FvH4_3g04520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014354
Physical Location & Seq
Forward (+)
2587117 .. 2588921
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04520.t1

Sequence Viewer

Length: 864 bp
ATGGGTTGCTGTCTCAGCTCCACCGACAAGCCCCCAGCTCCCACTCACCGCCCACATTTCCAAAGATCCGACGACAGCAGAGCTCCCCCGCCGCTGGACGAAGAGACCGTCGTCAAGGAAGTGCTCTCCGAGACGCCGACGCCTAAGCCGAAGCTCCAAGAGCCAGTCTTTCAAGATCAGAAGACAATAACCCAATCGCCGCAAGTTGAAGTAAAACTGGATCTTGAAGAAGAAGAAAAAGAGAAGAGGGTGTTCGTCCAAGAAGAACGTGAAGAAGAGAAGAAGTGGGAGAAGAGAGTAGAGATCTCGGAGGACGCGTCGGAGATTTGCAGCCTCCAGAGCGAGAGCGTCTCCGCCACGACGGCGACCAGAGACGAAGACGACGAGGTTCAGCAGAGAGTAGTCAACAGAGTGTCGCCGAGGAAATTACAGAAGAGCCCCCGGGACGGGTTCGGGCCGGGTCGGTTGGTGGGTAAGTCACCGACACGGACGACGGACTCGTCGCCGGGTCGGAGGTATAACGGAGCCGGGTCAACGAGGTCGGCTCAACCGGGTCAGCAGCCAGTGGGTGGCAGGCGGGTCGGGTTGAGGACTGAGCCCAACCGGCGCGACCCGGGTGAGAGTTCGAGTCGGAGGTCCAGGTCGCCTGCGACGAGGGTTACGGATAACGGCGGAGTTAATAGAGCCAATGTGGGTCGGAGTCCGTCTGCTAATAGAAGGTATCCGGGTCGGGCTCCAGTTGAGAGTTCGAATAGTTCGACCCGGAGAATAGCCGAGGAGCCCAAACCGGAGGAGGGGAAATGGACCGCGAATGAGTCACTTGATAACCCGCTTGTTTCTTTGGAATGCTTCATTTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

31.97

Weight (kDa)

7.65

Isoelectric Point (pI)

87.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11125 AT1G61170
fragaria_vesca FvH4_3g04520
malus_domestica MD10G1300500.v1.1
prunus_persica Prupe.4G040000_v2.0.a1
pyrus_communis pycom05g29690 pycom10g25340
rosa_chinensis RchiOBHm_Chr5g0007441
rosa_laevigata RLG00000031457
rosa_multiflora Rmu_co8198018.1_g000001
rosa_roxburghii Rroxscaffold_1G00069030
rosa_rugosa Rorug04G0426900
rosa_samantha Rh5AG055300 Rh5BG052900 Rh5CG062700 Rh5DG051900
rosa_wichuraiana Rw5G005480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 499
AccB7I CCANNNNNTGG 1 cut(s) 569
AccII CGCG 3 cut(s) 317, 609, 809
AciI CCGC 9 cut(s) 49, 89, 92, 200, 354, 577, 672, 807, 830
AclWI GGATC 2 cut(s) 60, 228
AcyI GRCGYC 2 cut(s) 134, 140
AfiI CCNNNNNNNGG 5 cut(s) 94, 446, 447, 569, 794
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 173, 209, 227
AjnI CCWGG 1 cut(s) 638
AluBI AGCT 4 cut(s) 18, 38, 83, 154
AluI AGCT 4 cut(s) 18, 38, 83, 154
Alw21I GWGCWC 2 cut(s) 85, 126
Alw26I GTCTC 5 cut(s) 17, 98, 125, 355, 366
AlwI GGATC 2 cut(s) 60, 228
Ama87I CYCGRG 2 cut(s) 441, 613
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 330, 559
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 3 cut(s) 455, 636, 804
AsuHPI GGTGA 3 cut(s) 38, 471, 629
AsuII TTCGAA 1 cut(s) 749
AvaI CYCGRG 2 cut(s) 441, 613
AvaII GGWCC 2 cut(s) 636, 804
BanII GRGCYC 5 cut(s) 85, 440, 600, 736, 783
BbsI GAAGAC 2 cut(s) 188, 384
Bbv12I GWGCWC 2 cut(s) 85, 126
BbvI GCAGC 2 cut(s) 342, 571
BceAI ACGGC 2 cut(s) 378, 685
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 1 cut(s) 640
BciVI GTATCC 1 cut(s) 732
BcoDI GTCTC 5 cut(s) 17, 98, 125, 355, 366
BfuI GTATCC 1 cut(s) 732
BglI GCCNNNNNGGC 2 cut(s) 362, 604
BglII AGATCT 1 cut(s) 303
BisI GCNGC 4 cut(s) 92, 200, 331, 560
BlsI GCNGC 4 cut(s) 93, 201, 332, 561
Bme18I GGWCC 2 cut(s) 636, 804
BmeT110I CYCGRG 2 cut(s) 441, 613
BmgT120I GGNCC 3 cut(s) 455, 636, 804
BmiI GGNNCC 3 cut(s) 526, 735, 780
BoxI GACNNNNGTC 1 cut(s) 110
BpiI GAAGAC 2 cut(s) 188, 384
BplI GAGNNNNNCTC 4 cut(s) 335, 367, 529, 561
BpmI CTGGAG 2 cut(s) 320, 720
Bpu10I CCTNAGC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 749
BsaHI GRCGYC 2 cut(s) 134, 140
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 5 cut(s) 419, 440, 441, 613, 774
BsaWI WCCGGW 1 cut(s) 787
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 446, 447, 569, 794
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 4 cut(s) 164, 222, 563, 737
BseBI CCWGG 1 cut(s) 640
BseDI CCNNGG 5 cut(s) 419, 440, 441, 613, 774
BseLI CCNNNNNNNGG 5 cut(s) 94, 446, 447, 569, 794
BseMII CTCAG 2 cut(s) 28, 585
BseNI ACTGG 4 cut(s) 164, 222, 563, 737
BseRI GAGGAG 2 cut(s) 791, 806
BseXI GCAGC 2 cut(s) 342, 571
BseYI CCCAGC 1 cut(s) 34
Bsh1236I CGCG 3 cut(s) 317, 609, 809
BshFI GGCC 1 cut(s) 457
BsiHKAI GWGCWC 2 cut(s) 85, 126
BsiHKCI CYCGRG 2 cut(s) 441, 613
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 5 cut(s) 94, 446, 447, 569, 794
BsmAI GTCTC 5 cut(s) 17, 98, 125, 355, 366
BsmBI CGTCTC 3 cut(s) 125, 355, 366
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 851
BsnI GGCC 1 cut(s) 457
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 2 cut(s) 441, 613
Bsp119I TTCGAA 1 cut(s) 749
Bsp1286I GDGCHC 6 cut(s) 85, 126, 440, 600, 736, 783
Bsp143I GATC 4 cut(s) 65, 175, 220, 303
BspACI CCGC 9 cut(s) 49, 89, 92, 200, 354, 577, 672, 807, 830
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 2 cut(s) 27, 586
BspFNI CGCG 3 cut(s) 317, 609, 809
BspLI GGNNCC 3 cut(s) 526, 735, 780
BspPI GGATC 2 cut(s) 60, 228
BspQI GCTCTTC 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 603
BsrI ACTGG 4 cut(s) 164, 222, 563, 737
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 5 cut(s) 419, 440, 441, 613, 774
BssMI GATC 4 cut(s) 65, 175, 220, 303
BssNI GRCGYC 2 cut(s) 134, 140
Bst2UI CCWGG 1 cut(s) 640
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 5 cut(s) 96, 239, 270, 287, 428
BstACI GRCGYC 2 cut(s) 134, 140
BstBI TTCGAA 1 cut(s) 749
BstC8I GCNNGC 2 cut(s) 575, 648
BstDEI CTNAG 3 cut(s) 14, 144, 594
BstFNI CGCG 3 cut(s) 317, 609, 809
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 4 cut(s) 68, 178, 223, 306
BstMAI GTCTC 5 cut(s) 17, 98, 125, 355, 366
BstMBI GATC 4 cut(s) 65, 175, 220, 303
BstMWI GCNNNNNNNGC 5 cut(s) 15, 160, 339, 362, 604
BstNI CCWGG 1 cut(s) 640
BstPAI GACNNNNGTC 1 cut(s) 110
BstUI CGCG 3 cut(s) 317, 609, 809
BstV1I GCAGC 2 cut(s) 342, 571
BstV2I GAAGAC 2 cut(s) 188, 384
BstX2I RGATCY 3 cut(s) 65, 220, 303
BstYI RGATCY 3 cut(s) 65, 220, 303
BsuI GTATCC 1 cut(s) 732
BsuRI GGCC 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 575, 648
CfoI GCGC 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 603
Cfr13I GGNCC 3 cut(s) 455, 636, 804
Cfr9I CCCGGG 2 cut(s) 441, 613
CseI GACGC 5 cut(s) 142, 148, 306, 323, 337
DdeI CTNAG 3 cut(s) 14, 144, 594
DpnI GATC 4 cut(s) 67, 177, 222, 305
DpnII GATC 4 cut(s) 65, 175, 220, 303
DrdI GACNNNNNNGTC 1 cut(s) 499
DseDI GACNNNNNNGTC 1 cut(s) 499
Eam1104I CTCTTC 5 cut(s) 96, 239, 270, 287, 428
EarI CTCTTC 5 cut(s) 96, 239, 270, 287, 428
EciI GGCGGA 2 cut(s) 343, 687
Ecl136II GAGCTC 1 cut(s) 83
Eco24I GRGCYC 5 cut(s) 85, 440, 600, 736, 783
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 636, 804
Eco53kI GAGCTC 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 441, 613
EcoICRI GAGCTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 638
EcoT38I GRGCYC 5 cut(s) 85, 440, 600, 736, 783
Esp3I CGTCTC 3 cut(s) 125, 355, 366
FaiI YATR 2 cut(s) 519, 862
FaqI GGGAC 1 cut(s) 458
FauI CCCGC 3 cut(s) 96, 570, 837
Fnu4HI GCNGC 4 cut(s) 92, 200, 331, 560
FriOI GRGCYC 5 cut(s) 85, 440, 600, 736, 783
Fsp4HI GCNGC 4 cut(s) 92, 200, 331, 560
GlaI GCGC 1 cut(s) 608
GluI GCNGC 4 cut(s) 92, 200, 331, 560
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 2 cut(s) 320, 720
HaeIII GGCC 1 cut(s) 457
HgaI GACGC 5 cut(s) 142, 148, 306, 323, 337
HhaI GCGC 1 cut(s) 609
Hin1I GRCGYC 2 cut(s) 134, 140
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 2 cut(s) 406, 534
HindII GTYRAC 2 cut(s) 406, 534
HinfI GANTC 4 cut(s) 497, 628, 700, 815
HphI GGTGA 3 cut(s) 38, 471, 629
Hpy166II GTNNAC 2 cut(s) 406, 534
Hpy188I TCNGA 8 cut(s) 70, 130, 180, 310, 322, 513, 633, 699
Hpy188III TCNNGA 3 cut(s) 173, 224, 337
Hpy8I GTNNAC 2 cut(s) 406, 534
Hpy99I CGWCG 9 cut(s) 74, 113, 142, 322, 364, 386, 496, 505, 655
HpyAV CCTTC 1 cut(s) 711
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 160, 339, 362, 604
HpyF3I CTNAG 3 cut(s) 14, 144, 594
HpySE526I ACGT 1 cut(s) 268
Hsp92I GRCGYC 2 cut(s) 134, 140
HspAI GCGC 1 cut(s) 607
Kzo9I GATC 4 cut(s) 65, 175, 220, 303
LguI GCTCTTC 1 cut(s) 428
LmnI GCTCC 7 cut(s) 23, 43, 88, 159, 524, 739, 778
Lsp1109I GCAGC 2 cut(s) 342, 571
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 3 cut(s) 477, 658, 816
MalI GATC 4 cut(s) 67, 177, 222, 305
MboI GATC 4 cut(s) 65, 175, 220, 303
MflI RGATCY 3 cut(s) 65, 220, 303
MhlI GDGCHC 6 cut(s) 85, 126, 440, 600, 736, 783
MluCI AATT 1 cut(s) 425
MluI ACGCGT 1 cut(s) 315
MlyI GAGTC 4 cut(s) 491, 637, 709, 824
MmeI TCCRAC 5 cut(s) 93, 300, 491, 611, 677
MseI TTAA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 851
MvaI CCWGG 1 cut(s) 640
MvnI CGCG 3 cut(s) 317, 609, 809
MwoI GCNNNNNNNGC 5 cut(s) 15, 160, 339, 362, 604
NdeII GATC 4 cut(s) 65, 175, 220, 303
NlaIV GGNNCC 3 cut(s) 526, 735, 780
NmeAIII GCCGAG 2 cut(s) 444, 799
NmuCI GTSAC 2 cut(s) 477, 816
NspV TTCGAA 1 cut(s) 749
PciSI GCTCTTC 1 cut(s) 428
PcsI WCGNNNNNNNCGW 7 cut(s) 105, 146, 314, 381, 497, 650, 755
PctI GAATGC 1 cut(s) 851
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 4 cut(s) 93, 201, 332, 561
PleI GAGTC 4 cut(s) 491, 636, 708, 823
PpsI GAGTC 4 cut(s) 491, 636, 708, 823
PshAI GACNNNNGTC 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 638
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 638
PspN4I GGNNCC 3 cut(s) 526, 735, 780
PspPI GGNCC 3 cut(s) 455, 636, 804
PsuI RGATCY 3 cut(s) 65, 220, 303
SacI GAGCTC 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 4 cut(s) 92, 200, 331, 560
Sau3AI GATC 4 cut(s) 65, 175, 220, 303
Sau96I GGNCC 3 cut(s) 455, 636, 804
SchI GAGTC 4 cut(s) 491, 637, 709, 824
SduI GDGCHC 6 cut(s) 85, 126, 440, 600, 736, 783
SfuI TTCGAA 1 cut(s) 749
SinI GGWCC 2 cut(s) 636, 804
SmaI CCCGGG 2 cut(s) 443, 615
Sse9I AATT 1 cut(s) 425
SsiI CCGC 9 cut(s) 49, 89, 92, 200, 354, 577, 672, 807, 830
SstI GAGCTC 1 cut(s) 85
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 271
TaqI TCGA 3 cut(s) 626, 749, 758
TasI AATT 1 cut(s) 425
TauI GCSGC 2 cut(s) 94, 202
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 2 cut(s) 477, 816
TseI GCWGC 2 cut(s) 330, 559
Tsp45I GTSAC 2 cut(s) 477, 816
TspDTI ATGAA 1 cut(s) 841
TspGWI ACGGA 5 cut(s) 502, 509, 537, 677, 693
TspMI CCCGGG 2 cut(s) 441, 613
TspRI CASTG 1 cut(s) 570
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 636, 804
XmaI CCCGGG 2 cut(s) 441, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.