Splicing factor 3B subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G11520 AT4G21660 AT4G21660 AT4G21660 |
| fragaria_vesca | FvH4_3g04740 FvH4_6g45300 |
| malus_domestica | MD05G1318200.v1.1 MD10G1297600.v1.1 |
| prunus_persica | Prupe.4G042600_v2.0.a1 Prupe.4G042600_v2.0.a1 |
| pyrus_communis | pycom05g29460 pycom10g25110 |
| rosa_chinensis | RchiOBHm_Chr2g0163041 RchiOBHm_Chr5g0007761 |
| rosa_laevigata | RLG00000021367 RLG00000031486 |
| rosa_multiflora | Rmu_co8286435.1_g000001 Rmu_co8351911.1_g000001 Rmu_sc0005098.1_g000019 Rmu_sc0007039.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00068650 Rroxscaffold_2G00087600 |
| rosa_rugosa | Rorug02G0500000.1 Rorug04G0430100 |
| rosa_samantha | Rh2AG566300 Rh2BG578600 Rh2CG548500 Rh5AG058500 Rh5BG055300 Rh5CG065100 Rh5DG054300 |
| rosa_wichuraiana | Rw2G046870 Rw5G006120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 38, 424, 752 |
| AccII | CGCG | 1 cut(s) | 297 |
| AciI | CCGC | 7 cut(s) | 182, 314, 809, 897, 1131, 1168, 1481 |
| AclI | AACGTT | 1 cut(s) | 975 |
| AclWI | GGATC | 5 cut(s) | 53, 371, 490, 744, 1335 |
| AcoI | YGGCCR | 1 cut(s) | 955 |
| AcsI | RAATTY | 1 cut(s) | 235 |
| AcuI | CTGAAG | 1 cut(s) | 1398 |
| AcvI | CACGTG | 1 cut(s) | 470 |
| AdeI | CACNNNGTG | 1 cut(s) | 473 |
| AfaI | GTAC | 7 cut(s) | 420, 545, 636, 698, 1149, 1208, 1215 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 608, 893, 968 |
| AflIII | ACRYGT | 2 cut(s) | 467, 1269 |
| AjnI | CCWGG | 2 cut(s) | 630, 1427 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 1541 |
| Alw26I | GTCTC | 2 cut(s) | 8, 1293 |
| AlwI | GGATC | 5 cut(s) | 53, 371, 490, 744, 1335 |
| Ama87I | CYCGRG | 1 cut(s) | 871 |
| AoxI | GGCC | 3 cut(s) | 338, 955, 1199 |
| ApoI | RAATTY | 1 cut(s) | 235 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 96 |
| AspLEI | GCGC | 1 cut(s) | 297 |
| AspS9I | GGNCC | 1 cut(s) | 839 |
| AsuC2I | CCSGG | 5 cut(s) | 750, 872, 873, 894, 921 |
| AsuHPI | GGTGA | 3 cut(s) | 701, 736, 1049 |
| AsuII | TTCGAA | 1 cut(s) | 156 |
| AsuNHI | GCTAGC | 1 cut(s) | 902 |
| AvaI | CYCGRG | 1 cut(s) | 871 |
| AvaII | GGWCC | 1 cut(s) | 839 |
| BanI | GGYRCC | 3 cut(s) | 38, 424, 752 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 437, 469 |
| BbrPI | CACGTG | 1 cut(s) | 470 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| BccI | CCATC | 7 cut(s) | 119, 222, 601, 610, 727, 856, 924 |
| BceAI | ACGGC | 1 cut(s) | 796 |
| BciT130I | CCWGG | 2 cut(s) | 632, 1429 |
| BclI | TGATCA | 2 cut(s) | 718, 1138 |
| BcnI | CCSGG | 5 cut(s) | 750, 872, 873, 894, 921 |
| BcoDI | GTCTC | 2 cut(s) | 8, 1293 |
| BfaI | CTAG | 2 cut(s) | 903, 1561 |
| BfmI | CTRYAG | 4 cut(s) | 9, 369, 1110, 1242 |
| BmcAI | AGTACT | 1 cut(s) | 1215 |
| Bme1390I | CCNGG | 7 cut(s) | 632, 750, 872, 873, 894, 921, 1429 |
| Bme18I | GGWCC | 1 cut(s) | 839 |
| BmeT110I | CYCGRG | 1 cut(s) | 871 |
| BmgT120I | GGNCC | 1 cut(s) | 839 |
| BmiI | GGNNCC | 4 cut(s) | 40, 426, 440, 754 |
| BmrFI | CCNGG | 7 cut(s) | 632, 750, 872, 873, 894, 921, 1429 |
| BmsI | GCATC | 6 cut(s) | 37, 352, 634, 667, 1434, 1500 |
| BmtI | GCTAGC | 1 cut(s) | 906 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| Bpu14I | TTCGAA | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 1 cut(s) | 207 |
| BpuMI | CCSGG | 5 cut(s) | 750, 872, 873, 894, 921 |
| BsaAI | YACGTR | 2 cut(s) | 470, 1272 |
| BsaBI | GATNNNNATC | 1 cut(s) | 213 |
| BsaJI | CCNNGG | 6 cut(s) | 428, 812, 871, 872, 892, 1428 |
| BsaWI | WCCGGW | 1 cut(s) | 408 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1388, 1418 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 608, 893, 968 |
| Bse118I | RCCGGY | 1 cut(s) | 1012 |
| Bse3DI | GCAATG | 3 cut(s) | 309, 507, 1250 |
| Bse8I | GATNNNNATC | 1 cut(s) | 213 |
| BseBI | CCWGG | 2 cut(s) | 632, 1429 |
| BseDI | CCNNGG | 6 cut(s) | 428, 812, 871, 872, 892, 1428 |
| BseGI | GGATG | 6 cut(s) | 28, 130, 367, 916, 1102, 1366 |
| BseJI | GATNNNNATC | 1 cut(s) | 213 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 608, 893, 968 |
| BseMI | GCAATG | 3 cut(s) | 309, 507, 1250 |
| BseMII | CTCAG | 2 cut(s) | 1348, 1401 |
| BseRI | GAGGAG | 2 cut(s) | 1448, 1451 |
| BseYI | CCCAGC | 1 cut(s) | 927 |
| Bsh1236I | CGCG | 1 cut(s) | 297 |
| BshFI | GGCC | 3 cut(s) | 340, 957, 1201 |
| BshNI | GGYRCC | 3 cut(s) | 38, 424, 752 |
| BsiHKCI | CYCGRG | 1 cut(s) | 871 |
| BsiSI | CCGG | 7 cut(s) | 409, 749, 872, 894, 920, 1013, 1457 |
| BslFI | GGGAC | 1 cut(s) | 1261 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 608, 893, 968 |
| BsmAI | GTCTC | 2 cut(s) | 8, 1293 |
| BsmBI | CGTCTC | 1 cut(s) | 1293 |
| BsmFI | GGGAC | 1 cut(s) | 1261 |
| BsmI | GAATGC | 2 cut(s) | 600, 886 |
| BsnI | GGCC | 3 cut(s) | 340, 957, 1201 |
| BsoBI | CYCGRG | 1 cut(s) | 871 |
| Bsp119I | TTCGAA | 1 cut(s) | 156 |
| BspACI | CCGC | 7 cut(s) | 182, 314, 809, 897, 1131, 1168, 1481 |
| BspANI | GGCC | 3 cut(s) | 340, 957, 1201 |
| BspCNI | CTCAG | 2 cut(s) | 1347, 1402 |
| BspFNI | CGCG | 1 cut(s) | 297 |
| BspHI | TCATGA | 2 cut(s) | 640, 1000 |
| BspLI | GGNNCC | 4 cut(s) | 40, 426, 440, 754 |
| BspMAI | CTGCAG | 2 cut(s) | 373, 1246 |
| BspOI | GCTAGC | 1 cut(s) | 906 |
| BspPI | GGATC | 5 cut(s) | 53, 371, 490, 744, 1335 |
| BspQI | GCTCTTC | 1 cut(s) | 1002 |
| BspT104I | TTCGAA | 1 cut(s) | 156 |
| BspT107I | GGYRCC | 3 cut(s) | 38, 424, 752 |
| BsrDI | GCAATG | 3 cut(s) | 309, 507, 1250 |
| BsrFI | RCCGGY | 1 cut(s) | 1012 |
| BssAI | RCCGGY | 1 cut(s) | 1012 |
| BssECI | CCNNGG | 6 cut(s) | 428, 812, 871, 872, 892, 1428 |
| BssT1I | CCWWGG | 1 cut(s) | 428 |
| Bst2UI | CCWGG | 2 cut(s) | 632, 1429 |
| Bst4CI | ACNGT | 3 cut(s) | 418, 685, 1147 |
| Bst6I | CTCTTC | 9 cut(s) | 186, 237, 440, 1002, 1047, 1053, 1062, 1215, 1374 |
| BstBAI | YACGTR | 2 cut(s) | 470, 1272 |
| BstBI | TTCGAA | 1 cut(s) | 156 |
| BstC8I | GCNNGC | 1 cut(s) | 904 |
| BstDEI | CTNAG | 4 cut(s) | 43, 381, 1334, 1410 |
| BstDSI | CCRYGG | 1 cut(s) | 812 |
| BstEII | GGTNACC | 1 cut(s) | 911 |
| BstF5I | GGATG | 6 cut(s) | 28, 130, 367, 916, 1102, 1366 |
| BstFNI | CGCG | 1 cut(s) | 297 |
| BstHHI | GCGC | 1 cut(s) | 297 |
| BstMAI | GTCTC | 2 cut(s) | 8, 1293 |
| BstNI | CCWGG | 2 cut(s) | 632, 1429 |
| BstNSI | RCATGY | 2 cut(s) | 133, 793 |
| BstPI | GGTNACC | 1 cut(s) | 911 |
| BstSCI | CCNGG | 7 cut(s) | 630, 748, 870, 871, 892, 919, 1427 |
| BstSFI | CTRYAG | 4 cut(s) | 9, 369, 1110, 1242 |
| BstUI | CGCG | 1 cut(s) | 297 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| BstX2I | RGATCY | 2 cut(s) | 495, 1327 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 435, 923 |
| BstYI | RGATCY | 2 cut(s) | 495, 1327 |
| BsuRI | GGCC | 3 cut(s) | 340, 957, 1201 |
| BtgI | CCRYGG | 1 cut(s) | 812 |
| BtsCI | GGATG | 6 cut(s) | 28, 130, 367, 916, 1102, 1366 |
| BtsIMutI | CAGTG | 1 cut(s) | 728 |
| Cac8I | GCNNGC | 1 cut(s) | 904 |
| CciI | TCATGA | 2 cut(s) | 640, 1000 |
| CfoI | GCGC | 1 cut(s) | 297 |
| Cfr10I | RCCGGY | 1 cut(s) | 1012 |
| Cfr13I | GGNCC | 1 cut(s) | 839 |
| Cfr9I | CCCGGG | 1 cut(s) | 871 |
| CseI | GACGC | 1 cut(s) | 185 |
| CsiI | ACCWGGT | 1 cut(s) | 630 |
| Csp6I | GTAC | 7 cut(s) | 419, 544, 635, 697, 1148, 1207, 1214 |
| CviAII | CATG | 7 cut(s) | 130, 641, 757, 767, 790, 1001, 1474 |
| CviQI | GTAC | 7 cut(s) | 419, 544, 635, 697, 1148, 1207, 1214 |
| DdeI | CTNAG | 4 cut(s) | 43, 381, 1334, 1410 |
| DraIII | CACNNNGTG | 1 cut(s) | 473 |
| EaeI | YGGCCR | 1 cut(s) | 955 |
| Eam1104I | CTCTTC | 9 cut(s) | 186, 237, 440, 1002, 1047, 1053, 1062, 1215, 1374 |
| EarI | CTCTTC | 9 cut(s) | 186, 237, 440, 1002, 1047, 1053, 1062, 1215, 1374 |
| EciI | GGCGGA | 3 cut(s) | 798, 912, 1146 |
| Eco130I | CCWWGG | 1 cut(s) | 428 |
| Eco147I | AGGCCT | 2 cut(s) | 340, 1201 |
| Eco47I | GGWCC | 1 cut(s) | 839 |
| Eco57I | CTGAAG | 1 cut(s) | 1398 |
| Eco72I | CACGTG | 1 cut(s) | 470 |
| Eco88I | CYCGRG | 1 cut(s) | 871 |
| Eco91I | GGTNACC | 1 cut(s) | 911 |
| EcoO65I | GGTNACC | 1 cut(s) | 911 |
| EcoRII | CCWGG | 2 cut(s) | 630, 1427 |
| EcoT14I | CCWWGG | 1 cut(s) | 428 |
| ErhI | CCWWGG | 1 cut(s) | 428 |
| Esp3I | CGTCTC | 1 cut(s) | 1293 |
| FaeI | CATG | 7 cut(s) | 133, 644, 760, 770, 793, 1004, 1477 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 768, 800 |
| FaqI | GGGAC | 1 cut(s) | 1261 |
| FatI | CATG | 7 cut(s) | 129, 640, 756, 766, 789, 1000, 1473 |
| FauI | CCCGC | 1 cut(s) | 175 |
| FbaI | TGATCA | 2 cut(s) | 718, 1138 |
| FokI | GGATG | 6 cut(s) | 15, 137, 374, 903, 1109, 1373 |
| FspBI | CTAG | 2 cut(s) | 903, 1561 |
| GlaI | GCGC | 1 cut(s) | 296 |
| GsaI | CCCAGC | 1 cut(s) | 931 |
| HaeIII | GGCC | 3 cut(s) | 340, 957, 1201 |
| HapII | CCGG | 7 cut(s) | 409, 749, 872, 894, 920, 1013, 1457 |
| HgaI | GACGC | 1 cut(s) | 185 |
| HhaI | GCGC | 1 cut(s) | 297 |
| Hin1II | CATG | 7 cut(s) | 133, 644, 760, 770, 793, 1004, 1477 |
| Hin6I | GCGC | 1 cut(s) | 295 |
| HinP1I | GCGC | 1 cut(s) | 295 |
| HinfI | GANTC | 3 cut(s) | 230, 1106, 1366 |
| HpaII | CCGG | 7 cut(s) | 409, 749, 872, 894, 920, 1013, 1457 |
| HphI | GGTGA | 3 cut(s) | 701, 736, 1049 |
| Hpy166II | GTNNAC | 1 cut(s) | 49 |
| Hpy188III | TCNNGA | 5 cut(s) | 101, 224, 641, 1001, 1103 |
| Hpy8I | GTNNAC | 1 cut(s) | 49 |
| HpyAV | CCTTC | 2 cut(s) | 698, 1540 |
| HpyCH4III | ACNGT | 3 cut(s) | 418, 685, 1147 |
| HpyCH4IV | ACGT | 5 cut(s) | 345, 469, 621, 975, 1271 |
| HpyCH4V | TGCA | 9 cut(s) | 137, 335, 365, 371, 515, 598, 829, 1244, 1513 |
| HpyF3I | CTNAG | 4 cut(s) | 43, 381, 1334, 1410 |
| HpySE526I | ACGT | 5 cut(s) | 345, 469, 621, 975, 1271 |
| Hsp92II | CATG | 7 cut(s) | 133, 644, 760, 770, 793, 1004, 1477 |
| HspAI | GCGC | 1 cut(s) | 295 |
| Ksp22I | TGATCA | 2 cut(s) | 718, 1138 |
| LguI | GCTCTTC | 1 cut(s) | 1002 |
| LmnI | GCTCC | 5 cut(s) | 438, 889, 899, 1133, 1313 |
| LweI | GCATC | 6 cut(s) | 37, 352, 634, 667, 1434, 1500 |
| MabI | ACCWGGT | 1 cut(s) | 630 |
| MaeI | CTAG | 2 cut(s) | 903, 1561 |
| MaeII | ACGT | 5 cut(s) | 345, 469, 621, 975, 1271 |
| MaeIII | GTNAC | 6 cut(s) | 724, 762, 911, 1363, 1404, 1469 |
| MflI | RGATCY | 2 cut(s) | 495, 1327 |
| MluCI | AATT | 4 cut(s) | 87, 107, 235, 522 |
| MlyI | GAGTC | 2 cut(s) | 224, 1360 |
| MmeI | TCCRAC | 4 cut(s) | 559, 1023, 1365, 1557 |
| MroXI | GAANNNNTTC | 1 cut(s) | 96 |
| MseI | TTAA | 3 cut(s) | 119, 945, 1554 |
| MslI | CAYNNNNRTG | 5 cut(s) | 33, 824, 921, 1035, 1272 |
| MspA1I | CMGCKG | 2 cut(s) | 374, 1193 |
| MspI | CCGG | 7 cut(s) | 409, 749, 872, 894, 920, 1013, 1457 |
| MspR9I | CCNGG | 7 cut(s) | 632, 750, 872, 873, 894, 921, 1429 |
| Mva1269I | GAATGC | 2 cut(s) | 600, 886 |
| MvaI | CCWGG | 2 cut(s) | 632, 1429 |
| MvnI | CGCG | 1 cut(s) | 297 |
| NciI | CCSGG | 5 cut(s) | 750, 872, 873, 894, 921 |
| NheI | GCTAGC | 1 cut(s) | 902 |
| NlaIII | CATG | 7 cut(s) | 133, 644, 760, 770, 793, 1004, 1477 |
| NlaIV | GGNNCC | 4 cut(s) | 40, 426, 440, 754 |
| NmeAIII | GCCGAG | 1 cut(s) | 1322 |
| NmuCI | GTSAC | 4 cut(s) | 724, 762, 1363, 1469 |
| NspI | RCATGY | 2 cut(s) | 133, 793 |
| NspV | TTCGAA | 1 cut(s) | 156 |
| PagI | TCATGA | 2 cut(s) | 640, 1000 |
| PceI | AGGCCT | 2 cut(s) | 340, 1201 |
| PciSI | GCTCTTC | 1 cut(s) | 1002 |
| PctI | GAATGC | 2 cut(s) | 600, 886 |
| PdmI | GAANNNNTTC | 1 cut(s) | 96 |
| PfeI | GAWTC | 1 cut(s) | 1106 |
| PleI | GAGTC | 2 cut(s) | 224, 1360 |
| PmaCI | CACGTG | 1 cut(s) | 470 |
| PmlI | CACGTG | 1 cut(s) | 470 |
| PpsI | GAGTC | 2 cut(s) | 224, 1360 |
| Ppu21I | YACGTR | 2 cut(s) | 470, 1272 |
| Psp1406I | AACGTT | 1 cut(s) | 975 |
| Psp6I | CCWGG | 2 cut(s) | 630, 1427 |
| PspCI | CACGTG | 1 cut(s) | 470 |
| PspEI | GGTNACC | 1 cut(s) | 911 |
| PspFI | CCCAGC | 1 cut(s) | 927 |
| PspGI | CCWGG | 2 cut(s) | 630, 1427 |
| PspN4I | GGNNCC | 4 cut(s) | 40, 426, 440, 754 |
| PspPI | GGNCC | 1 cut(s) | 839 |
| PstI | CTGCAG | 2 cut(s) | 373, 1246 |
| PsuI | RGATCY | 2 cut(s) | 495, 1327 |
| PvuII | CAGCTG | 2 cut(s) | 374, 1193 |
| RsaI | GTAC | 7 cut(s) | 420, 545, 636, 698, 1149, 1208, 1215 |
| RsaNI | GTAC | 7 cut(s) | 419, 544, 635, 697, 1148, 1207, 1214 |
| RseI | CAYNNNNRTG | 5 cut(s) | 33, 824, 921, 1035, 1272 |
| SapI | GCTCTTC | 1 cut(s) | 1002 |
| SaqAI | TTAA | 3 cut(s) | 119, 945, 1554 |
| Sau96I | GGNCC | 1 cut(s) | 839 |
| ScaI | AGTACT | 1 cut(s) | 1215 |
| SchI | GAGTC | 2 cut(s) | 224, 1360 |
| ScrFI | CCNGG | 7 cut(s) | 632, 750, 872, 873, 894, 921, 1429 |
| SexAI | ACCWGGT | 1 cut(s) | 630 |
| SfaNI | GCATC | 6 cut(s) | 37, 352, 634, 667, 1434, 1500 |
| SfcI | CTRYAG | 4 cut(s) | 9, 369, 1110, 1242 |
| SfuI | TTCGAA | 1 cut(s) | 156 |
| SinI | GGWCC | 1 cut(s) | 839 |
| SmaI | CCCGGG | 1 cut(s) | 873 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 33, 824, 921, 1035, 1272 |
| SmlI | CTYRAG | 1 cut(s) | 222 |
| SmoI | CTYRAG | 1 cut(s) | 222 |
| Sse9I | AATT | 4 cut(s) | 87, 107, 235, 522 |
| SseBI | AGGCCT | 2 cut(s) | 340, 1201 |
| SsiI | CCGC | 7 cut(s) | 182, 314, 809, 897, 1131, 1168, 1481 |
| SspI | AATATT | 1 cut(s) | 153 |
| SspMI | CTAG | 2 cut(s) | 903, 1561 |
| StuI | AGGCCT | 2 cut(s) | 340, 1201 |
| StyD4I | CCNGG | 7 cut(s) | 630, 748, 870, 871, 892, 919, 1427 |
| StyI | CCWWGG | 1 cut(s) | 428 |
| TaaI | ACNGT | 3 cut(s) | 418, 685, 1147 |
| TaiI | ACGT | 5 cut(s) | 348, 472, 624, 978, 1274 |
| TaqI | TCGA | 2 cut(s) | 156, 1161 |
| TasI | AATT | 4 cut(s) | 87, 107, 235, 522 |
| TatI | WGTACW | 3 cut(s) | 418, 696, 1213 |
| TfiI | GAWTC | 1 cut(s) | 1106 |
| Tru1I | TTAA | 3 cut(s) | 119, 945, 1554 |
| Tru9I | TTAA | 3 cut(s) | 119, 945, 1554 |
| TscAI | CASTG | 1 cut(s) | 735 |
| TseFI | GTSAC | 4 cut(s) | 724, 762, 1363, 1469 |
| Tsp45I | GTSAC | 4 cut(s) | 724, 762, 1363, 1469 |
| TspDTI | ATGAA | 6 cut(s) | 320, 629, 758, 783, 963, 1040 |
| TspMI | CCCGGG | 1 cut(s) | 871 |
| TspRI | CASTG | 1 cut(s) | 735 |
| VpaK11BI | GGWCC | 1 cut(s) | 839 |
| XapI | RAATTY | 1 cut(s) | 235 |
| XceI | RCATGY | 2 cut(s) | 133, 793 |
| XmaI | CCCGGG | 1 cut(s) | 871 |
| XmnI | GAANNNNTTC | 1 cut(s) | 96 |
| XspI | CTAG | 2 cut(s) | 903, 1561 |
| ZrmI | AGTACT | 1 cut(s) | 1215 |