Rh5AG055300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014354
Physical Location & Seq
Forward (+)
4804148 .. 4805684
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG055300.1

Sequence Viewer

Length: 936 bp
ATGGGGTGCTGTCTCAGCTCCTCCGCCACCGACAAGTCCTCAGCTCCCAATCAGCCCCCACATTTCCAGAGATCCGACGACAGCAGGGCTCCGCCGCCGGTGGTGGACGAAGAGACCGTGAAGGAAGTGCTTTCAGTTTCAGAGACACCGAGGCCGAAGCCAACCCAAGAACAACAAGAACCAGTGTTTCAAGAACAGAAGAGGACCCAAGAACCGGTGTTTGAAGTGAAACTGGATCGGGTTCAAGAACAGAAGAGGGTCGTCGACGTCCAAGAACTACTACCGGTCTTTGAGGCGGGGGAGAACTGGGAGAAGAGAATACCCATTTCCGCCGGCGGCGACGGAGAGATCTCGGAGCAGGCGTCGGAGATTTGCAGCCTGCAGAGCGAGAGCTTCTCGGCGACGACGGTAACCAGAGACGAGGACGATGAGGTTCAACAGAGGGTAGTCAACAACAGCAGCAACAGAGTGTCGCCGGTGAAATTACAGAAAAACCCTCGGGACGTCGGGTTTAGGCCGGGCCGGGTGGTGGGTAAGTCTCCGACGCGGAGGACGGACGCGTCGCCGGGTCGGAGGTACGGTCCGAATGGGAATGCAGTCGGGTCAGCGAGGGTGGTTCAACCGGGTCAGGGTGGTAGGCGGGTCGGGTCGAGGACGGAGTCGAACCGGCGTGACCCGGGTGAGAGCTCGGGTCGGAGGTCCAGATCGCCGGCGACGAGGATTGCGGAGAACGGTGGAGTTAATAGAGCAAATGTGGGTCGGAGCCCGTCCGCTAATAGGAGGTATCCGGGTCGGAGTCCGGTTGGTCCGGTTGAGAGTTCGAATAGTTCGACCCGGAGAATATTTGAGGAGCCCAAAATGGAGGAGGGTAAATGGCCCGCAAATGAGTCCCTTGATAACCCACATGTTTCTTTGGAATGCTTCATTTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

34.24

Weight (kDa)

8.35

Isoelectric Point (pI)

79.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 559
AatII GACGTC 2 cut(s) 270, 507
AccI GTMKAC 1 cut(s) 264
AccII CGCG 2 cut(s) 547, 560
AclWI GGATC 2 cut(s) 66, 243
AcyI GRCGYC 3 cut(s) 267, 362, 504
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 4 cut(s) 214, 529, 629, 777
AflIII ACRYGT 2 cut(s) 558, 904
AgeI ACCGGT 2 cut(s) 214, 283
AgsI TTSAA 5 cut(s) 191, 224, 245, 437, 620
AluBI AGCT 4 cut(s) 18, 44, 393, 687
AluI AGCT 4 cut(s) 18, 44, 393, 687
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 5 cut(s) 17, 107, 137, 411, 543
AlwI GGATC 2 cut(s) 66, 243
Ama87I CYCGRG 3 cut(s) 498, 676, 688
AoxI GGCC 4 cut(s) 152, 515, 520, 875
ApeKI GCWGC 2 cut(s) 375, 459
AsiGI ACCGGT 2 cut(s) 214, 283
AspS9I GGNCC 6 cut(s) 204, 520, 581, 699, 806, 876
AsuC2I CCSGG 8 cut(s) 519, 524, 567, 624, 677, 678, 789, 835
AsuHPI GGTGA 2 cut(s) 490, 692
AsuII TTCGAA 1 cut(s) 821
AvaI CYCGRG 3 cut(s) 498, 676, 688
AvaII GGWCC 4 cut(s) 204, 581, 699, 806
BanII GRGCYC 4 cut(s) 91, 689, 767, 855
Bbv12I GWGCWC 1 cut(s) 689
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 387, 471
BciVI GTATCC 1 cut(s) 795
BcnI CCSGG 8 cut(s) 519, 524, 567, 624, 677, 678, 789, 835
BcoDI GTCTC 5 cut(s) 17, 107, 137, 411, 543
BfmI CTRYAG 1 cut(s) 380
BfuI GTATCC 1 cut(s) 795
BglII AGATCT 1 cut(s) 348
BisI GCNGC 4 cut(s) 95, 337, 376, 460
BlsI GCNGC 4 cut(s) 96, 338, 377, 461
Bme1390I CCNGG 8 cut(s) 519, 524, 567, 624, 677, 678, 789, 835
Bme18I GGWCC 4 cut(s) 204, 581, 699, 806
BmeT110I CYCGRG 3 cut(s) 498, 676, 688
BmgT120I GGNCC 6 cut(s) 204, 520, 581, 699, 806, 876
BmiI GGNNCC 4 cut(s) 90, 206, 764, 852
BmrFI CCNGG 8 cut(s) 519, 524, 567, 624, 677, 678, 789, 835
BmrI ACTGGG 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 380, 412
Bpu10I CCTNAGC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 821
BpuMI CCSGG 8 cut(s) 519, 524, 567, 624, 677, 678, 789, 835
BsaHI GRCGYC 3 cut(s) 267, 362, 504
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 149, 497, 676
BsaWI WCCGGW 4 cut(s) 214, 283, 799, 808
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 565, 595
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 529, 629, 777
Bse118I RCCGGY 7 cut(s) 97, 214, 283, 332, 475, 666, 709
Bse1I ACTGG 3 cut(s) 182, 237, 311
BseDI CCNNGG 3 cut(s) 149, 497, 676
BseLI CCNNNNNNNGG 4 cut(s) 214, 529, 629, 777
BseMII CTCAG 2 cut(s) 28, 54
BseNI ACTGG 3 cut(s) 182, 237, 311
BseRI GAGGAG 3 cut(s) 10, 863, 878
BseXI GCAGC 2 cut(s) 387, 471
Bsh1236I CGCG 2 cut(s) 547, 560
BshFI GGCC 4 cut(s) 154, 517, 522, 877
BshTI ACCGGT 2 cut(s) 214, 283
BsiHKAI GWGCWC 1 cut(s) 689
BsiHKCI CYCGRG 3 cut(s) 498, 676, 688
BslFI GGGAC 2 cut(s) 515, 874
BslI CCNNNNNNNGG 4 cut(s) 214, 529, 629, 777
BsmAI GTCTC 5 cut(s) 17, 107, 137, 411, 543
BsmBI CGTCTC 1 cut(s) 411
BsmFI GGGAC 2 cut(s) 515, 874
BsmI GAATGC 2 cut(s) 598, 923
BsnI GGCC 4 cut(s) 154, 517, 522, 877
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 3 cut(s) 498, 676, 688
Bsp119I TTCGAA 1 cut(s) 821
Bsp1286I GDGCHC 4 cut(s) 91, 689, 767, 855
Bsp143I GATC 4 cut(s) 71, 235, 348, 704
BspANI GGCC 4 cut(s) 154, 517, 522, 877
BspCNI CTCAG 2 cut(s) 27, 53
BspFNI CGCG 2 cut(s) 547, 560
BspLI GGNNCC 4 cut(s) 90, 206, 764, 852
BspMAI CTGCAG 1 cut(s) 384
BspPI GGATC 2 cut(s) 66, 243
BspT104I TTCGAA 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 7 cut(s) 97, 214, 283, 332, 475, 666, 709
BsrI ACTGG 3 cut(s) 182, 237, 311
BssAI RCCGGY 7 cut(s) 97, 214, 283, 332, 475, 666, 709
BssECI CCNNGG 3 cut(s) 149, 497, 676
BssMI GATC 4 cut(s) 71, 235, 348, 704
BssNI GRCGYC 3 cut(s) 267, 362, 504
Bst4CI ACNGT 4 cut(s) 118, 409, 581, 734
Bst6I CTCTTC 4 cut(s) 105, 194, 248, 308
BstACI GRCGYC 3 cut(s) 267, 362, 504
BstBI TTCGAA 1 cut(s) 821
BstC8I GCNNGC 5 cut(s) 334, 360, 380, 711, 879
BstDEI CTNAG 2 cut(s) 14, 40
BstEII GGTNACC 1 cut(s) 409
BstFNI CGCG 2 cut(s) 547, 560
BstKTI GATC 4 cut(s) 74, 238, 351, 707
BstMAI GTCTC 5 cut(s) 17, 107, 137, 411, 543
BstMBI GATC 4 cut(s) 71, 235, 348, 704
BstMWI GCNNNNNNNGC 2 cut(s) 15, 384
BstNSI RCATGY 1 cut(s) 908
BstPI GGTNACC 1 cut(s) 409
BstSCI CCNGG 8 cut(s) 517, 522, 565, 622, 675, 676, 787, 833
BstSFI CTRYAG 1 cut(s) 380
BstUI CGCG 2 cut(s) 547, 560
BstV1I GCAGC 2 cut(s) 387, 471
BstX2I RGATCY 2 cut(s) 71, 348
BstYI RGATCY 2 cut(s) 71, 348
BsuI GTATCC 1 cut(s) 795
BsuRI GGCC 4 cut(s) 154, 517, 522, 877
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 5 cut(s) 334, 360, 380, 711, 879
Cfr10I RCCGGY 7 cut(s) 97, 214, 283, 332, 475, 666, 709
Cfr13I GGNCC 6 cut(s) 204, 520, 581, 699, 806, 876
Cfr9I CCCGGG 1 cut(s) 676
CpoI CGGWCCG 1 cut(s) 581
CseI GACGC 4 cut(s) 351, 549, 553, 566
Csp6I GTAC 1 cut(s) 577
CspAI ACCGGT 2 cut(s) 214, 283
CspI CGGWCCG 1 cut(s) 581
CviAII CATG 1 cut(s) 905
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 2 cut(s) 14, 40
DpnI GATC 4 cut(s) 73, 237, 350, 706
DpnII GATC 4 cut(s) 71, 235, 348, 704
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
Eam1104I CTCTTC 4 cut(s) 105, 194, 248, 308
EarI CTCTTC 4 cut(s) 105, 194, 248, 308
EciI GGCGGA 3 cut(s) 13, 81, 319
Ecl136II GAGCTC 1 cut(s) 687
Eco24I GRGCYC 4 cut(s) 91, 689, 767, 855
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 4 cut(s) 204, 581, 699, 806
Eco53kI GAGCTC 1 cut(s) 687
Eco88I CYCGRG 3 cut(s) 498, 676, 688
Eco91I GGTNACC 1 cut(s) 409
EcoICRI GAGCTC 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 204
EcoO65I GGTNACC 1 cut(s) 409
EcoT38I GRGCYC 4 cut(s) 91, 689, 767, 855
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 1 cut(s) 908
FaiI YATR 2 cut(s) 906, 934
FaqI GGGAC 2 cut(s) 515, 874
FatI CATG 1 cut(s) 904
FauI CCCGC 3 cut(s) 289, 633, 886
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 4 cut(s) 95, 337, 376, 460
FriOI GRGCYC 4 cut(s) 91, 689, 767, 855
Fsp4HI GCNGC 4 cut(s) 95, 337, 376, 460
GluI GCNGC 4 cut(s) 95, 337, 376, 460
HaeIII GGCC 4 cut(s) 154, 517, 522, 877
HgaI GACGC 4 cut(s) 351, 549, 553, 566
Hin1I GRCGYC 3 cut(s) 267, 362, 504
Hin1II CATG 1 cut(s) 908
HincII GTYRAC 2 cut(s) 265, 451
HindII GTYRAC 2 cut(s) 265, 451
HinfI GANTC 3 cut(s) 659, 796, 887
HphI GGTGA 2 cut(s) 490, 692
Hpy166II GTNNAC 3 cut(s) 106, 265, 451
Hpy188III TCNNGA 5 cut(s) 67, 191, 245, 500, 702
Hpy8I GTNNAC 3 cut(s) 106, 265, 451
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 4 cut(s) 118, 409, 581, 734
HpyCH4IV ACGT 2 cut(s) 267, 504
HpyCH4V TGCA 3 cut(s) 375, 382, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 384
HpyF3I CTNAG 2 cut(s) 14, 40
HpySE526I ACGT 2 cut(s) 267, 504
Hsp92I GRCGYC 3 cut(s) 267, 362, 504
Hsp92II CATG 1 cut(s) 908
KroI GCCGGC 2 cut(s) 332, 709
KroNI GCCGGC 2 cut(s) 334, 711
Kzo9I GATC 4 cut(s) 71, 235, 348, 704
LmnI GCTCC 6 cut(s) 23, 49, 94, 355, 762, 850
Lsp1109I GCAGC 2 cut(s) 387, 471
MaeII ACGT 2 cut(s) 267, 504
MaeIII GTNAC 2 cut(s) 409, 671
MalI GATC 4 cut(s) 73, 237, 350, 706
MboI GATC 4 cut(s) 71, 235, 348, 704
MboII GAAGA 4 cut(s) 122, 211, 265, 325
MflI RGATCY 2 cut(s) 71, 348
MhlI GDGCHC 4 cut(s) 91, 689, 767, 855
MluCI AATT 1 cut(s) 482
MluI ACGCGT 1 cut(s) 558
MlyI GAGTC 3 cut(s) 668, 805, 896
MmeI TCCRAC 7 cut(s) 99, 345, 551, 566, 674, 740, 773
MreI CGCCGGCG 2 cut(s) 332, 709
MroNI GCCGGC 2 cut(s) 332, 709
MseI TTAA 1 cut(s) 741
MspR9I CCNGG 8 cut(s) 519, 524, 567, 624, 677, 678, 789, 835
Mva1269I GAATGC 2 cut(s) 598, 923
MvnI CGCG 2 cut(s) 547, 560
MwoI GCNNNNNNNGC 2 cut(s) 15, 384
NaeI GCCGGC 2 cut(s) 334, 711
NciI CCSGG 8 cut(s) 519, 524, 567, 624, 677, 678, 789, 835
NdeII GATC 4 cut(s) 71, 235, 348, 704
NgoMIV GCCGGC 2 cut(s) 332, 709
NlaIII CATG 1 cut(s) 908
NlaIV GGNNCC 4 cut(s) 90, 206, 764, 852
NmeAIII GCCGAG 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 671
NspI RCATGY 1 cut(s) 908
NspV TTCGAA 1 cut(s) 821
PciI ACATGT 1 cut(s) 904
PcsI WCGNNNNNNNCGW 4 cut(s) 114, 359, 713, 827
PctI GAATGC 2 cut(s) 598, 923
PdiI GCCGGC 2 cut(s) 334, 711
PflFI GACNNNGTC 1 cut(s) 658
PinAI ACCGGT 2 cut(s) 214, 283
PkrI GCNGC 4 cut(s) 96, 338, 377, 461
PleI GAGTC 3 cut(s) 667, 804, 895
PpsI GAGTC 3 cut(s) 667, 804, 895
PpuMI RGGWCCY 1 cut(s) 204
PscI ACATGT 1 cut(s) 904
Psp124BI GAGCTC 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 204
PspEI GGTNACC 1 cut(s) 409
PspN4I GGNNCC 4 cut(s) 90, 206, 764, 852
PspPI GGNCC 6 cut(s) 204, 520, 581, 699, 806, 876
PspPPI RGGWCCY 1 cut(s) 204
PstI CTGCAG 1 cut(s) 384
PsuI RGATCY 2 cut(s) 71, 348
PsyI GACNNNGTC 1 cut(s) 658
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
Rsr2I CGGWCCG 1 cut(s) 581
RsrII CGGWCCG 1 cut(s) 581
SacI GAGCTC 1 cut(s) 689
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 4 cut(s) 95, 337, 376, 460
Sau3AI GATC 4 cut(s) 71, 235, 348, 704
Sau96I GGNCC 6 cut(s) 204, 520, 581, 699, 806, 876
SchI GAGTC 3 cut(s) 668, 805, 896
ScrFI CCNGG 8 cut(s) 519, 524, 567, 624, 677, 678, 789, 835
SduI GDGCHC 4 cut(s) 91, 689, 767, 855
SfcI CTRYAG 1 cut(s) 380
SfuI TTCGAA 1 cut(s) 821
SgrAI CRCCGGYG 4 cut(s) 97, 332, 475, 709
SgrDI CGTCGACG 1 cut(s) 263
SinI GGWCC 4 cut(s) 204, 581, 699, 806
SmaI CCCGGG 1 cut(s) 678
Sse9I AATT 1 cut(s) 482
SspI AATATT 1 cut(s) 843
SstI GAGCTC 1 cut(s) 689
StyD4I CCNGG 8 cut(s) 517, 522, 565, 622, 675, 676, 787, 833
TaaI ACNGT 4 cut(s) 118, 409, 581, 734
TaiI ACGT 2 cut(s) 270, 507
TaqI TCGA 5 cut(s) 264, 650, 662, 821, 830
TasI AATT 1 cut(s) 482
TauI GCSGC 2 cut(s) 97, 339
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 2 cut(s) 375, 459
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 1 cut(s) 913
TspGWI ACGGA 3 cut(s) 357, 569, 671
TspMI CCCGGG 1 cut(s) 676
TspRI CASTG 1 cut(s) 189
Tth111I GACNNNGTC 1 cut(s) 658
VpaK11BI GGWCC 4 cut(s) 204, 581, 699, 806
XceI RCATGY 1 cut(s) 908
XmaI CCCGGG 1 cut(s) 676
XmiI GTMKAC 1 cut(s) 264
ZraI GACGTC 2 cut(s) 268, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.