Prupe.4G040000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014354
Physical Location & Seq
Forward (+)
1884472 .. 1886189
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G040000.1

Sequence Viewer

Length: 948 bp
ATGGGTTGCTGTATGAGCACCACTACCACTGAAAAGTCCTCAGCTTTAGGTCCTCAAAAGCTGCAGCATTCTTTGGTGGGCACTCAAGGACCAAGATCTGATGATGCCCATGACAGCAGAGCACCACCTCCAGTAGATGAAGAGACTGTGAAAGAAGTGCTTTCTGAGACTCCAAGGCCCAAACCAACACCATCTTCACCACCACCACCACTCATGCCTTTCACAAAGCTCCAAGAACACGGGCCAGAAGATCAAGATCAAGAAAAGAGAGCCCAAGAACCAGTCTTTGAGAAGAAAATCAAGCAAGAAGACCCAGAAAAGGTTGAGGAGAAAATACCCATTTACAACAACAATGGAGAGATCTCAGAGGTATCGGAGATTTGCAGCTTGAGTGAGAGCATGTCCACCACCACCATTACCAGAGACGACGATGAAGAGGTCCATCAAAGGGTCAACAGGTCTCCGATGAGAATACCAAAGAACCGGGACCCAATAGGCCAGAGGAGAGACCGGGTCGTGGGTAAGTCTCCGACCCGGAGAACCGAGTCATCGCCGGGTCGGAAATATGGGCCAAATGGTAATAATGGCGCTGGGTCAGTGAGATTGGTTCAGAGCAGAGAGCCGGGTCCCGGTCAACAGCCACTGTCCCGGCGTGGGTCGAGGGCCGAGTCGAACCGGCGTGACCCCGGTGAGAGTTCGGGGCGGAGGTCCAGGTCACCGGCTACAAGGGTTACGGATGGTGGCGGGGCTAATAGAGCGAATGTGGGTCGGAGCCCGTCTGCCAGGAGATCCGGGAGGTATCCGGGTCGGACAGCGGTGGGTCAAGTTGAGAGTTCGGGTTCAACCCGAAGAGTTGCTGAGGAGCCTGTGATGGGGGAGGGTAAGTGGCCCGCCAATGAGTCTATTGACAACCCGCTTGTTTCTTTGGAATGCTTTATTTTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

34.49

Weight (kDa)

8.88

Isoelectric Point (pI)

79.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 703, 744, 815, 891, 914
AclWI GGATC 1 cut(s) 783
AfiI CCNNNNNNNGG 6 cut(s) 319, 448, 517, 629, 654, 872
AgsI TTSAA 1 cut(s) 843
AjnI CCWGG 2 cut(s) 710, 782
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 4 cut(s) 44, 61, 229, 387
AluI AGCT 4 cut(s) 44, 61, 229, 387
Alw21I GWGCWC 2 cut(s) 20, 124
Alw26I GTCTC 6 cut(s) 137, 161, 417, 465, 501, 531
AlwI GGATC 1 cut(s) 783
AlwNI CAGNNNCTG 1 cut(s) 643
AoxI GGCC 6 cut(s) 176, 242, 496, 569, 663, 887
ApeKI GCWGC 3 cut(s) 61, 64, 384
AspLEI GCGC 1 cut(s) 590
AsuHPI GGTGA 3 cut(s) 189, 701, 708
AvaII GGWCC 6 cut(s) 50, 89, 439, 487, 626, 708
BaeGI GKGCMC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 274, 776
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 20, 124
BbvCI CCTCAGC 2 cut(s) 40, 858
BbvI GCAGC 3 cut(s) 48, 76, 396
BccI CCATC 4 cut(s) 199, 450, 731, 865
BciT130I CCWGG 2 cut(s) 712, 784
BciVI GTATCC 1 cut(s) 810
BcoDI GTCTC 6 cut(s) 137, 161, 417, 465, 501, 531
BfmI CTRYAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 591
BfuI GTATCC 1 cut(s) 810
BglII AGATCT 2 cut(s) 95, 360
BisI GCNGC 3 cut(s) 62, 65, 385
BlsI GCNGC 3 cut(s) 63, 66, 386
Bme18I GGWCC 6 cut(s) 50, 89, 439, 487, 626, 708
BmiI GGNNCC 6 cut(s) 488, 489, 627, 628, 773, 864
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 114
Bpu10I CCTNAGC 2 cut(s) 40, 858
BpuEI CTTGAG 2 cut(s) 69, 409
BsaBI GATNNNNATC 1 cut(s) 255
BsaI GGTCTC 2 cut(s) 465, 501
BsaJI CCNNGG 2 cut(s) 173, 685
BsaXI ACNNNNNCTCC 2 cut(s) 869, 899
Bsc4I CCNNNNNNNGG 6 cut(s) 319, 448, 517, 629, 654, 872
Bse118I RCCGGY 2 cut(s) 675, 718
Bse1I ACTGG 2 cut(s) 131, 281
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 2 cut(s) 712, 784
BseDI CCNNGG 2 cut(s) 173, 685
BseGI GGATG 1 cut(s) 742
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 6 cut(s) 319, 448, 517, 629, 654, 872
BseMII CTCAG 4 cut(s) 54, 156, 378, 849
BseNI ACTGG 2 cut(s) 131, 281
BseRI GAGGAG 3 cut(s) 341, 517, 875
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 3 cut(s) 48, 76, 396
BseYI CCCAGC 1 cut(s) 590
BshFI GGCC 6 cut(s) 178, 244, 498, 571, 665, 889
BsiHKAI GWGCWC 2 cut(s) 20, 124
BslFI GGGAC 3 cut(s) 500, 612, 631
BslI CCNNNNNNNGG 6 cut(s) 319, 448, 517, 629, 654, 872
BsmAI GTCTC 6 cut(s) 137, 161, 417, 465, 501, 531
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 3 cut(s) 500, 612, 631
BsmI GAATGC 2 cut(s) 67, 935
BsnI GGCC 6 cut(s) 178, 244, 498, 571, 665, 889
Bso31I GGTCTC 2 cut(s) 465, 501
Bsp1286I GDGCHC 5 cut(s) 20, 83, 124, 274, 776
Bsp143I GATC 5 cut(s) 95, 250, 256, 360, 788
BspACI CCGC 5 cut(s) 703, 744, 815, 891, 914
BspANI GGCC 6 cut(s) 178, 244, 498, 571, 665, 889
BspCNI CTCAG 4 cut(s) 53, 157, 377, 850
BspLI GGNNCC 6 cut(s) 488, 489, 627, 628, 773, 864
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 783
BspTNI GGTCTC 2 cut(s) 465, 501
BsrFI RCCGGY 2 cut(s) 675, 718
BsrI ACTGG 2 cut(s) 131, 281
BssAI RCCGGY 2 cut(s) 675, 718
BssECI CCNNGG 2 cut(s) 173, 685
BssMI GATC 5 cut(s) 95, 250, 256, 360, 788
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 2 cut(s) 712, 784
Bst4CI ACNGT 2 cut(s) 148, 645
Bst6I CTCTTC 3 cut(s) 135, 429, 844
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 4 cut(s) 40, 165, 364, 858
BstEII GGTNACC 1 cut(s) 714
BstF5I GGATG 1 cut(s) 742
BstH2I RGCGCY 1 cut(s) 591
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 5 cut(s) 98, 253, 259, 363, 791
BstMAI GTCTC 6 cut(s) 137, 161, 417, 465, 501, 531
BstMBI GATC 5 cut(s) 95, 250, 256, 360, 788
BstMWI GCNNNNNNNGC 2 cut(s) 15, 755
BstNI CCWGG 2 cut(s) 712, 784
BstNSI RCATGY 1 cut(s) 403
BstPI GGTNACC 1 cut(s) 714
BstSFI CTRYAG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 3 cut(s) 48, 76, 396
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 3 cut(s) 95, 360, 788
BstYI RGATCY 3 cut(s) 95, 360, 788
BsuI GTATCC 1 cut(s) 810
BsuRI GGCC 6 cut(s) 178, 244, 498, 571, 665, 889
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 1 cut(s) 742
BtsIMutI CAGTG 3 cut(s) 27, 603, 641
Cac8I GCNNGC 1 cut(s) 891
CaiI CAGNNNCTG 1 cut(s) 643
CfoI GCGC 1 cut(s) 590
Cfr10I RCCGGY 2 cut(s) 675, 718
CviAII CATG 3 cut(s) 110, 214, 400
DdeI CTNAG 4 cut(s) 40, 165, 364, 858
DpnI GATC 5 cut(s) 97, 252, 258, 362, 790
DpnII GATC 5 cut(s) 95, 250, 256, 360, 788
Eam1104I CTCTTC 3 cut(s) 135, 429, 844
EarI CTCTTC 3 cut(s) 135, 429, 844
EciI GGCGGA 1 cut(s) 718
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 2 cut(s) 274, 776
Eco31I GGTCTC 2 cut(s) 465, 501
Eco47I GGWCC 6 cut(s) 50, 89, 439, 487, 626, 708
Eco91I GGTNACC 1 cut(s) 714
EcoO109I RGGNCCY 3 cut(s) 50, 487, 626
EcoO65I GGTNACC 1 cut(s) 714
EcoRII CCWGG 2 cut(s) 710, 782
EcoT14I CCWWGG 1 cut(s) 173
EcoT38I GRGCYC 2 cut(s) 274, 776
ErhI CCWWGG 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 3 cut(s) 113, 217, 403
FaiI YATR 6 cut(s) 14, 111, 215, 401, 567, 946
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 3 cut(s) 500, 612, 631
FatI CATG 3 cut(s) 109, 213, 399
FauI CCCGC 3 cut(s) 737, 898, 921
Fnu4HI GCNGC 3 cut(s) 62, 65, 385
FokI GGATG 1 cut(s) 749
FriOI GRGCYC 2 cut(s) 274, 776
Fsp4HI GCNGC 3 cut(s) 62, 65, 385
GlaI GCGC 1 cut(s) 589
GluI GCNGC 3 cut(s) 62, 65, 385
GsaI CCCAGC 1 cut(s) 594
GsuI CTGGAG 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 591
HaeIII GGCC 6 cut(s) 178, 244, 498, 571, 665, 889
HhaI GCGC 1 cut(s) 590
Hin1II CATG 3 cut(s) 113, 217, 403
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HincII GTYRAC 2 cut(s) 454, 635
HindII GTYRAC 2 cut(s) 454, 635
HinfI GANTC 4 cut(s) 169, 545, 668, 899
HphI GGTGA 3 cut(s) 189, 701, 708
Hpy166II GTNNAC 3 cut(s) 405, 454, 635
Hpy188III TCNNGA 2 cut(s) 254, 260
Hpy8I GTNNAC 3 cut(s) 405, 454, 635
Hpy99I CGWCG 1 cut(s) 431
HpyCH4III ACNGT 2 cut(s) 148, 645
HpyCH4V TGCA 2 cut(s) 64, 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 755
HpyF3I CTNAG 4 cut(s) 40, 165, 364, 858
Hsp92II CATG 3 cut(s) 113, 217, 403
HspAI GCGC 1 cut(s) 588
KflI GGGWCCC 2 cut(s) 487, 626
Kzo9I GATC 5 cut(s) 95, 250, 256, 360, 788
LmnI GCTCC 3 cut(s) 234, 771, 862
Lsp1109I GCAGC 3 cut(s) 48, 76, 396
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 3 cut(s) 680, 714, 730
MalI GATC 5 cut(s) 97, 252, 258, 362, 790
MboI GATC 5 cut(s) 95, 250, 256, 360, 788
MboII GAAGA 7 cut(s) 152, 186, 260, 304, 320, 446, 861
MflI RGATCY 3 cut(s) 95, 360, 788
MhlI GDGCHC 5 cut(s) 20, 83, 124, 274, 776
MlyI GAGTC 4 cut(s) 163, 554, 677, 908
MmeI TCCRAC 4 cut(s) 539, 554, 749, 788
MspA1I CMGCKG 1 cut(s) 815
Mva1269I GAATGC 2 cut(s) 67, 935
MvaI CCWGG 2 cut(s) 712, 784
MwoI GCNNNNNNNGC 2 cut(s) 15, 755
NdeII GATC 5 cut(s) 95, 250, 256, 360, 788
NlaIII CATG 3 cut(s) 113, 217, 403
NlaIV GGNNCC 6 cut(s) 488, 489, 627, 628, 773, 864
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 2 cut(s) 680, 714
NspI RCATGY 1 cut(s) 403
PctI GAATGC 2 cut(s) 67, 935
PflFI GACNNNGTC 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 791
PkrI GCNGC 3 cut(s) 63, 66, 386
PleI GAGTC 4 cut(s) 163, 553, 676, 907
PpsI GAGTC 4 cut(s) 163, 553, 676, 907
PpuMI RGGWCCY 3 cut(s) 50, 487, 626
Psp5II RGGWCCY 3 cut(s) 50, 487, 626
Psp6I CCWGG 2 cut(s) 710, 782
PspEI GGTNACC 1 cut(s) 714
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 2 cut(s) 710, 782
PspN4I GGNNCC 6 cut(s) 488, 489, 627, 628, 773, 864
PspPPI RGGWCCY 3 cut(s) 50, 487, 626
PstI CTGCAG 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 643
PsuI RGATCY 3 cut(s) 95, 360, 788
PsyI GACNNNGTC 1 cut(s) 512
SatI GCNGC 3 cut(s) 62, 65, 385
Sau3AI GATC 5 cut(s) 95, 250, 256, 360, 788
SchI GAGTC 4 cut(s) 163, 554, 677, 908
SduI GDGCHC 5 cut(s) 20, 83, 124, 274, 776
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 6 cut(s) 50, 89, 439, 487, 626, 708
SmlI CTYRAG 2 cut(s) 84, 388
SmoI CTYRAG 2 cut(s) 84, 388
SsiI CCGC 5 cut(s) 703, 744, 815, 891, 914
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 2 cut(s) 148, 645
TaqI TCGA 2 cut(s) 659, 671
TscAI CASTG 3 cut(s) 34, 603, 648
TseFI GTSAC 2 cut(s) 680, 714
TseI GCWGC 3 cut(s) 61, 64, 384
Tsp45I GTSAC 2 cut(s) 680, 714
TspDTI ATGAA 2 cut(s) 153, 447
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 3 cut(s) 34, 603, 648
Tth111I GACNNNGTC 1 cut(s) 512
VpaK11BI GGWCC 6 cut(s) 50, 89, 439, 487, 626, 708
XceI RCATGY 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.