Rh5DG051900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014354
Physical Location & Seq
Forward (+)
4427174 .. 4428708
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG051900.1

Sequence Viewer

Length: 945 bp
ATGGGGTGCTGTCTCAGCTCCTCCGCCACCGACAAGTCCTCAGCTCCCAATCAGCCCTCACATTTCCAGAGATCCGACGAGAGCAGAGCTCCGCCGCCGGTGGTGGACGAAGAGACCGTGAAGGAAGTGCTTTCAGTATCAGAGACACCGAGGCCGAAGCCAACCCAAGAACAAGAACCAGTGTTTCAAGATCAAATTCAAGAACAGAAGAGGACCCAAGAACCGGTGTTTGAAGTGAAACTGGATCGGGTTCAAGAACAGAAGAGGGTCGTCGACGTCCAAGAACTACTACCGGTCTTTGAGGCGGAGGAGAACTGGGAGAAGAGAATACCCATTTCCGGCGGCGGCGGCGACGGAGAGATCTCGGAGCAGGCGTCTGAGATTTGCAGCCTGCAGAGCGAGAGCTTCTCGGCGACGACGGTAACCAGAGACGAAGACGATGAGGTTCAACAGAGGGTAGTGAACAATAGCAACAGAGTGTCGCCGGTGAAATTACAGAAAAACCCCCGGGACGTCGCGTTTAGGCCGGGCCGGGTGGTGGGTAAGTCTCCGACGCGGAGGACGGACGCGTCGCCGGGTCGGAGGTACGGTCCGAATGGGAATGCAGTGGGGTCAGCGAGGGTGGTTCAACCGGGTCAGGGTGGTAGGCGGGTCGGGTCGAGGACGGAGTCGAACCGGCGTGACCCGGGTGAGAGCTCGGGTCGGAGGTCCAGATCGCCGGCGACGAGGATTGCGGAGAACGGTGGAGTTAATAGAGCAAATGTGGGTCGGAGCCCGTCCGCTAATAGGAGGTATCCGGGTCGGAGTCCGGTTGGTCCGGTTGAGAGTTCGAATAATTCGACCCGGAGAATATTTGAGGAGCCCAAAATGGAGGAGGGTAAATGGCCCGCAAATGAGTCCCTTGATAACCCACATGTTTCTTTGGAATGCTTCATTTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

34.67

Weight (kDa)

6.81

Isoelectric Point (pI)

79.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 568
AatII GACGTC 2 cut(s) 279, 516
AccI GTMKAC 1 cut(s) 273
AccII CGCG 3 cut(s) 518, 556, 569
AclWI GGATC 2 cut(s) 66, 252
AcsI RAATTY 1 cut(s) 195
AcyI GRCGYC 3 cut(s) 276, 374, 513
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 5 cut(s) 223, 338, 538, 638, 786
AflIII ACRYGT 2 cut(s) 567, 913
AgeI ACCGGT 2 cut(s) 223, 292
AgsI TTSAA 6 cut(s) 188, 200, 233, 254, 449, 629
AluBI AGCT 5 cut(s) 18, 44, 89, 405, 696
AluI AGCT 5 cut(s) 18, 44, 89, 405, 696
Alw21I GWGCWC 2 cut(s) 91, 698
Alw26I GTCTC 5 cut(s) 17, 107, 137, 423, 552
AlwI GGATC 2 cut(s) 66, 252
Ama87I CYCGRG 3 cut(s) 507, 685, 697
AoxI GGCC 4 cut(s) 152, 524, 529, 884
ApeKI GCWGC 1 cut(s) 387
ApoI RAATTY 1 cut(s) 195
AsiGI ACCGGT 2 cut(s) 223, 292
AspS9I GGNCC 6 cut(s) 213, 529, 590, 708, 815, 885
AsuHPI GGTGA 2 cut(s) 499, 701
AsuII TTCGAA 1 cut(s) 830
AvaI CYCGRG 3 cut(s) 507, 685, 697
AvaII GGWCC 4 cut(s) 213, 590, 708, 815
BanII GRGCYC 4 cut(s) 91, 698, 776, 864
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 2 cut(s) 91, 698
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 399
BciVI GTATCC 1 cut(s) 804
BcoDI GTCTC 5 cut(s) 17, 107, 137, 423, 552
BfmI CTRYAG 1 cut(s) 392
BfuI GTATCC 1 cut(s) 804
BglII AGATCT 1 cut(s) 360
BisI GCNGC 5 cut(s) 95, 343, 346, 349, 388
BlsI GCNGC 5 cut(s) 96, 344, 347, 350, 389
Bme18I GGWCC 4 cut(s) 213, 590, 708, 815
BmeT110I CYCGRG 3 cut(s) 507, 685, 697
BmgT120I GGNCC 6 cut(s) 213, 529, 590, 708, 815, 885
BmiI GGNNCC 3 cut(s) 215, 773, 861
BmrI ACTGGG 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 441
BplI GAGNNNNNCTC 4 cut(s) 73, 105, 392, 424
Bpu10I CCTNAGC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 830
BsaHI GRCGYC 3 cut(s) 276, 374, 513
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 149, 506, 507, 685
BsaWI WCCGGW 4 cut(s) 223, 292, 808, 817
BsaXI ACNNNNNCTCC 4 cut(s) 359, 389, 574, 604
Bsc4I CCNNNNNNNGG 5 cut(s) 223, 338, 538, 638, 786
Bse118I RCCGGY 6 cut(s) 97, 223, 292, 484, 675, 718
Bse1I ACTGG 3 cut(s) 179, 246, 320
BseDI CCNNGG 4 cut(s) 149, 506, 507, 685
BseLI CCNNNNNNNGG 5 cut(s) 223, 338, 538, 638, 786
BseMII CTCAG 3 cut(s) 28, 54, 369
BseNI ACTGG 3 cut(s) 179, 246, 320
BseRI GAGGAG 4 cut(s) 10, 323, 872, 887
BseXI GCAGC 1 cut(s) 399
Bsh1236I CGCG 3 cut(s) 518, 556, 569
BshFI GGCC 4 cut(s) 154, 526, 531, 886
BshTI ACCGGT 2 cut(s) 223, 292
BsiHKAI GWGCWC 2 cut(s) 91, 698
BsiHKCI CYCGRG 3 cut(s) 507, 685, 697
BslFI GGGAC 2 cut(s) 524, 883
BslI CCNNNNNNNGG 5 cut(s) 223, 338, 538, 638, 786
BsmAI GTCTC 5 cut(s) 17, 107, 137, 423, 552
BsmBI CGTCTC 1 cut(s) 423
BsmFI GGGAC 2 cut(s) 524, 883
BsmI GAATGC 2 cut(s) 607, 932
BsnI GGCC 4 cut(s) 154, 526, 531, 886
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 3 cut(s) 507, 685, 697
Bsp119I TTCGAA 1 cut(s) 830
Bsp1286I GDGCHC 4 cut(s) 91, 698, 776, 864
Bsp143I GATC 5 cut(s) 71, 190, 244, 360, 713
BspANI GGCC 4 cut(s) 154, 526, 531, 886
BspCNI CTCAG 3 cut(s) 27, 53, 370
BspFNI CGCG 3 cut(s) 518, 556, 569
BspLI GGNNCC 3 cut(s) 215, 773, 861
BspMAI CTGCAG 1 cut(s) 396
BspPI GGATC 2 cut(s) 66, 252
BspT104I TTCGAA 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 6 cut(s) 97, 223, 292, 484, 675, 718
BsrI ACTGG 3 cut(s) 179, 246, 320
BssAI RCCGGY 6 cut(s) 97, 223, 292, 484, 675, 718
BssECI CCNNGG 4 cut(s) 149, 506, 507, 685
BssMI GATC 5 cut(s) 71, 190, 244, 360, 713
BssNI GRCGYC 3 cut(s) 276, 374, 513
Bst4CI ACNGT 4 cut(s) 118, 421, 590, 743
Bst6I CTCTTC 4 cut(s) 105, 203, 257, 317
BstACI GRCGYC 3 cut(s) 276, 374, 513
BstBI TTCGAA 1 cut(s) 830
BstC8I GCNNGC 4 cut(s) 372, 392, 720, 888
BstDEI CTNAG 3 cut(s) 14, 40, 378
BstEII GGTNACC 1 cut(s) 421
BstFNI CGCG 3 cut(s) 518, 556, 569
BstKTI GATC 5 cut(s) 74, 193, 247, 363, 716
BstMAI GTCTC 5 cut(s) 17, 107, 137, 423, 552
BstMBI GATC 5 cut(s) 71, 190, 244, 360, 713
BstMWI GCNNNNNNNGC 3 cut(s) 15, 348, 396
BstNSI RCATGY 1 cut(s) 917
BstPI GGTNACC 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 392
BstUI CGCG 3 cut(s) 518, 556, 569
BstV1I GCAGC 1 cut(s) 399
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 2 cut(s) 71, 360
BstYI RGATCY 2 cut(s) 71, 360
BsuI GTATCC 1 cut(s) 804
BsuRI GGCC 4 cut(s) 154, 526, 531, 886
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 2 cut(s) 186, 612
Cac8I GCNNGC 4 cut(s) 372, 392, 720, 888
Cfr10I RCCGGY 6 cut(s) 97, 223, 292, 484, 675, 718
Cfr13I GGNCC 6 cut(s) 213, 529, 590, 708, 815, 885
Cfr9I CCCGGG 2 cut(s) 507, 685
CpoI CGGWCCG 1 cut(s) 590
CseI GACGC 4 cut(s) 363, 558, 562, 575
Csp6I GTAC 1 cut(s) 586
CspAI ACCGGT 2 cut(s) 223, 292
CspI CGGWCCG 1 cut(s) 590
CviAII CATG 1 cut(s) 914
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 3 cut(s) 14, 40, 378
DpnI GATC 5 cut(s) 73, 192, 246, 362, 715
DpnII GATC 5 cut(s) 71, 190, 244, 360, 713
DrdI GACNNNNNNGTC 1 cut(s) 568
DseDI GACNNNNNNGTC 1 cut(s) 568
Eam1104I CTCTTC 4 cut(s) 105, 203, 257, 317
EarI CTCTTC 4 cut(s) 105, 203, 257, 317
EciI GGCGGA 3 cut(s) 13, 81, 320
Ecl136II GAGCTC 2 cut(s) 89, 696
Eco24I GRGCYC 4 cut(s) 91, 698, 776, 864
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 4 cut(s) 213, 590, 708, 815
Eco53kI GAGCTC 2 cut(s) 89, 696
Eco88I CYCGRG 3 cut(s) 507, 685, 697
Eco91I GGTNACC 1 cut(s) 421
EcoICRI GAGCTC 2 cut(s) 89, 696
EcoO109I RGGNCCY 1 cut(s) 213
EcoO65I GGTNACC 1 cut(s) 421
EcoT38I GRGCYC 4 cut(s) 91, 698, 776, 864
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 1 cut(s) 917
FaiI YATR 2 cut(s) 915, 943
FaqI GGGAC 2 cut(s) 524, 883
FatI CATG 1 cut(s) 913
FauI CCCGC 2 cut(s) 642, 895
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 5 cut(s) 95, 343, 346, 349, 388
FriOI GRGCYC 4 cut(s) 91, 698, 776, 864
Fsp4HI GCNGC 5 cut(s) 95, 343, 346, 349, 388
GluI GCNGC 5 cut(s) 95, 343, 346, 349, 388
HaeIII GGCC 4 cut(s) 154, 526, 531, 886
HgaI GACGC 4 cut(s) 363, 558, 562, 575
Hin1I GRCGYC 3 cut(s) 276, 374, 513
Hin1II CATG 1 cut(s) 917
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 668, 805, 896
HphI GGTGA 2 cut(s) 499, 701
Hpy166II GTNNAC 3 cut(s) 106, 274, 463
Hpy188III TCNNGA 5 cut(s) 67, 188, 200, 254, 711
Hpy8I GTNNAC 3 cut(s) 106, 274, 463
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 4 cut(s) 118, 421, 590, 743
HpyCH4IV ACGT 2 cut(s) 276, 513
HpyCH4V TGCA 3 cut(s) 387, 394, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 348, 396
HpyF3I CTNAG 3 cut(s) 14, 40, 378
HpySE526I ACGT 2 cut(s) 276, 513
Hsp92I GRCGYC 3 cut(s) 276, 374, 513
Hsp92II CATG 1 cut(s) 917
KroI GCCGGC 1 cut(s) 718
KroNI GCCGGC 1 cut(s) 720
Kzo9I GATC 5 cut(s) 71, 190, 244, 360, 713
LmnI GCTCC 6 cut(s) 23, 49, 94, 367, 771, 859
Lsp1109I GCAGC 1 cut(s) 399
MaeII ACGT 2 cut(s) 276, 513
MaeIII GTNAC 2 cut(s) 421, 680
MalI GATC 5 cut(s) 73, 192, 246, 362, 715
MboI GATC 5 cut(s) 71, 190, 244, 360, 713
MboII GAAGA 5 cut(s) 122, 220, 274, 334, 446
MflI RGATCY 2 cut(s) 71, 360
MhlI GDGCHC 4 cut(s) 91, 698, 776, 864
MluCI AATT 3 cut(s) 195, 491, 835
MluI ACGCGT 1 cut(s) 567
MlyI GAGTC 3 cut(s) 677, 814, 905
MmeI TCCRAC 6 cut(s) 99, 560, 575, 683, 749, 782
MreI CGCCGGCG 1 cut(s) 718
MroNI GCCGGC 1 cut(s) 718
MseI TTAA 1 cut(s) 750
Mva1269I GAATGC 2 cut(s) 607, 932
MvnI CGCG 3 cut(s) 518, 556, 569
MwoI GCNNNNNNNGC 3 cut(s) 15, 348, 396
NaeI GCCGGC 1 cut(s) 720
NdeII GATC 5 cut(s) 71, 190, 244, 360, 713
NgoMIV GCCGGC 1 cut(s) 718
NlaIII CATG 1 cut(s) 917
NlaIV GGNNCC 3 cut(s) 215, 773, 861
NmeAIII GCCGAG 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 680
NspI RCATGY 1 cut(s) 917
NspV TTCGAA 1 cut(s) 830
PciI ACATGT 1 cut(s) 913
PcsI WCGNNNNNNNCGW 4 cut(s) 114, 371, 722, 836
PctI GAATGC 2 cut(s) 607, 932
PdiI GCCGGC 1 cut(s) 720
PflFI GACNNNGTC 1 cut(s) 667
PinAI ACCGGT 2 cut(s) 223, 292
PkrI GCNGC 5 cut(s) 96, 344, 347, 350, 389
PleI GAGTC 3 cut(s) 676, 813, 904
PpsI GAGTC 3 cut(s) 676, 813, 904
PpuMI RGGWCCY 1 cut(s) 213
PscI ACATGT 1 cut(s) 913
Psp124BI GAGCTC 2 cut(s) 91, 698
Psp5II RGGWCCY 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 421
PspN4I GGNNCC 3 cut(s) 215, 773, 861
PspPI GGNCC 6 cut(s) 213, 529, 590, 708, 815, 885
PspPPI RGGWCCY 1 cut(s) 213
PstI CTGCAG 1 cut(s) 396
PsuI RGATCY 2 cut(s) 71, 360
PsyI GACNNNGTC 1 cut(s) 667
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
Rsr2I CGGWCCG 1 cut(s) 590
RsrII CGGWCCG 1 cut(s) 590
SacI GAGCTC 2 cut(s) 91, 698
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 5 cut(s) 95, 343, 346, 349, 388
Sau3AI GATC 5 cut(s) 71, 190, 244, 360, 713
Sau96I GGNCC 6 cut(s) 213, 529, 590, 708, 815, 885
SchI GAGTC 3 cut(s) 677, 814, 905
SduI GDGCHC 4 cut(s) 91, 698, 776, 864
SfcI CTRYAG 1 cut(s) 392
SfuI TTCGAA 1 cut(s) 830
SgrAI CRCCGGYG 3 cut(s) 97, 484, 718
SgrDI CGTCGACG 1 cut(s) 272
SinI GGWCC 4 cut(s) 213, 590, 708, 815
SmaI CCCGGG 2 cut(s) 509, 687
Sse9I AATT 3 cut(s) 195, 491, 835
SspI AATATT 1 cut(s) 852
SstI GAGCTC 2 cut(s) 91, 698
TaaI ACNGT 4 cut(s) 118, 421, 590, 743
TaiI ACGT 2 cut(s) 279, 516
TaqI TCGA 5 cut(s) 273, 659, 671, 830, 839
TasI AATT 3 cut(s) 195, 491, 835
TauI GCSGC 4 cut(s) 97, 345, 348, 351
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TscAI CASTG 2 cut(s) 186, 612
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 1 cut(s) 387
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 1 cut(s) 922
TspGWI ACGGA 3 cut(s) 369, 578, 680
TspMI CCCGGG 2 cut(s) 507, 685
TspRI CASTG 2 cut(s) 186, 612
Tth111I GACNNNGTC 1 cut(s) 667
VpaK11BI GGWCC 4 cut(s) 213, 590, 708, 815
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 917
XmaI CCCGGG 2 cut(s) 507, 685
XmiI GTMKAC 1 cut(s) 273
ZraI GACGTC 2 cut(s) 277, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.