Rmu_co8198018.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8198018.1
OG0014354
Physical Location & Seq
Forward (+)
1 .. 689
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8198018.1_g000001.1.cds

Sequence Viewer

Length: 689 bp
agaagagggtcgtcgacgtccaagaactactaccggtctttgaggcgggggagaactgggagaagagaatacccatttccggcggcggcgacggagagatctcagagcaggcgtcggagatttgcagcctgcagagcgagagcttctcggctacgacggtaaccagagacgaagacgatgaggttcaacagagggtagtcaacaacagcagcagcaacagagtgtcgccggtgaaattacagaaaaaccctcgggacgtcgggtttaggccgggccgggtggtgggtaagtctccgacgcggaggacggacgcgtcgccggttcggaggtacggtccgaatgggaatgcagtcgggtcagcgagggtggttcaaccgggtcagggtggtaggcgggtcgggtcgaggacggagtcgaaccggcgtgacccgggtgagagctcgggtcggaggtccagatcgccggcgacgaggattgtggagaacggtggagttaatagagcaaatgtgggtcggagcccgtccgctaataggaggtatccgggtcggagtccggttggtccggttgagagttcgaatagttctacccggagaatatttgaggagcccaaaatggaggagggtaaatggcccgcaaatgagtcccttgataacccacatgtttctttggaatgcttcattttcttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.92

Weight (kDa)

9.9

Isoelectric Point (pI)

82.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 312
AatII GACGTC 2 cut(s) 20, 260
AccI GTMKAC 1 cut(s) 14
AccII CGCG 2 cut(s) 300, 313
AciI CCGC 7 cut(s) 46, 83, 86, 300, 393, 524, 632
AcyI GRCGYC 3 cut(s) 17, 112, 257
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 4 cut(s) 79, 282, 382, 530
AflIII ACRYGT 2 cut(s) 311, 657
AgeI ACCGGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 187, 373
AluBI AGCT 2 cut(s) 143, 440
AluI AGCT 2 cut(s) 143, 440
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 2 cut(s) 161, 296
Ama87I CYCGRG 3 cut(s) 251, 429, 441
AoxI GGCC 3 cut(s) 268, 273, 628
ApeKI GCWGC 3 cut(s) 125, 209, 212
AsiGI ACCGGT 1 cut(s) 33
AspS9I GGNCC 5 cut(s) 273, 334, 452, 559, 629
AsuC2I CCSGG 7 cut(s) 272, 277, 377, 430, 431, 542, 588
AsuHPI GGTGA 2 cut(s) 243, 445
AsuII TTCGAA 1 cut(s) 574
AvaI CYCGRG 3 cut(s) 251, 429, 441
AvaII GGWCC 3 cut(s) 334, 452, 559
BanII GRGCYC 3 cut(s) 442, 520, 608
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 3 cut(s) 137, 221, 224
BciVI GTATCC 1 cut(s) 548
BcnI CCSGG 7 cut(s) 272, 277, 377, 430, 431, 542, 588
BcoDI GTCTC 2 cut(s) 161, 296
BfmI CTRYAG 1 cut(s) 130
BfuI GTATCC 1 cut(s) 548
BglII AGATCT 1 cut(s) 98
BisI GCNGC 5 cut(s) 84, 87, 126, 210, 213
BlsI GCNGC 5 cut(s) 85, 88, 127, 211, 214
Bme1390I CCNGG 7 cut(s) 272, 277, 377, 430, 431, 542, 588
Bme18I GGWCC 3 cut(s) 334, 452, 559
BmeT110I CYCGRG 3 cut(s) 251, 429, 441
BmgT120I GGNCC 5 cut(s) 273, 334, 452, 559, 629
BmiI GGNNCC 2 cut(s) 517, 605
BmrFI CCNGG 7 cut(s) 272, 277, 377, 430, 431, 542, 588
BmrI ACTGGG 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 130, 162
Bpu14I TTCGAA 1 cut(s) 574
BpuMI CCSGG 7 cut(s) 272, 277, 377, 430, 431, 542, 588
BsaHI GRCGYC 3 cut(s) 17, 112, 257
BsaJI CCNNGG 2 cut(s) 250, 429
BsaWI WCCGGW 3 cut(s) 33, 552, 561
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 282, 382, 530
Bse118I RCCGGY 5 cut(s) 33, 228, 318, 419, 462
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 2 cut(s) 250, 429
BseLI CCNNNNNNNGG 4 cut(s) 79, 282, 382, 530
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 616, 631
BseXI GCAGC 3 cut(s) 137, 221, 224
Bsh1236I CGCG 2 cut(s) 300, 313
BshFI GGCC 3 cut(s) 270, 275, 630
BshTI ACCGGT 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 442
BsiHKCI CYCGRG 3 cut(s) 251, 429, 441
BslFI GGGAC 2 cut(s) 268, 627
BslI CCNNNNNNNGG 4 cut(s) 79, 282, 382, 530
BsmAI GTCTC 2 cut(s) 161, 296
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 268, 627
BsmI GAATGC 2 cut(s) 351, 676
BsnI GGCC 3 cut(s) 270, 275, 630
BsoBI CYCGRG 3 cut(s) 251, 429, 441
Bsp119I TTCGAA 1 cut(s) 574
Bsp1286I GDGCHC 3 cut(s) 442, 520, 608
Bsp143I GATC 2 cut(s) 98, 457
BspACI CCGC 7 cut(s) 46, 83, 86, 300, 393, 524, 632
BspANI GGCC 3 cut(s) 270, 275, 630
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 2 cut(s) 300, 313
BspLI GGNNCC 2 cut(s) 517, 605
BspMAI CTGCAG 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 574
BsrFI RCCGGY 5 cut(s) 33, 228, 318, 419, 462
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 5 cut(s) 33, 228, 318, 419, 462
BssECI CCNNGG 2 cut(s) 250, 429
BssMI GATC 2 cut(s) 98, 457
BssNI GRCGYC 3 cut(s) 17, 112, 257
Bst4CI ACNGT 3 cut(s) 159, 334, 487
Bst6I CTCTTC 1 cut(s) 58
BstACI GRCGYC 3 cut(s) 17, 112, 257
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 4 cut(s) 110, 130, 464, 632
BstDEI CTNAG 1 cut(s) 102
BstEII GGTNACC 1 cut(s) 159
BstFNI CGCG 2 cut(s) 300, 313
BstKTI GATC 2 cut(s) 101, 460
BstMAI GTCTC 2 cut(s) 161, 296
BstMBI GATC 2 cut(s) 98, 457
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 661
BstPI GGTNACC 1 cut(s) 159
BstSCI CCNGG 7 cut(s) 270, 275, 375, 428, 429, 540, 586
BstSFI CTRYAG 1 cut(s) 130
BstUI CGCG 2 cut(s) 300, 313
BstV1I GCAGC 3 cut(s) 137, 221, 224
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BsuI GTATCC 1 cut(s) 548
BsuRI GGCC 3 cut(s) 270, 275, 630
Cac8I GCNNGC 4 cut(s) 110, 130, 464, 632
Cfr10I RCCGGY 5 cut(s) 33, 228, 318, 419, 462
Cfr13I GGNCC 5 cut(s) 273, 334, 452, 559, 629
Cfr9I CCCGGG 1 cut(s) 429
CpoI CGGWCCG 1 cut(s) 334
CseI GACGC 4 cut(s) 101, 302, 306, 319
Csp6I GTAC 1 cut(s) 330
CspAI ACCGGT 1 cut(s) 33
CspI CGGWCCG 1 cut(s) 334
CviAII CATG 1 cut(s) 658
CviJI RGCY 9 cut(s) 128, 143, 151, 270, 275, 440, 518, 606, 630
CviKI_1 RGCY 9 cut(s) 128, 143, 151, 270, 275, 440, 518, 606, 630
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 100, 459
DpnII GATC 2 cut(s) 98, 457
DrdI GACNNNNNNGTC 1 cut(s) 312
DseDI GACNNNNNNGTC 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 440
Eco24I GRGCYC 3 cut(s) 442, 520, 608
Eco47I GGWCC 3 cut(s) 334, 452, 559
Eco53kI GAGCTC 1 cut(s) 440
Eco88I CYCGRG 3 cut(s) 251, 429, 441
Eco91I GGTNACC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 159
EcoT38I GRGCYC 3 cut(s) 442, 520, 608
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 1 cut(s) 661
FaiI YATR 2 cut(s) 659, 687
FaqI GGGAC 2 cut(s) 268, 627
FatI CATG 1 cut(s) 657
FauI CCCGC 3 cut(s) 39, 386, 639
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 5 cut(s) 84, 87, 126, 210, 213
FriOI GRGCYC 3 cut(s) 442, 520, 608
Fsp4HI GCNGC 5 cut(s) 84, 87, 126, 210, 213
GluI GCNGC 5 cut(s) 84, 87, 126, 210, 213
HaeIII GGCC 3 cut(s) 270, 275, 630
HgaI GACGC 4 cut(s) 101, 302, 306, 319
Hin1I GRCGYC 3 cut(s) 17, 112, 257
Hin1II CATG 1 cut(s) 661
HincII GTYRAC 2 cut(s) 15, 201
HindII GTYRAC 2 cut(s) 15, 201
HinfI GANTC 3 cut(s) 412, 549, 640
HphI GGTGA 2 cut(s) 243, 445
Hpy166II GTNNAC 2 cut(s) 15, 201
Hpy188I TCNGA 8 cut(s) 105, 117, 296, 326, 338, 449, 515, 548
Hpy188III TCNNGA 2 cut(s) 253, 455
Hpy8I GTNNAC 2 cut(s) 15, 201
Hpy99I CGWCG 9 cut(s) 16, 19, 94, 117, 159, 262, 300, 318, 471
HpyCH4III ACNGT 3 cut(s) 159, 334, 487
HpyCH4IV ACGT 2 cut(s) 17, 257
HpyCH4V TGCA 3 cut(s) 125, 132, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 17, 257
Hsp92I GRCGYC 3 cut(s) 17, 112, 257
Hsp92II CATG 1 cut(s) 661
KroI GCCGGC 1 cut(s) 462
KroNI GCCGGC 1 cut(s) 464
Kzo9I GATC 2 cut(s) 98, 457
LmnI GCTCC 2 cut(s) 515, 603
Lsp1109I GCAGC 3 cut(s) 137, 221, 224
MaeII ACGT 2 cut(s) 17, 257
MaeIII GTNAC 2 cut(s) 159, 424
MalI GATC 2 cut(s) 100, 459
MboI GATC 2 cut(s) 98, 457
MboII GAAGA 3 cut(s) 15, 75, 184
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 3 cut(s) 442, 520, 608
MluCI AATT 1 cut(s) 235
MluI ACGCGT 1 cut(s) 311
MlyI GAGTC 3 cut(s) 421, 558, 649
MmeI TCCRAC 5 cut(s) 95, 319, 427, 493, 526
MreI CGCCGGCG 1 cut(s) 462
MroNI GCCGGC 1 cut(s) 462
MseI TTAA 1 cut(s) 494
MspR9I CCNGG 7 cut(s) 272, 277, 377, 430, 431, 542, 588
Mva1269I GAATGC 2 cut(s) 351, 676
MvnI CGCG 2 cut(s) 300, 313
MwoI GCNNNNNNNGC 1 cut(s) 134
NaeI GCCGGC 1 cut(s) 464
NciI CCSGG 7 cut(s) 272, 277, 377, 430, 431, 542, 588
NdeII GATC 2 cut(s) 98, 457
NgoMIV GCCGGC 1 cut(s) 462
NlaIII CATG 1 cut(s) 661
NlaIV GGNNCC 2 cut(s) 517, 605
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 424
NspI RCATGY 1 cut(s) 661
NspV TTCGAA 1 cut(s) 574
PciI ACATGT 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 466
PctI GAATGC 2 cut(s) 351, 676
PdiI GCCGGC 1 cut(s) 464
PflFI GACNNNGTC 1 cut(s) 411
PinAI ACCGGT 1 cut(s) 33
PkrI GCNGC 5 cut(s) 85, 88, 127, 211, 214
PleI GAGTC 3 cut(s) 420, 557, 648
PpsI GAGTC 3 cut(s) 420, 557, 648
PscI ACATGT 1 cut(s) 657
Psp124BI GAGCTC 1 cut(s) 442
PspEI GGTNACC 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 517, 605
PspPI GGNCC 5 cut(s) 273, 334, 452, 559, 629
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 411
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
Rsr2I CGGWCCG 1 cut(s) 334
RsrII CGGWCCG 1 cut(s) 334
SacI GAGCTC 1 cut(s) 442
SalI GTCGAC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 5 cut(s) 84, 87, 126, 210, 213
Sau3AI GATC 2 cut(s) 98, 457
Sau96I GGNCC 5 cut(s) 273, 334, 452, 559, 629
SchI GAGTC 3 cut(s) 421, 558, 649
ScrFI CCNGG 7 cut(s) 272, 277, 377, 430, 431, 542, 588
SduI GDGCHC 3 cut(s) 442, 520, 608
SetI ASST 8 cut(s) 20, 145, 185, 260, 331, 442, 454, 538
SfcI CTRYAG 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 574
SgrAI CRCCGGYG 2 cut(s) 228, 462
SgrDI CGTCGACG 1 cut(s) 13
SinI GGWCC 3 cut(s) 334, 452, 559
SmaI CCCGGG 1 cut(s) 431
Sse9I AATT 1 cut(s) 235
SsiI CCGC 7 cut(s) 46, 83, 86, 300, 393, 524, 632
SspI AATATT 1 cut(s) 596
SstI GAGCTC 1 cut(s) 442
StyD4I CCNGG 7 cut(s) 270, 275, 375, 428, 429, 540, 586
TaaI ACNGT 3 cut(s) 159, 334, 487
TaiI ACGT 2 cut(s) 20, 260
TaqI TCGA 4 cut(s) 14, 403, 415, 574
TasI AATT 1 cut(s) 235
TauI GCSGC 2 cut(s) 86, 89
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 3 cut(s) 125, 209, 212
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 666
TspGWI ACGGA 3 cut(s) 107, 322, 424
TspMI CCCGGG 1 cut(s) 429
Tth111I GACNNNGTC 1 cut(s) 411
VpaK11BI GGWCC 3 cut(s) 334, 452, 559
XceI RCATGY 1 cut(s) 661
XmaI CCCGGG 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 14
ZraI GACGTC 2 cut(s) 18, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.