AT1G61170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014354
Physical Location & Seq
Forward (+)
22549523 .. 22550711
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61170.1

Sequence Viewer

Length: 756 bp
ATGGGTAATTGCTGCGTCAGCTCCGGTACCACCGATCGGGAAAACGAGAACGTTTCCGACAAGAACACAACCATTGTCGAAGAAGAGACAGTAGTCAAAGAAGTCTTGTCAGAGACAACCTTGTTCACTCCTTCCTCTAGTTTCCGCACTTCGACGTTCAAAGACCCGGTGAAGACCAAGATCCGAGAAGATGAGGAGAAAAAACCCGGTTTCTTGAAAATGGCTTCAGACCCGGTTTTGATCCGACCCGGTTCGGTTGATCCTGAAGAAGGCTCTGAGGTTTCGGAGATTTGTAGCTTGAGTTTGAGCGAGAGTGTGTCTTCAACGGTTGTGATGAATGGTTACGATGAGGAACATGTGATGATGAAACAGAGGAAATCTCAGAGATCTCCGGCGAAAACTCGGACCCAGGTCACCGGTAATAATTATCCGACCCGGAGAACTGATCAATCTCCACGTAAGAGAAACAATGGTACATGTAATGGAGCGAGATACGGGTCGGGTGTGAGAGACCCGGGTGAGAGATCCGGAAGAAGGTCAAGATCGCCGGCGACGAATAGATCGGTGATGGATTCGAATCAGAGTAGTCGGGTGGGTGGGGCAAAGACTAGGAAGAATAATCAGTCTCCGGGTCGGGTTAGACTAGATCCGGCTAAAAACGGGTTGGATCAGCAACAGCATCAGAATTACGGTTATACCACAGAGGAATTGTTAGAGAACCCGCTTGTTTCGTTAGAGTGTTTCATATTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.85

Weight (kDa)

8.56

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccIII TCCGGA 1 cut(s) 527
AciI CCGC 2 cut(s) 145, 722
AclI AACGTT 1 cut(s) 51
AclWI GGATC 6 cut(s) 175, 235, 254, 519, 641, 675
AcuI CTGAAG 2 cut(s) 210, 285
AfaI GTAC 2 cut(s) 28, 475
AfiI CCNNNNNNNGG 3 cut(s) 36, 269, 534
AflIII ACRYGT 2 cut(s) 355, 476
AgeI ACCGGT 1 cut(s) 416
AgsI TTSAA 3 cut(s) 160, 217, 324
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 2 cut(s) 21, 297
AluI AGCT 2 cut(s) 21, 297
Alw26I GTCTC 4 cut(s) 80, 107, 504, 630
AlwI GGATC 6 cut(s) 175, 235, 254, 519, 641, 675
Ama87I CYCGRG 1 cut(s) 514
Aor13HI TCCGGA 1 cut(s) 527
ApeKI GCWGC 1 cut(s) 12
AsiGI ACCGGT 1 cut(s) 416
Asp718I GGTACC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 405
AsuC2I CCSGG 8 cut(s) 167, 207, 233, 249, 436, 515, 516, 630
AsuHPI GGTGA 4 cut(s) 181, 406, 530, 577
AsuII TTCGAA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 1 cut(s) 405
BanI GGYRCC 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 179, 312
BccI CCATC 1 cut(s) 562
BciT130I CCWGG 1 cut(s) 410
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 8 cut(s) 167, 207, 233, 249, 436, 515, 516, 630
BcoDI GTCTC 4 cut(s) 80, 107, 504, 630
BfaI CTAG 3 cut(s) 138, 609, 644
BglII AGATCT 1 cut(s) 386
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 9 cut(s) 167, 207, 233, 249, 410, 436, 515, 516, 630
Bme18I GGWCC 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 2 cut(s) 28, 407
BmrFI CCNGG 9 cut(s) 167, 207, 233, 249, 410, 436, 515, 516, 630
BmsI GCATC 1 cut(s) 688
BoxI GACNNNNGTC 2 cut(s) 92, 410
BpiI GAAGAC 2 cut(s) 179, 312
BplI GAGNNNNNCTC 2 cut(s) 364, 396
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 319
BpuMI CCSGG 8 cut(s) 167, 207, 233, 249, 436, 515, 516, 630
BsaAI YACGTR 1 cut(s) 458
BsaBI GATNNNNATC 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 504
BsaJI CCNNGG 2 cut(s) 408, 514
BsaWI WCCGGW 3 cut(s) 23, 416, 527
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 269, 534
Bse118I RCCGGY 2 cut(s) 416, 547
Bse8I GATNNNNATC 1 cut(s) 576
BseAI TCCGGA 1 cut(s) 527
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 408, 514
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 3 cut(s) 36, 269, 534
BseMII CTCAG 2 cut(s) 267, 395
BseRI GAGGAG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 26
BshTI ACCGGT 1 cut(s) 416
BsiEI CGRYCG 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 514
BslI CCNNNNNNNGG 3 cut(s) 36, 269, 534
BsmAI GTCTC 4 cut(s) 80, 107, 504, 630
Bso31I GGTCTC 1 cut(s) 504
BsoBI CYCGRG 1 cut(s) 514
Bsp119I TTCGAA 1 cut(s) 575
Bsp13I TCCGGA 1 cut(s) 527
BspACI CCGC 2 cut(s) 145, 722
BspCNI CTCAG 2 cut(s) 268, 394
BspEI TCCGGA 1 cut(s) 527
BspLI GGNNCC 2 cut(s) 28, 407
BspPI GGATC 6 cut(s) 175, 235, 254, 519, 641, 675
BspT104I TTCGAA 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 504
BsrFI RCCGGY 2 cut(s) 416, 547
BssAI RCCGGY 2 cut(s) 416, 547
BssECI CCNNGG 2 cut(s) 408, 514
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 3 cut(s) 91, 328, 692
Bst6I CTCTTC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 2 cut(s) 276, 381
BstEII GGTNACC 1 cut(s) 412
BstENI CCTNNNNNAGG 1 cut(s) 267
BstMAI GTCTC 4 cut(s) 80, 107, 504, 630
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 2 cut(s) 359, 480
BstPAI GACNNNNGTC 2 cut(s) 92, 410
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 9 cut(s) 165, 205, 231, 247, 408, 434, 513, 514, 628
BstV2I GAAGAC 2 cut(s) 179, 312
BstX2I RGATCY 4 cut(s) 180, 386, 524, 646
BstYI RGATCY 4 cut(s) 180, 386, 524, 646
Cac8I GCNNGC 1 cut(s) 549
Cfr10I RCCGGY 2 cut(s) 416, 547
Cfr13I GGNCC 1 cut(s) 405
Cfr9I CCCGGG 1 cut(s) 514
CseI GACGC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 27, 474
CspAI ACCGGT 1 cut(s) 416
CviAII CATG 2 cut(s) 356, 477
CviJI RGCY 5 cut(s) 21, 224, 273, 297, 653
CviKI_1 RGCY 5 cut(s) 21, 224, 273, 297, 653
CviQI GTAC 2 cut(s) 27, 474
DdeI CTNAG 2 cut(s) 276, 381
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 405
Eco57I CTGAAG 2 cut(s) 210, 285
Eco88I CYCGRG 1 cut(s) 514
Eco91I GGTNACC 1 cut(s) 412
EcoNI CCTNNNNNAGG 1 cut(s) 267
EcoO65I GGTNACC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 408
FaeI CATG 2 cut(s) 359, 480
FaiI YATR 4 cut(s) 357, 478, 696, 746
FatI CATG 2 cut(s) 355, 476
FauI CCCGC 1 cut(s) 729
FbaI TGATCA 1 cut(s) 445
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 3 cut(s) 138, 609, 644
GluI GCNGC 1 cut(s) 13
HgaI GACGC 1 cut(s) 4
Hin1II CATG 2 cut(s) 359, 480
HinfI GANTC 2 cut(s) 572, 577
HphI GGTGA 4 cut(s) 181, 406, 530, 577
Hpy166II GTNNAC 1 cut(s) 126
Hpy188III TCNNGA 5 cut(s) 38, 214, 263, 528, 540
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 2 cut(s) 157, 556
HpyAV CCTTC 3 cut(s) 141, 263, 528
HpyCH4III ACNGT 3 cut(s) 91, 328, 692
HpyCH4IV ACGT 3 cut(s) 51, 155, 457
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 2 cut(s) 276, 381
HpySE526I ACGT 3 cut(s) 51, 155, 457
Hsp92II CATG 2 cut(s) 359, 480
Kpn2I TCCGGA 1 cut(s) 527
KpnI GGTACC 1 cut(s) 30
KroI GCCGGC 1 cut(s) 547
KroNI GCCGGC 1 cut(s) 549
Ksp22I TGATCA 1 cut(s) 445
LmnI GCTCC 2 cut(s) 26, 485
LweI GCATC 1 cut(s) 688
MaeI CTAG 3 cut(s) 138, 609, 644
MaeII ACGT 3 cut(s) 51, 155, 457
MaeIII GTNAC 2 cut(s) 341, 412
MboII GAAGA 8 cut(s) 92, 95, 184, 200, 278, 312, 543, 625
MflI RGATCY 4 cut(s) 180, 386, 524, 646
MluCI AATT 4 cut(s) 7, 424, 685, 707
MmeI TCCRAC 4 cut(s) 81, 268, 455, 645
MnlI CCTC 6 cut(s) 145, 187, 271, 343, 366, 697
MreI CGCCGGCG 1 cut(s) 547
MroI TCCGGA 1 cut(s) 527
MroNI GCCGGC 1 cut(s) 547
MspR9I CCNGG 9 cut(s) 167, 207, 233, 249, 410, 436, 515, 516, 630
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 18
NaeI GCCGGC 1 cut(s) 549
NciI CCSGG 8 cut(s) 167, 207, 233, 249, 436, 515, 516, 630
NgoMIV GCCGGC 1 cut(s) 547
NlaIII CATG 2 cut(s) 359, 480
NlaIV GGNNCC 2 cut(s) 28, 407
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 2 cut(s) 359, 480
NspV TTCGAA 1 cut(s) 575
PciI ACATGT 2 cut(s) 355, 476
PcsI WCGNNNNNNNCGW 1 cut(s) 551
PdiI GCCGGC 1 cut(s) 549
PfeI GAWTC 2 cut(s) 572, 577
PinAI ACCGGT 1 cut(s) 416
PkrI GCNGC 1 cut(s) 14
Ple19I CGATCG 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 458
PscI ACATGT 2 cut(s) 355, 476
PshAI GACNNNNGTC 2 cut(s) 92, 410
Psp1406I AACGTT 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 408
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 28, 407
PspPI GGNCC 1 cut(s) 405
PsuI RGATCY 4 cut(s) 180, 386, 524, 646
PvuI CGATCG 1 cut(s) 37
RsaI GTAC 2 cut(s) 28, 475
RsaNI GTAC 2 cut(s) 27, 474
SatI GCNGC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 405
ScrFI CCNGG 9 cut(s) 167, 207, 233, 249, 410, 436, 515, 516, 630
SetI ASST 9 cut(s) 23, 54, 122, 158, 282, 299, 414, 460, 539
SfaNI GCATC 1 cut(s) 688
SfuI TTCGAA 1 cut(s) 575
SgrAI CRCCGGYG 1 cut(s) 547
SinI GGWCC 1 cut(s) 405
SmaI CCCGGG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 4 cut(s) 7, 424, 685, 707
SsiI CCGC 2 cut(s) 145, 722
SspMI CTAG 3 cut(s) 138, 609, 644
StyD4I CCNGG 9 cut(s) 165, 205, 231, 247, 408, 434, 513, 514, 628
TaaI ACNGT 3 cut(s) 91, 328, 692
TaiI ACGT 3 cut(s) 54, 158, 460
TaqI TCGA 3 cut(s) 78, 152, 575
TasI AATT 4 cut(s) 7, 424, 685, 707
TfiI GAWTC 2 cut(s) 572, 577
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 3 cut(s) 350, 380, 733
TspMI CCCGGG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 405
XagI CCTNNNNNAGG 1 cut(s) 267
XceI RCATGY 2 cut(s) 359, 480
XmaI CCCGGG 1 cut(s) 514
XspI CTAG 3 cut(s) 138, 609, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.