RLG00000031457

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014354
Physical Location & Seq
Forward (+)
5384999 .. 5385928
930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031457

Sequence Viewer

Length: 930 bp
ATGGGGTGCTGTCTCAGCTCCTCCGCCACCGACAAGTCCTCAGCTCCCAATCAGCCCCCACATTTCCAGAGATCCGACGAGAGCAGGGCTCCGCCGCCGGTGGTGGACGAAGAGACCGTGAAGGAAGTGCTTTCAGTTTCAGAGACACCGAGGCCGAAGCCAACCCAAGAACAAGAACCAGTGTTTCAAGATCAAATTCAAGAACAGAAGAGGACCCAAGAACCGGTGTTTGAAGTGAAACTGGATCGGGTTCAAGAACCGAAGAGGGTCGTCGACGTCCAAGAACTACTACCGGTCTTTGAGGCGGAGGAGAACTGGGAGAAGAGAATACCCATTTCTGGCGGCGGAGAGATCTCGGAGGCGGCGTCGGAGATTTGCAGCCTGCAGAGCGAGAGCTTCTCGGCGACGACGGCGGCGACCAGAGACGAAGACGATGAGGTTCAACAGAGGGTAGTCAACAATAGCAACAGAGTGTCGCCGGTGAAATTACAGAAAAACCCCCGGGACGTCGGGTTTAGGCCGGGTCGGGTGGTGGGTAAGTCTCCGACGCGGAGGACGGACGCGTCGCCGGGTCGGAGGTACGGTGCGAATGGGAATGCAGTCGGGTCAGCGAGGGTGGTTCAACCGGGTCAGGGTGGTAGGCGGGTCGGGTCGAGGATGGAGTCCAACCGGCGTGACCCGGGTGAGAGTTCTGGCCGGAGGTCCAGGTCGCCGGCGACGAGGATTTCGGAGAACGGTGGAGTTAATAGAGCAAATGTGGGTCGGAGCCCGTCCGCTAATAGGAGGTATCCGGGTCGCAGTCCGGTTGAGAGTTCGAATAGTTCGACCCGGAGAATATTTGAGGAGCCCAAAATGGAGGAGGGTAAATGGCCCGCAAATGAGTCCCTTGATAACCCACATGTTTCTTTGGAATGCTTCATTTTCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.13

Weight (kDa)

7.66

Isoelectric Point (pI)

80.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 562
AatII GACGTC 2 cut(s) 279, 510
AccI GTMKAC 1 cut(s) 273
AccII CGCG 2 cut(s) 550, 563
AclWI GGATC 2 cut(s) 66, 252
AcoI YGGCCR 1 cut(s) 694
AcsI RAATTY 1 cut(s) 195
AcyI GRCGYC 3 cut(s) 276, 365, 507
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 4 cut(s) 223, 338, 632, 780
AflIII ACRYGT 2 cut(s) 561, 898
AgeI ACCGGT 2 cut(s) 223, 292
AgsI TTSAA 6 cut(s) 188, 200, 233, 254, 443, 623
AjnI CCWGG 1 cut(s) 704
AluBI AGCT 3 cut(s) 18, 44, 396
AluI AGCT 3 cut(s) 18, 44, 396
Alw26I GTCTC 5 cut(s) 17, 107, 137, 417, 546
AlwI GGATC 2 cut(s) 66, 252
Ama87I CYCGRG 2 cut(s) 501, 679
AoxI GGCC 4 cut(s) 152, 518, 694, 869
ApeKI GCWGC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 195
ArsI GACNNNNNNTTYG 2 cut(s) 709, 741
AsiGI ACCGGT 2 cut(s) 223, 292
AspS9I GGNCC 3 cut(s) 213, 702, 870
AsuC2I CCSGG 9 cut(s) 502, 503, 522, 570, 627, 680, 681, 792, 829
AsuHPI GGTGA 2 cut(s) 493, 695
AsuII TTCGAA 1 cut(s) 815
AvaI CYCGRG 2 cut(s) 501, 679
AvaII GGWCC 2 cut(s) 213, 702
BanII GRGCYC 3 cut(s) 91, 770, 849
BbsI GAAGAC 1 cut(s) 435
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 390
BccI CCATC 1 cut(s) 652
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 706
BciVI GTATCC 1 cut(s) 798
BcnI CCSGG 9 cut(s) 502, 503, 522, 570, 627, 680, 681, 792, 829
BcoDI GTCTC 5 cut(s) 17, 107, 137, 417, 546
BfmI CTRYAG 1 cut(s) 383
BfuI GTATCC 1 cut(s) 798
BglII AGATCT 1 cut(s) 351
BisI GCNGC 5 cut(s) 95, 343, 363, 379, 414
BlsI GCNGC 5 cut(s) 96, 344, 364, 380, 415
Bme18I GGWCC 2 cut(s) 213, 702
BmeT110I CYCGRG 2 cut(s) 501, 679
BmgT120I GGNCC 3 cut(s) 213, 702, 870
BmiI GGNNCC 4 cut(s) 90, 215, 767, 846
BmrI ACTGGG 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 4 cut(s) 73, 105, 383, 415
Bpu10I CCTNAGC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 815
BpuMI CCSGG 9 cut(s) 502, 503, 522, 570, 627, 680, 681, 792, 829
BsaHI GRCGYC 3 cut(s) 276, 365, 507
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 149, 500, 501, 679
BsaWI WCCGGW 3 cut(s) 223, 292, 802
BsaXI ACNNNNNCTCC 4 cut(s) 350, 380, 568, 598
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 338, 632, 780
Bse118I RCCGGY 6 cut(s) 97, 223, 292, 478, 669, 712
Bse1I ACTGG 3 cut(s) 179, 246, 320
BseBI CCWGG 1 cut(s) 706
BseDI CCNNGG 4 cut(s) 149, 500, 501, 679
BseGI GGATG 1 cut(s) 663
BseLI CCNNNNNNNGG 4 cut(s) 223, 338, 632, 780
BseMII CTCAG 2 cut(s) 28, 54
BseNI ACTGG 3 cut(s) 179, 246, 320
BseRI GAGGAG 4 cut(s) 10, 323, 857, 872
BseXI GCAGC 1 cut(s) 390
Bsh1236I CGCG 2 cut(s) 550, 563
BshFI GGCC 4 cut(s) 154, 520, 696, 871
BshTI ACCGGT 2 cut(s) 223, 292
BsiHKCI CYCGRG 2 cut(s) 501, 679
BslFI GGGAC 2 cut(s) 518, 868
BslI CCNNNNNNNGG 4 cut(s) 223, 338, 632, 780
BsmAI GTCTC 5 cut(s) 17, 107, 137, 417, 546
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 2 cut(s) 518, 868
BsmI GAATGC 2 cut(s) 601, 917
BsnI GGCC 4 cut(s) 154, 520, 696, 871
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 2 cut(s) 501, 679
Bsp119I TTCGAA 1 cut(s) 815
Bsp1286I GDGCHC 3 cut(s) 91, 770, 849
Bsp143I GATC 4 cut(s) 71, 190, 244, 351
BspANI GGCC 4 cut(s) 154, 520, 696, 871
BspCNI CTCAG 2 cut(s) 27, 53
BspFNI CGCG 2 cut(s) 550, 563
BspLI GGNNCC 4 cut(s) 90, 215, 767, 846
BspMAI CTGCAG 1 cut(s) 387
BspPI GGATC 2 cut(s) 66, 252
BspT104I TTCGAA 1 cut(s) 815
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 6 cut(s) 97, 223, 292, 478, 669, 712
BsrI ACTGG 3 cut(s) 179, 246, 320
BssAI RCCGGY 6 cut(s) 97, 223, 292, 478, 669, 712
BssECI CCNNGG 4 cut(s) 149, 500, 501, 679
BssMI GATC 4 cut(s) 71, 190, 244, 351
BssNI GRCGYC 3 cut(s) 276, 365, 507
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 3 cut(s) 118, 584, 737
Bst6I CTCTTC 4 cut(s) 105, 203, 257, 317
BstACI GRCGYC 3 cut(s) 276, 365, 507
BstBI TTCGAA 1 cut(s) 815
BstC8I GCNNGC 3 cut(s) 383, 714, 873
BstDEI CTNAG 2 cut(s) 14, 40
BstF5I GGATG 1 cut(s) 663
BstFNI CGCG 2 cut(s) 550, 563
BstKTI GATC 4 cut(s) 74, 193, 247, 354
BstMAI GTCTC 5 cut(s) 17, 107, 137, 417, 546
BstMBI GATC 4 cut(s) 71, 190, 244, 351
BstMWI GCNNNNNNNGC 3 cut(s) 15, 387, 410
BstNI CCWGG 1 cut(s) 706
BstNSI RCATGY 1 cut(s) 902
BstSFI CTRYAG 1 cut(s) 383
BstUI CGCG 2 cut(s) 550, 563
BstV1I GCAGC 1 cut(s) 390
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 2 cut(s) 71, 351
BstYI RGATCY 2 cut(s) 71, 351
BsuI GTATCC 1 cut(s) 798
BsuRI GGCC 4 cut(s) 154, 520, 696, 871
BtsCI GGATG 1 cut(s) 663
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 383, 714, 873
Cfr10I RCCGGY 6 cut(s) 97, 223, 292, 478, 669, 712
Cfr13I GGNCC 3 cut(s) 213, 702, 870
Cfr9I CCCGGG 2 cut(s) 501, 679
CseI GACGC 4 cut(s) 354, 552, 556, 569
Csp6I GTAC 1 cut(s) 580
CspAI ACCGGT 2 cut(s) 223, 292
CviAII CATG 1 cut(s) 899
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 14, 40
DpnI GATC 4 cut(s) 73, 192, 246, 353
DpnII GATC 4 cut(s) 71, 190, 244, 351
DrdI GACNNNNNNGTC 1 cut(s) 562
DseDI GACNNNNNNGTC 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 694
Eam1104I CTCTTC 4 cut(s) 105, 203, 257, 317
EarI CTCTTC 4 cut(s) 105, 203, 257, 317
EciI GGCGGA 4 cut(s) 13, 81, 320, 360
Eco24I GRGCYC 3 cut(s) 91, 770, 849
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 213, 702
Eco88I CYCGRG 2 cut(s) 501, 679
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 704
EcoT38I GRGCYC 3 cut(s) 91, 770, 849
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 1 cut(s) 902
FaiI YATR 2 cut(s) 900, 928
FaqI GGGAC 2 cut(s) 518, 868
FatI CATG 1 cut(s) 898
FauI CCCGC 2 cut(s) 636, 880
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 5 cut(s) 95, 343, 363, 379, 414
FokI GGATG 1 cut(s) 670
FriOI GRGCYC 3 cut(s) 91, 770, 849
Fsp4HI GCNGC 5 cut(s) 95, 343, 363, 379, 414
GluI GCNGC 5 cut(s) 95, 343, 363, 379, 414
HaeIII GGCC 4 cut(s) 154, 520, 696, 871
HgaI GACGC 4 cut(s) 354, 552, 556, 569
Hin1I GRCGYC 3 cut(s) 276, 365, 507
Hin1II CATG 1 cut(s) 902
HincII GTYRAC 2 cut(s) 274, 457
HindII GTYRAC 2 cut(s) 274, 457
HinfI GANTC 2 cut(s) 662, 881
HphI GGTGA 2 cut(s) 493, 695
Hpy166II GTNNAC 3 cut(s) 106, 274, 457
Hpy188I TCNGA 8 cut(s) 76, 142, 358, 370, 546, 576, 730, 765
Hpy188III TCNNGA 4 cut(s) 67, 188, 200, 254
Hpy8I GTNNAC 3 cut(s) 106, 274, 457
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 3 cut(s) 118, 584, 737
HpyCH4IV ACGT 2 cut(s) 276, 507
HpyCH4V TGCA 3 cut(s) 378, 385, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 387, 410
HpyF3I CTNAG 2 cut(s) 14, 40
HpySE526I ACGT 2 cut(s) 276, 507
Hsp92I GRCGYC 3 cut(s) 276, 365, 507
Hsp92II CATG 1 cut(s) 902
KroI GCCGGC 1 cut(s) 712
KroNI GCCGGC 1 cut(s) 714
Kzo9I GATC 4 cut(s) 71, 190, 244, 351
LmnI GCTCC 5 cut(s) 23, 49, 94, 765, 844
Lsp1109I GCAGC 1 cut(s) 390
MaeII ACGT 2 cut(s) 276, 507
MaeIII GTNAC 1 cut(s) 674
MalI GATC 4 cut(s) 73, 192, 246, 353
MboI GATC 4 cut(s) 71, 190, 244, 351
MboII GAAGA 5 cut(s) 122, 220, 274, 334, 440
MflI RGATCY 2 cut(s) 71, 351
MhlI GDGCHC 3 cut(s) 91, 770, 849
MluCI AATT 2 cut(s) 195, 485
MluI ACGCGT 1 cut(s) 561
MlyI GAGTC 2 cut(s) 671, 890
MmeI TCCRAC 6 cut(s) 99, 348, 554, 569, 690, 743
MreI CGCCGGCG 1 cut(s) 712
MroNI GCCGGC 1 cut(s) 712
MseI TTAA 1 cut(s) 744
Mva1269I GAATGC 2 cut(s) 601, 917
MvaI CCWGG 1 cut(s) 706
MvnI CGCG 2 cut(s) 550, 563
MwoI GCNNNNNNNGC 3 cut(s) 15, 387, 410
NaeI GCCGGC 1 cut(s) 714
NciI CCSGG 9 cut(s) 502, 503, 522, 570, 627, 680, 681, 792, 829
NdeII GATC 4 cut(s) 71, 190, 244, 351
NgoMIV GCCGGC 1 cut(s) 712
NlaIII CATG 1 cut(s) 902
NlaIV GGNNCC 4 cut(s) 90, 215, 767, 846
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 674
NspI RCATGY 1 cut(s) 902
NspV TTCGAA 1 cut(s) 815
PciI ACATGT 1 cut(s) 898
PcsI WCGNNNNNNNCGW 5 cut(s) 114, 362, 413, 716, 821
PctI GAATGC 2 cut(s) 601, 917
PdiI GCCGGC 1 cut(s) 714
PinAI ACCGGT 2 cut(s) 223, 292
PkrI GCNGC 5 cut(s) 96, 344, 364, 380, 415
PleI GAGTC 2 cut(s) 670, 889
PpsI GAGTC 2 cut(s) 670, 889
PpuMI RGGWCCY 1 cut(s) 213
PscI ACATGT 1 cut(s) 898
Psp5II RGGWCCY 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 704
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 4 cut(s) 90, 215, 767, 846
PspPI GGNCC 3 cut(s) 213, 702, 870
PspPPI RGGWCCY 1 cut(s) 213
PstI CTGCAG 1 cut(s) 387
PsuI RGATCY 2 cut(s) 71, 351
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 5 cut(s) 95, 343, 363, 379, 414
Sau3AI GATC 4 cut(s) 71, 190, 244, 351
Sau96I GGNCC 3 cut(s) 213, 702, 870
SchI GAGTC 2 cut(s) 671, 890
SduI GDGCHC 3 cut(s) 91, 770, 849
SfcI CTRYAG 1 cut(s) 383
SfuI TTCGAA 1 cut(s) 815
SgrAI CRCCGGYG 3 cut(s) 97, 478, 712
SgrDI CGTCGACG 1 cut(s) 272
SinI GGWCC 2 cut(s) 213, 702
SmaI CCCGGG 2 cut(s) 503, 681
Sse9I AATT 2 cut(s) 195, 485
SspI AATATT 1 cut(s) 837
TaaI ACNGT 3 cut(s) 118, 584, 737
TaiI ACGT 2 cut(s) 279, 510
TaqI TCGA 4 cut(s) 273, 653, 815, 824
TasI AATT 2 cut(s) 195, 485
TauI GCSGC 4 cut(s) 97, 345, 365, 416
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 1 cut(s) 378
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 1 cut(s) 907
TspGWI ACGGA 1 cut(s) 572
TspMI CCCGGG 2 cut(s) 501, 679
TspRI CASTG 1 cut(s) 186
VpaK11BI GGWCC 2 cut(s) 213, 702
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 902
XmaI CCCGGG 2 cut(s) 501, 679
XmiI GTMKAC 1 cut(s) 273
ZraI GACGTC 2 cut(s) 277, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.