436
RseI CAYNNNNRTG 2 cut(s) 759, 783
SalI GTCGAC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 774
Sau3AI GATC 7 cut(s) 21, 226, 288, 330, 555, 751, 880
Sau96I GGNCC 2 cut(s) 400, 968
SchI GAGTC 3 cut(s) 65, 93, 95
ScrFI CCNGG 3 cut(s) 404, 726, 887
SduI GDGCHC 1 cut(s) 820
SfaNI GCATC 1 cut(s) 775
SfcI CTRYAG 1 cut(s) 1009
SinI GGWCC 1 cut(s) 968
SmiMI CAYNNNNRTG 2 cut(s) 759, 783
Sse9I AATT 6 cut(s) 62, 158, 534, 1031, 1058, 1081
SseBI AGGCCT 2 cut(s) 93, 347
SspI AATATT 1 cut(s) 150
StuI AGGCCT 2 cut(s) 93, 347
StyD4I CCNGG 3 cut(s) 402, 724, 885
TaaI ACNGT 6 cut(s) 309, 326, 389, 700, 719, 739
TaiI ACGT 5 cut(s) 443, 513, 638, 713, 834
TaqI TCGA 4 cut(s) 66, 99, 204, 321
TaqII GACCGA 1 cut(s) 57
TasI AATT 6 cut(s) 62, 158, 534, 1031, 1058, 1081
TatI WGTACW 1 cut(s) 435
TauI GCSGC 7 cut(s) 8, 234, 270, 338, 452, 503, 542
TfiI GAWTC 3 cut(s) 126, 898, 940
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 2 cut(s) 262, 724
TseFI GTSAC 2 cut(s) 711, 719
TseI GCWGC 4 cut(s) 234, 358, 497, 742
Tsp45I GTSAC 2 cut(s) 711, 719
TspDTI ATGAA 1 cut(s) 1024
TspGWI ACGGA 2 cut(s) 960, 1043
TspRI CASTG 2 cut(s) 262, 724
Tth111I GACNNNGTC 1 cut(s) 251
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 968
XapI RAATTY 1 cut(s) 1031
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.