Rroxscaffold_1G00069030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014354
Physical Location & Seq
Reverse (-)
90055148 .. 90056086
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069030.1

Sequence Viewer

Length: 939 bp
ATGGGGTGCTGTCTCAGCTCCTCCGCCGCCGACAAGTCCTCAGCTCCCAATCAGCCCCCACATTCCCAGAGATCCGACGAGAGCAGGGCTCCGCCGCCGGTGGTGGACGAAGAGACCGTGAAGGAAGTGCTTTCAGTTTCAGAGACACCGAGGCCGAAGCCAACCCAAGAACAAGAACCAGTGTTTCAAGATCAAATTCAAGAACAGAAGAGGACCCAAGAACCGGTGTTTGAAGTGAAACTGGATCAGGTTCAAGAACAGAAGAGGGTCGTCGACGTCCAAGAACTACTACCGGTCTTTGAGGCGGAGGAGAACTGGGAGAAGAGAATACCCATTTCCGGCGGCGGAGAGATCTCGGAGGCGGCGTCGGAGATATGCAGCCTGCAGAGCGAGAGCTTCTCGGCGACGACGGCGGCGACCAGAGACGAAGACGATGAGGTTCAACAGAGGGTAGTGAACAGCAGCAACAGAGTGTCGCCGGTGAAATTACAGAAAAACCCCCGGGACGTCGGGTTTAGGCCGGGCCGGGTGGTGGGTAAGTCTCCGACGCGGAGGACGGACGCGTCGCCGGGTCGGAGGTACGGTCCGAATGGGAATGCAGCCGGGTCAGCGAGGGTGGTTCAACCGGGTCAGGGTAGTAGGCGGGTCGGATCGAGGACTGAGTCGAACCGGCGTGACCCGGGTGAGAGTTCGGGCCGGAGGTCCAGGTCGCCGGCGACGAGGATTACGGAGAACGGTGGAGTTAATAGAGCAAATGTGGGTCGGAGCCCGTCTGCTAATAGGAGGTTTCCGGGTCGGAGTCCGGTTGGTTCGGTTGAGAGTTCGAATAGTTCGACCCGGAGAATATTTGAGGAGCCCAAAATGGAGGAGGGTAAATGGCCCGCAAATGAGTCCCTTGACAACCCACATGTTTCTTTGGAATGCTTCATTTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

34.26

Weight (kDa)

6.81

Isoelectric Point (pI)

82.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 562
AatII GACGTC 2 cut(s) 279, 510
AccI GTMKAC 1 cut(s) 273
AccII CGCG 2 cut(s) 550, 563
AclWI GGATC 3 cut(s) 66, 252, 658
AcsI RAATTY 1 cut(s) 195
AcyI GRCGYC 3 cut(s) 276, 365, 507
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 4 cut(s) 223, 338, 532, 632
AflIII ACRYGT 2 cut(s) 561, 907
AgeI ACCGGT 2 cut(s) 223, 292
AgsI TTSAA 6 cut(s) 188, 200, 233, 254, 443, 623
AjnI CCWGG 1 cut(s) 704
AluBI AGCT 3 cut(s) 18, 44, 396
AluI AGCT 3 cut(s) 18, 44, 396
Alw26I GTCTC 5 cut(s) 17, 107, 137, 417, 546
AlwI GGATC 3 cut(s) 66, 252, 658
Ama87I CYCGRG 2 cut(s) 501, 679
AoxI GGCC 5 cut(s) 152, 518, 523, 694, 878
ApeKI GCWGC 3 cut(s) 378, 462, 599
ApoI RAATTY 1 cut(s) 195
AsiGI ACCGGT 2 cut(s) 223, 292
AspS9I GGNCC 6 cut(s) 213, 523, 584, 694, 702, 879
AsuHPI GGTGA 2 cut(s) 493, 695
AsuII TTCGAA 1 cut(s) 824
AvaI CYCGRG 2 cut(s) 501, 679
AvaII GGWCC 3 cut(s) 213, 584, 702
BanII GRGCYC 3 cut(s) 91, 770, 858
BbsI GAAGAC 1 cut(s) 435
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 3 cut(s) 390, 474, 611
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 706
BcoDI GTCTC 5 cut(s) 17, 107, 137, 417, 546
BfmI CTRYAG 1 cut(s) 383
BglII AGATCT 1 cut(s) 351
BisI GCNGC 8 cut(s) 27, 95, 343, 363, 379, 414, 463, 600
BlsI GCNGC 8 cut(s) 28, 96, 344, 364, 380, 415, 464, 601
Bme18I GGWCC 3 cut(s) 213, 584, 702
BmeT110I CYCGRG 2 cut(s) 501, 679
BmgT120I GGNCC 6 cut(s) 213, 523, 584, 694, 702, 879
BmiI GGNNCC 4 cut(s) 90, 215, 767, 855
BmrI ACTGGG 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 4 cut(s) 73, 105, 383, 415
Bpu10I CCTNAGC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 824
BsaHI GRCGYC 3 cut(s) 276, 365, 507
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 149, 500, 501, 679
BsaWI WCCGGW 3 cut(s) 223, 292, 802
BsaXI ACNNNNNCTCC 4 cut(s) 350, 380, 568, 598
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 338, 532, 632
Bse118I RCCGGY 6 cut(s) 97, 223, 292, 478, 669, 712
Bse1I ACTGG 3 cut(s) 179, 246, 320
BseBI CCWGG 1 cut(s) 706
BseDI CCNNGG 4 cut(s) 149, 500, 501, 679
BseLI CCNNNNNNNGG 4 cut(s) 223, 338, 532, 632
BseMII CTCAG 3 cut(s) 28, 54, 651
BseNI ACTGG 3 cut(s) 179, 246, 320
BseRI GAGGAG 4 cut(s) 10, 323, 866, 881
BseXI GCAGC 3 cut(s) 390, 474, 611
Bsh1236I CGCG 2 cut(s) 550, 563
BshFI GGCC 5 cut(s) 154, 520, 525, 696, 880
BshTI ACCGGT 2 cut(s) 223, 292
BsiHKCI CYCGRG 2 cut(s) 501, 679
BslFI GGGAC 2 cut(s) 518, 877
BslI CCNNNNNNNGG 4 cut(s) 223, 338, 532, 632
BsmAI GTCTC 5 cut(s) 17, 107, 137, 417, 546
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 2 cut(s) 518, 877
BsmI GAATGC 2 cut(s) 601, 926
BsnI GGCC 5 cut(s) 154, 520, 525, 696, 880
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 2 cut(s) 501, 679
Bsp119I TTCGAA 1 cut(s) 824
Bsp1286I GDGCHC 3 cut(s) 91, 770, 858
Bsp143I GATC 5 cut(s) 71, 190, 244, 351, 650
BspANI GGCC 5 cut(s) 154, 520, 525, 696, 880
BspCNI CTCAG 3 cut(s) 27, 53, 652
BspFNI CGCG 2 cut(s) 550, 563
BspLI GGNNCC 4 cut(s) 90, 215, 767, 855
BspMAI CTGCAG 1 cut(s) 387
BspPI GGATC 3 cut(s) 66, 252, 658
BspT104I TTCGAA 1 cut(s) 824
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 6 cut(s) 97, 223, 292, 478, 669, 712
BsrI ACTGG 3 cut(s) 179, 246, 320
BssAI RCCGGY 6 cut(s) 97, 223, 292, 478, 669, 712
BssECI CCNNGG 4 cut(s) 149, 500, 501, 679
BssMI GATC 5 cut(s) 71, 190, 244, 351, 650
BssNI GRCGYC 3 cut(s) 276, 365, 507
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 3 cut(s) 118, 584, 737
Bst6I CTCTTC 4 cut(s) 105, 203, 257, 317
BstACI GRCGYC 3 cut(s) 276, 365, 507
BstBI TTCGAA 1 cut(s) 824
BstC8I GCNNGC 3 cut(s) 383, 714, 882
BstDEI CTNAG 3 cut(s) 14, 40, 660
BstFNI CGCG 2 cut(s) 550, 563
BstKTI GATC 5 cut(s) 74, 193, 247, 354, 653
BstMAI GTCTC 5 cut(s) 17, 107, 137, 417, 546
BstMBI GATC 5 cut(s) 71, 190, 244, 351, 650
BstMWI GCNNNNNNNGC 4 cut(s) 15, 387, 410, 608
BstNI CCWGG 1 cut(s) 706
BstNSI RCATGY 1 cut(s) 911
BstSFI CTRYAG 1 cut(s) 383
BstUI CGCG 2 cut(s) 550, 563
BstV1I GCAGC 3 cut(s) 390, 474, 611
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 2 cut(s) 71, 351
BstYI RGATCY 2 cut(s) 71, 351
BsuRI GGCC 5 cut(s) 154, 520, 525, 696, 880
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 383, 714, 882
Cfr10I RCCGGY 6 cut(s) 97, 223, 292, 478, 669, 712
Cfr13I GGNCC 6 cut(s) 213, 523, 584, 694, 702, 879
Cfr9I CCCGGG 2 cut(s) 501, 679
CpoI CGGWCCG 1 cut(s) 584
CseI GACGC 4 cut(s) 354, 552, 556, 569
Csp6I GTAC 1 cut(s) 580
CspAI ACCGGT 2 cut(s) 223, 292
CspI CGGWCCG 1 cut(s) 584
CviAII CATG 1 cut(s) 908
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 3 cut(s) 14, 40, 660
DpnI GATC 5 cut(s) 73, 192, 246, 353, 652
DpnII GATC 5 cut(s) 71, 190, 244, 351, 650
DrdI GACNNNNNNGTC 1 cut(s) 562
DseDI GACNNNNNNGTC 1 cut(s) 562
Eam1104I CTCTTC 4 cut(s) 105, 203, 257, 317
EarI CTCTTC 4 cut(s) 105, 203, 257, 317
EciI GGCGGA 4 cut(s) 13, 81, 320, 360
Eco24I GRGCYC 3 cut(s) 91, 770, 858
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 3 cut(s) 213, 584, 702
Eco88I CYCGRG 2 cut(s) 501, 679
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 704
EcoT38I GRGCYC 3 cut(s) 91, 770, 858
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 1 cut(s) 911
FaiI YATR 3 cut(s) 376, 909, 937
FaqI GGGAC 2 cut(s) 518, 877
FatI CATG 1 cut(s) 907
FauI CCCGC 2 cut(s) 636, 889
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 8 cut(s) 27, 95, 343, 363, 379, 414, 463, 600
FriOI GRGCYC 3 cut(s) 91, 770, 858
Fsp4HI GCNGC 8 cut(s) 27, 95, 343, 363, 379, 414, 463, 600
GluI GCNGC 8 cut(s) 27, 95, 343, 363, 379, 414, 463, 600
HaeIII GGCC 5 cut(s) 154, 520, 525, 696, 880
HgaI GACGC 4 cut(s) 354, 552, 556, 569
Hin1I GRCGYC 3 cut(s) 276, 365, 507
Hin1II CATG 1 cut(s) 911
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 662, 799, 890
HphI GGTGA 2 cut(s) 493, 695
Hpy166II GTNNAC 3 cut(s) 106, 274, 457
Hpy188III TCNNGA 3 cut(s) 188, 200, 254
Hpy8I GTNNAC 3 cut(s) 106, 274, 457
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 3 cut(s) 118, 584, 737
HpyCH4IV ACGT 2 cut(s) 276, 507
HpyCH4V TGCA 3 cut(s) 378, 385, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 387, 410, 608
HpyF3I CTNAG 3 cut(s) 14, 40, 660
HpySE526I ACGT 2 cut(s) 276, 507
Hsp92I GRCGYC 3 cut(s) 276, 365, 507
Hsp92II CATG 1 cut(s) 911
KroI GCCGGC 1 cut(s) 712
KroNI GCCGGC 1 cut(s) 714
Kzo9I GATC 5 cut(s) 71, 190, 244, 351, 650
LmnI GCTCC 5 cut(s) 23, 49, 94, 765, 853
Lsp1109I GCAGC 3 cut(s) 390, 474, 611
MaeII ACGT 2 cut(s) 276, 507
MaeIII GTNAC 1 cut(s) 674
MalI GATC 5 cut(s) 73, 192, 246, 353, 652
MboI GATC 5 cut(s) 71, 190, 244, 351, 650
MboII GAAGA 5 cut(s) 122, 220, 274, 334, 440
MflI RGATCY 2 cut(s) 71, 351
MhlI GDGCHC 3 cut(s) 91, 770, 858
MluCI AATT 2 cut(s) 195, 485
MluI ACGCGT 1 cut(s) 561
MlyI GAGTC 3 cut(s) 671, 808, 899
MmeI TCCRAC 7 cut(s) 99, 348, 554, 569, 628, 743, 776
MreI CGCCGGCG 1 cut(s) 712
MroNI GCCGGC 1 cut(s) 712
MseI TTAA 1 cut(s) 744
Mva1269I GAATGC 2 cut(s) 601, 926
MvaI CCWGG 1 cut(s) 706
MvnI CGCG 2 cut(s) 550, 563
MwoI GCNNNNNNNGC 4 cut(s) 15, 387, 410, 608
NaeI GCCGGC 1 cut(s) 714
NdeII GATC 5 cut(s) 71, 190, 244, 351, 650
NgoMIV GCCGGC 1 cut(s) 712
NlaIII CATG 1 cut(s) 911
NlaIV GGNNCC 4 cut(s) 90, 215, 767, 855
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 674
NspI RCATGY 1 cut(s) 911
NspV TTCGAA 1 cut(s) 824
PciI ACATGT 1 cut(s) 907
PcsI WCGNNNNNNNCGW 5 cut(s) 114, 362, 413, 716, 830
PctI GAATGC 2 cut(s) 601, 926
PdiI GCCGGC 1 cut(s) 714
PflFI GACNNNGTC 1 cut(s) 661
PinAI ACCGGT 2 cut(s) 223, 292
PkrI GCNGC 8 cut(s) 28, 96, 344, 364, 380, 415, 464, 601
PleI GAGTC 3 cut(s) 670, 807, 898
PpsI GAGTC 3 cut(s) 670, 807, 898
PpuMI RGGWCCY 1 cut(s) 213
PscI ACATGT 1 cut(s) 907
Psp5II RGGWCCY 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 704
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 4 cut(s) 90, 215, 767, 855
PspPI GGNCC 6 cut(s) 213, 523, 584, 694, 702, 879
PspPPI RGGWCCY 1 cut(s) 213
PstI CTGCAG 1 cut(s) 387
PsuI RGATCY 2 cut(s) 71, 351
PsyI GACNNNGTC 1 cut(s) 661
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
Rsr2I CGGWCCG 1 cut(s) 584
RsrII CGGWCCG 1 cut(s) 584
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 8 cut(s) 27, 95, 343, 363, 379, 414, 463, 600
Sau3AI GATC 5 cut(s) 71, 190, 244, 351, 650
Sau96I GGNCC 6 cut(s) 213, 523, 584, 694, 702, 879
SchI GAGTC 3 cut(s) 671, 808, 899
SduI GDGCHC 3 cut(s) 91, 770, 858
SfcI CTRYAG 1 cut(s) 383
SfuI TTCGAA 1 cut(s) 824
SgrAI CRCCGGYG 3 cut(s) 97, 478, 712
SgrDI CGTCGACG 1 cut(s) 272
SinI GGWCC 3 cut(s) 213, 584, 702
SmaI CCCGGG 2 cut(s) 503, 681
Sse9I AATT 2 cut(s) 195, 485
SspI AATATT 1 cut(s) 846
TaaI ACNGT 3 cut(s) 118, 584, 737
TaiI ACGT 2 cut(s) 279, 510
TaqI TCGA 5 cut(s) 273, 653, 665, 824, 833
TasI AATT 2 cut(s) 195, 485
TauI GCSGC 5 cut(s) 29, 97, 345, 365, 416
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 3 cut(s) 378, 462, 599
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 1 cut(s) 916
TspGWI ACGGA 2 cut(s) 572, 743
TspMI CCCGGG 2 cut(s) 501, 679
TspRI CASTG 1 cut(s) 186
Tth111I GACNNNGTC 1 cut(s) 661
VpaK11BI GGWCC 3 cut(s) 213, 584, 702
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 911
XmaI CCCGGG 2 cut(s) 501, 679
XmiI GTMKAC 1 cut(s) 273
ZraI GACGTC 2 cut(s) 277, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.