Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004036

Physical Location & Seq

Genomic Coordinates Forward (+)

3873029 .. 3873619

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACGTTTAGATTTCCGATTTCCTTCCTTAAAAATTTGGAAATTAGCTATATTGACCAATTTTATTTCCCTATATTTTATCTCTTACAAATAAATGTTAGATCTCTCTTTTCACAACAACACCCGAATATGACCGCTCATTCAATCGTCGCACACGTTGATAGCGTCCTTCCCAAGAAATCTCGTGAGATCGACCGTCGCCGCCGCAGACGGAAGCGGAAGAAGAAGAACAAAGCATCTCAGGCCGATGTAGATGCAATGGACGTGTCAAAATCTCTGTCAAGCACTCCTACTGGTATTGAGACACCGGATGCAATTGAACTTCGTAAGGAACAGAGAAAGGAACCTGATAGGGCTCTATACCAGGTACTTGAAGAAAAGGGAGAGAGTGTTGTTGCTCCTGGAACATTGCTGAGAACTACACACACATACGTTATTAAGACTGGTACTCAGGACAAGACGGGAACCAAAAGGGTTGATTTGCTGAGAGGGCAAAAGACAGATAGAGTGGATTTCAGTTTACAGCCAGAAGAGCTGGATGCTATGGGAAATGTTTTACAGTATGAGGAGGCAAGAGAAGAGGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

196

Amino Acids

22.74

Weight (kDa)

9.44

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11520 AT4G21660 AT4G21660 AT4G21660
fragaria_vesca	FvH4_3g04740 FvH4_6g45300
malus_domestica	MD05G1318200.v1.1 MD10G1297600.v1.1
prunus_persica	Prupe.4G042600_v2.0.a1 Prupe.4G042600_v2.0.a1
pyrus_communis	pycom05g29460 pycom10g25110
rosa_chinensis	RchiOBHm_Chr2g0163041 RchiOBHm_Chr5g0007761
rosa_laevigata	RLG00000021367 RLG00000031486
rosa_multiflora	Rmu_co8286435.1_g000001 Rmu_co8351911.1_g000001 Rmu_sc0005098.1_g000019 Rmu_sc0007039.1_g000007
rosa_roxburghii	Rroxscaffold_1G00068650 Rroxscaffold_2G00087600
rosa_rugosa	Rorug02G0500000.1 Rorug04G0430100
rosa_samantha	Rh2AG566300 Rh2BG578600 Rh2CG548500 Rh5AG058500 Rh5BG055300 Rh5CG065100 Rh5DG054300
rosa_wichuraiana	Rw2G046870 Rw5G006120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	137
AciI	CCGC	4 cut(s)	135, 202, 205, 217
AcsI	RAATTY	1 cut(s)	34
AfaI	GTAC	2 cut(s)	369, 448
AflIII	ACRYGT	2 cut(s)	154, 264
AgsI	TTSAA	3 cut(s)	144, 320, 374
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	363, 400
AluBI	AGCT	2 cut(s)	48, 535
AluI	AGCT	2 cut(s)	48, 535
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
BanII	GRGCYC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	183
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	2 cut(s)	365, 402
BcoDI	GTCTC	1 cut(s)	296
BglII	AGATCT	1 cut(s)	101
BisI	GCNGC	2 cut(s)	202, 205
BlsI	GCNGC	2 cut(s)	203, 206
Bme1390I	CCNGG	2 cut(s)	365, 402
BmgBI	CACGTC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	345, 466
BmrFI	CCNGG	2 cut(s)	365, 402
BmsI	GCATC	4 cut(s)	244, 245, 301, 529
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bse1I	ACTGG	2 cut(s)	298, 448
Bse3DI	GCAATG	2 cut(s)	264, 407
BseBI	CCWGG	2 cut(s)	365, 402
BseGI	GGATG	2 cut(s)	316, 544
BseMI	GCAATG	2 cut(s)	264, 407
BseMII	CTCAG	4 cut(s)	254, 404, 464, 476
BseNI	ACTGG	2 cut(s)	298, 448
BseRI	GAGGAG	1 cut(s)	581
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	101, 189
BspACI	CCGC	4 cut(s)	135, 202, 205, 217
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	4 cut(s)	253, 405, 463, 477
BspLI	GGNNCC	2 cut(s)	345, 466
BspQI	GCTCTTC	1 cut(s)	525
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	264, 407
BsrI	ACTGG	2 cut(s)	298, 448
BssMI	GATC	2 cut(s)	101, 189
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	365, 402
Bst4CI	ACNGT	2 cut(s)	197, 561
Bst6I	CTCTTC	2 cut(s)	525, 573
BstDEI	CTNAG	4 cut(s)	240, 413, 450, 485
BstF5I	GGATG	2 cut(s)	316, 544
BstKTI	GATC	2 cut(s)	104, 192
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	101, 189
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 490, 532
BstNI	CCWGG	2 cut(s)	365, 402
BstSCI	CCNGG	2 cut(s)	363, 400
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	316, 544
CseI	GACGC	1 cut(s)	154
CsiI	ACCWGGT	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	368, 447
CviJI	RGCY	5 cut(s)	48, 245, 356, 526, 535
CviKI_1	RGCY	5 cut(s)	48, 245, 356, 526, 535
CviQI	GTAC	2 cut(s)	368, 447
DdeI	CTNAG	4 cut(s)	240, 413, 450, 485
DpnI	GATC	2 cut(s)	103, 191
DpnII	GATC	2 cut(s)	101, 189
Eam1104I	CTCTTC	2 cut(s)	525, 573
EarI	CTCTTC	2 cut(s)	525, 573
Eco24I	GRGCYC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	363, 400
EcoT38I	GRGCYC	1 cut(s)	358
FaiI	YATR	7 cut(s)	51, 74, 131, 361, 430, 545, 564
Fnu4HI	GCNGC	2 cut(s)	202, 205
FokI	GGATG	2 cut(s)	323, 551
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	202, 205
GluI	GCNGC	2 cut(s)	202, 205
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	185, 452
Hpy8I	GTNNAC	1 cut(s)	521
Hpy99I	CGWCG	2 cut(s)	152, 201
HpyAV	CCTTC	2 cut(s)	34, 179
HpyCH4III	ACNGT	2 cut(s)	197, 561
HpyCH4IV	ACGT	4 cut(s)	5, 156, 264, 432
HpyCH4V	TGCA	2 cut(s)	257, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 490, 532
HpyF3I	CTNAG	4 cut(s)	240, 413, 450, 485
HpySE526I	ACGT	4 cut(s)	5, 156, 264, 432
Kzo9I	GATC	2 cut(s)	101, 189
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	1 cut(s)	403
LweI	GCATC	4 cut(s)	244, 245, 301, 529
MabI	ACCWGGT	1 cut(s)	363
MaeII	ACGT	4 cut(s)	5, 156, 264, 432
MalI	GATC	2 cut(s)	103, 191
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	2 cut(s)	101, 189
MboII	GAAGA	6 cut(s)	232, 235, 238, 386, 542, 590
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	4 cut(s)	34, 42, 59, 315
MnlI	CCTC	4 cut(s)	482, 559, 562, 574
MseI	TTAA	2 cut(s)	30, 438
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	365, 402
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	365, 402
MwoI	GCNNNNNNNGC	3 cut(s)	242, 490, 532
NdeII	GATC	2 cut(s)	101, 189
NlaIV	GGNNCC	2 cut(s)	345, 466
PciSI	GCTCTTC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 162
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	203, 206
Psp6I	CCWGG	2 cut(s)	363, 400
PspGI	CCWGG	2 cut(s)	363, 400
PspN4I	GGNNCC	2 cut(s)	345, 466
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	2 cut(s)	369, 448
RsaNI	GTAC	2 cut(s)	368, 447
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	30, 438
SatI	GCNGC	2 cut(s)	202, 205
Sau3AI	GATC	2 cut(s)	101, 189
ScrFI	CCNGG	2 cut(s)	365, 402
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	8 cut(s)	8, 50, 159, 267, 349, 369, 435, 537
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	4 cut(s)	244, 245, 301, 529
Sse9I	AATT	4 cut(s)	34, 42, 59, 315
SsiI	CCGC	4 cut(s)	135, 202, 205, 217
StyD4I	CCNGG	2 cut(s)	363, 400
TaaI	ACNGT	2 cut(s)	197, 561
TaiI	ACGT	4 cut(s)	8, 159, 267, 435
TaqI	TCGA	1 cut(s)	192
TasI	AATT	4 cut(s)	34, 42, 59, 315
TauI	GCSGC	2 cut(s)	204, 207
Tru1I	TTAA	2 cut(s)	30, 438
Tru9I	TTAA	2 cut(s)	30, 438
TspGWI	ACGGA	1 cut(s)	226
XapI	RAATTY	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.