Rh2BG578600

Splicing factor 3B subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
79614898 .. 79616536
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG578600.1

Sequence Viewer

Length: 1563 bp
ATGACGACTACAGAGACACTCTGGCAGCATCCAAATGGTGCCTTAGTGAACAATGATGATCCTCCACAGCTTTTTAAGCAAGTTGAAATTGAATATGTTCCAGAGCAATTAGCAGAGTTAAACGATGGCATGTATGCAGACTTCAAACAAATATTCGAATACTTCACATTCAAGGACGCTGCGGGTGTTGAAGAGGAAAAGAAAGATGATGTCCATCACTCTCAAGAAGACTCAAATTCAGAAGAGGATAATCAACAAAAACAAGAAAAGGGCGTTTCAAACAAGAAGAAAAAGCGCGTGAAGATGAACATTGCGGAACTGAAACAGATGTGTGCAAGGCCTGATGTTGTTGAGGTGTGGGACGCAACTGCAGCTGATCCTAAGTTGCTGGTGTTTCTGAAATCATACCGGAACACAGTACGGGTGCCAAGGCATTGGAGCCAGAAGAGGAAATACTTACAGGGAACACGTGGTGTCAAAAAGCAACCTTTTCAGCTCCCTGATTACATTGCTGCTACCGGAATTGAGAAACTCCGACAGGCGTACAATGAGAAAGAAGATAACAAGAAGTTGAAGCAAAAGCAACGAGAAAGAATGCAGCCAAAGATGGGCAAGATGGACATTGATTACCAGGTACTTCATGATGCCTTCTTCAAGCATCAGGTAAAGCCAAAGCTCACAACAGTTGGTGATCTGTACTACGAAGGGAAAGAGTTTGATCAGGTGACACTGATGGATCAGATGAAGCCGGGTGCCATGTTGTCACATGAACTACAAGAAGCTCTTGGTATGTCAGAGGGTGCTCCTCCGCCGTGGCTCATTAGTATGCAGAGATATGGTCCTCCACCATCATATCCACATCTGAAAATCCCGGGGTTGAATGCTCCTATCCCCGGCGGAGCTAGCTTTGGTTACCATCCGGGTGGCTGGGGAAAGCCTCCTGTTAATGAATATGGCCGACCTTTGTATGGGAACGTTTTTGGTGTTGAGCAAACTAATCATGAGGAAGAGCCAGTTGAAAAGATGAAGCATTGGGGTGAGTTGGAGGAAGAAGAGGAAGAGAAAGAAGAGATTGAGAAAGAAAAAGATTTAGAGGATGATATGGAATCTGTAGATAGCTTTTCAAGTGGCGGAGCTGATCAGACAGTACCCGATGTGATCGAGCTGCGGAAGCAGCAGAGAAAAGAAACAGCTGAAAGGCCTTTGTACCAAGTACTTGAAGAGAAAGAAGAAAGAGTTGCTGCAGGGACATTGCTCGGAACAACTCACACGTATGTTGTTGGCAGCAACAGCAGCCGAGACGACAAGGCAGGAGCGAAAAGGGTGGATCTGCTCAGATGTCATAAAGCAGATAAAGTGGATGTGACTCTACAACCTGAAGAGTTGGAAGCTATGGAGAATGTGTTACCTGAGAAGTATCAACAAGCCAGGGAGGAGGAGAAGATGCGTAGTCAGCCGGAGGATTTTAGTGACATGGTTGCGGAGAACGAGAAGCACAGGAAGCGTAAGATGCAGGAAAAGGAAGCCAAATCCAACAAGAAGCAGAAGGATTTTAAGTTCTAG

Protein Analysis

520

Amino Acids

60.06

Weight (kDa)

5.49

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF382 PF04037 113 - 238 6e-59 Domain of unknown function (DUF382)
PSP PF04046 249 - 295 2.2e-20 PSP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 38, 424, 752
AccII CGCG 1 cut(s) 297
AciI CCGC 7 cut(s) 182, 314, 809, 897, 1131, 1168, 1481
AclI AACGTT 1 cut(s) 975
AclWI GGATC 4 cut(s) 53, 371, 744, 1335
AcoI YGGCCR 1 cut(s) 955
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 1398
AcvI CACGTG 1 cut(s) 470
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 7 cut(s) 420, 545, 636, 698, 1149, 1208, 1215
AfiI CCNNNNNNNGG 3 cut(s) 608, 893, 968
AflIII ACRYGT 2 cut(s) 467, 1269
AjnI CCWGG 2 cut(s) 630, 1427
AloI GAACNNNNNNTCC 1 cut(s) 1541
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 2 cut(s) 8, 1293
AlwI GGATC 4 cut(s) 53, 371, 744, 1335
Ama87I CYCGRG 1 cut(s) 871
AoxI GGCC 3 cut(s) 338, 955, 1199
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 839
AsuC2I CCSGG 5 cut(s) 750, 872, 873, 894, 921
AsuHPI GGTGA 3 cut(s) 701, 736, 1049
AsuII TTCGAA 1 cut(s) 156
AsuNHI GCTAGC 1 cut(s) 902
AvaI CYCGRG 1 cut(s) 871
AvaII GGWCC 1 cut(s) 839
BanI GGYRCC 3 cut(s) 38, 424, 752
BarI GAAGNNNNNNTAC 4 cut(s) 125, 157, 437, 469
BbrPI CACGTG 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 805
BccI CCATC 7 cut(s) 119, 222, 601, 610, 727, 856, 924
BceAI ACGGC 1 cut(s) 796
BciT130I CCWGG 2 cut(s) 632, 1429
BclI TGATCA 2 cut(s) 718, 1138
BcnI CCSGG 5 cut(s) 750, 872, 873, 894, 921
BcoDI GTCTC 2 cut(s) 8, 1293
BfaI CTAG 2 cut(s) 903, 1561
BfmI CTRYAG 4 cut(s) 9, 369, 1110, 1242
BmcAI AGTACT 1 cut(s) 1215
Bme1390I CCNGG 7 cut(s) 632, 750, 872, 873, 894, 921, 1429
Bme18I GGWCC 1 cut(s) 839
BmeT110I CYCGRG 1 cut(s) 871
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 4 cut(s) 40, 426, 440, 754
BmrFI CCNGG 7 cut(s) 632, 750, 872, 873, 894, 921, 1429
BmsI GCATC 5 cut(s) 37, 634, 667, 1434, 1500
BmtI GCTAGC 1 cut(s) 906
BpiI GAAGAC 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 207
BpuMI CCSGG 5 cut(s) 750, 872, 873, 894, 921
BsaAI YACGTR 2 cut(s) 470, 1272
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 6 cut(s) 428, 812, 871, 872, 892, 1428
BsaWI WCCGGW 2 cut(s) 408, 518
BsaXI ACNNNNNCTCC 2 cut(s) 1388, 1418
Bsc4I CCNNNNNNNGG 3 cut(s) 608, 893, 968
Bse1I ACTGG 1 cut(s) 1013
Bse3DI GCAATG 3 cut(s) 309, 507, 1250
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 632, 1429
BseDI CCNNGG 6 cut(s) 428, 812, 871, 872, 892, 1428
BseGI GGATG 4 cut(s) 28, 916, 1102, 1366
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 3 cut(s) 608, 893, 968
BseMI GCAATG 3 cut(s) 309, 507, 1250
BseMII CTCAG 2 cut(s) 1348, 1401
BseNI ACTGG 1 cut(s) 1013
BseRI GAGGAG 3 cut(s) 795, 1448, 1451
BseYI CCCAGC 1 cut(s) 927
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 3 cut(s) 340, 957, 1201
BshNI GGYRCC 3 cut(s) 38, 424, 752
BsiHKAI GWGCWC 1 cut(s) 805
BsiHKCI CYCGRG 1 cut(s) 871
BsiSI CCGG 7 cut(s) 409, 519, 749, 872, 894, 920, 1457
BslFI GGGAC 2 cut(s) 374, 1261
BslI CCNNNNNNNGG 3 cut(s) 608, 893, 968
BsmAI GTCTC 2 cut(s) 8, 1293
BsmBI CGTCTC 1 cut(s) 1293
BsmFI GGGAC 2 cut(s) 374, 1261
BsmI GAATGC 2 cut(s) 600, 886
BsnI GGCC 3 cut(s) 340, 957, 1201
BsoBI CYCGRG 1 cut(s) 871
Bsp119I TTCGAA 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 8 cut(s) 58, 376, 691, 718, 736, 1138, 1158, 1327
BspACI CCGC 7 cut(s) 182, 314, 809, 897, 1131, 1168, 1481
BspANI GGCC 3 cut(s) 340, 957, 1201
BspCNI CTCAG 2 cut(s) 1347, 1402
BspFNI CGCG 1 cut(s) 297
BspHI TCATGA 2 cut(s) 640, 1000
BspLI GGNNCC 4 cut(s) 40, 426, 440, 754
BspMAI CTGCAG 2 cut(s) 373, 1246
BspOI GCTAGC 1 cut(s) 906
BspPI GGATC 4 cut(s) 53, 371, 744, 1335
BspQI GCTCTTC 1 cut(s) 1002
BspT104I TTCGAA 1 cut(s) 156
BspT107I GGYRCC 3 cut(s) 38, 424, 752
BsrDI GCAATG 3 cut(s) 309, 507, 1250
BsrI ACTGG 1 cut(s) 1013
BssECI CCNNGG 6 cut(s) 428, 812, 871, 872, 892, 1428
BssMI GATC 8 cut(s) 58, 376, 691, 718, 736, 1138, 1158, 1327
BssT1I CCWWGG 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 632, 1429
Bst4CI ACNGT 3 cut(s) 418, 685, 1147
Bst6I CTCTTC 9 cut(s) 186, 237, 440, 1002, 1047, 1053, 1062, 1215, 1374
BstBAI YACGTR 2 cut(s) 470, 1272
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 904
BstDEI CTNAG 4 cut(s) 43, 381, 1334, 1410
BstDSI CCRYGG 1 cut(s) 812
BstEII GGTNACC 1 cut(s) 911
BstF5I GGATG 4 cut(s) 28, 916, 1102, 1366
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 8 cut(s) 61, 379, 694, 721, 739, 1141, 1161, 1330
BstMAI GTCTC 2 cut(s) 8, 1293
BstMBI GATC 8 cut(s) 58, 376, 691, 718, 736, 1138, 1158, 1327
BstNI CCWGG 2 cut(s) 632, 1429
BstNSI RCATGY 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 911
BstSCI CCNGG 7 cut(s) 630, 748, 870, 871, 892, 919, 1427
BstSFI CTRYAG 4 cut(s) 9, 369, 1110, 1242
BstUI CGCG 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 1327
BstXI CCANNNNNNTGG 2 cut(s) 435, 923
BstYI RGATCY 1 cut(s) 1327
BsuRI GGCC 3 cut(s) 340, 957, 1201
BtgI CCRYGG 1 cut(s) 812
BtsCI GGATG 4 cut(s) 28, 916, 1102, 1366
BtsIMutI CAGTG 1 cut(s) 728
Cac8I GCNNGC 1 cut(s) 904
CciI TCATGA 2 cut(s) 640, 1000
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 839
Cfr9I CCCGGG 1 cut(s) 871
CseI GACGC 2 cut(s) 185, 371
CsiI ACCWGGT 1 cut(s) 630
Csp6I GTAC 7 cut(s) 419, 544, 635, 697, 1148, 1207, 1214
CviAII CATG 6 cut(s) 130, 641, 757, 767, 1001, 1474
CviQI GTAC 7 cut(s) 419, 544, 635, 697, 1148, 1207, 1214
DdeI CTNAG 4 cut(s) 43, 381, 1334, 1410
DpnI GATC 8 cut(s) 60, 378, 693, 720, 738, 1140, 1160, 1329
DpnII GATC 8 cut(s) 58, 376, 691, 718, 736, 1138, 1158, 1327
DraIII CACNNNGTG 1 cut(s) 473
EaeI YGGCCR 1 cut(s) 955
Eam1104I CTCTTC 9 cut(s) 186, 237, 440, 1002, 1047, 1053, 1062, 1215, 1374
EarI CTCTTC 9 cut(s) 186, 237, 440, 1002, 1047, 1053, 1062, 1215, 1374
EciI GGCGGA 3 cut(s) 798, 912, 1146
Eco130I CCWWGG 1 cut(s) 428
Eco147I AGGCCT 2 cut(s) 340, 1201
Eco47I GGWCC 1 cut(s) 839
Eco57I CTGAAG 1 cut(s) 1398
Eco72I CACGTG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 871
Eco91I GGTNACC 1 cut(s) 911
EcoO65I GGTNACC 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 630, 1427
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
Esp3I CGTCTC 1 cut(s) 1293
FaeI CATG 6 cut(s) 133, 644, 760, 770, 1004, 1477
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FaqI GGGAC 2 cut(s) 374, 1261
FatI CATG 6 cut(s) 129, 640, 756, 766, 1000, 1473
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 2 cut(s) 718, 1138
FokI GGATG 4 cut(s) 15, 903, 1109, 1373
FspBI CTAG 2 cut(s) 903, 1561
GlaI GCGC 1 cut(s) 296
GsaI CCCAGC 1 cut(s) 931
HaeIII GGCC 3 cut(s) 340, 957, 1201
HapII CCGG 7 cut(s) 409, 519, 749, 872, 894, 920, 1457
HgaI GACGC 2 cut(s) 185, 371
HhaI GCGC 1 cut(s) 297
Hin1II CATG 6 cut(s) 133, 644, 760, 770, 1004, 1477
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 3 cut(s) 230, 1106, 1366
HpaII CCGG 7 cut(s) 409, 519, 749, 872, 894, 920, 1457
HphI GGTGA 3 cut(s) 701, 736, 1049
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 9 cut(s) 241, 399, 536, 741, 796, 864, 1143, 1259, 1337
Hpy188III TCNNGA 4 cut(s) 101, 224, 641, 1001
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 658, 698, 1540
HpyCH4III ACNGT 3 cut(s) 418, 685, 1147
HpyCH4IV ACGT 3 cut(s) 469, 975, 1271
HpyCH4V TGCA 7 cut(s) 137, 335, 371, 598, 829, 1244, 1513
HpyF3I CTNAG 4 cut(s) 43, 381, 1334, 1410
HpySE526I ACGT 3 cut(s) 469, 975, 1271
Hsp92II CATG 6 cut(s) 133, 644, 760, 770, 1004, 1477
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 2 cut(s) 718, 1138
Kzo9I GATC 8 cut(s) 58, 376, 691, 718, 736, 1138, 1158, 1327
LguI GCTCTTC 1 cut(s) 1002
LmnI GCTCC 7 cut(s) 438, 501, 808, 889, 899, 1133, 1313
LweI GCATC 5 cut(s) 37, 634, 667, 1434, 1500
MabI ACCWGGT 1 cut(s) 630
MaeI CTAG 2 cut(s) 903, 1561
MaeII ACGT 3 cut(s) 469, 975, 1271
MaeIII GTNAC 6 cut(s) 724, 762, 911, 1363, 1404, 1469
MalI GATC 8 cut(s) 60, 378, 693, 720, 738, 1140, 1160, 1329
MboI GATC 8 cut(s) 58, 376, 691, 718, 736, 1138, 1158, 1327
MflI RGATCY 1 cut(s) 1327
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 4 cut(s) 87, 107, 235, 522
MlyI GAGTC 2 cut(s) 224, 1360
MmeI TCCRAC 4 cut(s) 559, 1023, 1365, 1557
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 4 cut(s) 75, 119, 945, 1554
MslI CAYNNNNRTG 5 cut(s) 33, 824, 921, 1035, 1272
MspA1I CMGCKG 2 cut(s) 374, 1193
MspI CCGG 7 cut(s) 409, 519, 749, 872, 894, 920, 1457
MspR9I CCNGG 7 cut(s) 632, 750, 872, 873, 894, 921, 1429
Mva1269I GAATGC 2 cut(s) 600, 886
MvaI CCWGG 2 cut(s) 632, 1429
MvnI CGCG 1 cut(s) 297
NciI CCSGG 5 cut(s) 750, 872, 873, 894, 921
NdeII GATC 8 cut(s) 58, 376, 691, 718, 736, 1138, 1158, 1327
NheI GCTAGC 1 cut(s) 902
NlaIII CATG 6 cut(s) 133, 644, 760, 770, 1004, 1477
NlaIV GGNNCC 4 cut(s) 40, 426, 440, 754
NmeAIII GCCGAG 1 cut(s) 1322
NmuCI GTSAC 4 cut(s) 724, 762, 1363, 1469
NspI RCATGY 1 cut(s) 133
NspV TTCGAA 1 cut(s) 156
PagI TCATGA 2 cut(s) 640, 1000
PceI AGGCCT 2 cut(s) 340, 1201
PciSI GCTCTTC 1 cut(s) 1002
PctI GAATGC 2 cut(s) 600, 886
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 1106
PleI GAGTC 2 cut(s) 224, 1360
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
PpsI GAGTC 2 cut(s) 224, 1360
Ppu21I YACGTR 2 cut(s) 470, 1272
Psp1406I AACGTT 1 cut(s) 975
Psp6I CCWGG 2 cut(s) 630, 1427
PspCI CACGTG 1 cut(s) 470
PspEI GGTNACC 1 cut(s) 911
PspFI CCCAGC 1 cut(s) 927
PspGI CCWGG 2 cut(s) 630, 1427
PspN4I GGNNCC 4 cut(s) 40, 426, 440, 754
PspPI GGNCC 1 cut(s) 839
PstI CTGCAG 2 cut(s) 373, 1246
PsuI RGATCY 1 cut(s) 1327
PvuII CAGCTG 2 cut(s) 374, 1193
RsaI GTAC 7 cut(s) 420, 545, 636, 698, 1149, 1208, 1215
RsaNI GTAC 7 cut(s) 419, 544, 635, 697, 1148, 1207, 1214
RseI CAYNNNNRTG 5 cut(s) 33, 824, 921, 1035, 1272
SapI GCTCTTC 1 cut(s) 1002
SaqAI TTAA 4 cut(s) 75, 119, 945, 1554
Sau3AI GATC 8 cut(s) 58, 376, 691, 718, 736, 1138, 1158, 1327
Sau96I GGNCC 1 cut(s) 839
ScaI AGTACT 1 cut(s) 1215
SchI GAGTC 2 cut(s) 224, 1360
ScrFI CCNGG 7 cut(s) 632, 750, 872, 873, 894, 921, 1429
SduI GDGCHC 1 cut(s) 805
SexAI ACCWGGT 1 cut(s) 630
SfaNI GCATC 5 cut(s) 37, 634, 667, 1434, 1500
SfcI CTRYAG 4 cut(s) 9, 369, 1110, 1242
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 1 cut(s) 839
SmaI CCCGGG 1 cut(s) 873
SmiMI CAYNNNNRTG 5 cut(s) 33, 824, 921, 1035, 1272
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 4 cut(s) 87, 107, 235, 522
SseBI AGGCCT 2 cut(s) 340, 1201
SsiI CCGC 7 cut(s) 182, 314, 809, 897, 1131, 1168, 1481
SspI AATATT 1 cut(s) 153
SspMI CTAG 2 cut(s) 903, 1561
StuI AGGCCT 2 cut(s) 340, 1201
StyD4I CCNGG 7 cut(s) 630, 748, 870, 871, 892, 919, 1427
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 3 cut(s) 418, 685, 1147
TaiI ACGT 3 cut(s) 472, 978, 1274
TaqI TCGA 2 cut(s) 156, 1161
TasI AATT 4 cut(s) 87, 107, 235, 522
TatI WGTACW 2 cut(s) 696, 1213
TfiI GAWTC 1 cut(s) 1106
Tru1I TTAA 4 cut(s) 75, 119, 945, 1554
Tru9I TTAA 4 cut(s) 75, 119, 945, 1554
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 4 cut(s) 724, 762, 1363, 1469
Tsp45I GTSAC 4 cut(s) 724, 762, 1363, 1469
TspDTI ATGAA 6 cut(s) 320, 629, 758, 783, 963, 1040
TspMI CCCGGG 1 cut(s) 871
TspRI CASTG 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 1 cut(s) 235
XceI RCATGY 1 cut(s) 133
XmaI CCCGGG 1 cut(s) 871
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 2 cut(s) 903, 1561
ZrmI AGTACT 1 cut(s) 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.