Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004036

Physical Location & Seq

Genomic Coordinates Forward (+)

72851802 .. 72852649

Gene Structure 848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG548500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTGTCACATGAACTAAAAGAAGCTCTTGGCATGTCAGAGGGTGTTCCTCCGCCGTGGCTCATTAGTATGCAGAGAAATGGTCCTCCACCATCATATCCACATCTGAAAATCCCGGGGTTGAATGCTCCTATCCCCGGCGGAGCTAGCTTTGGTTACCATCCGGGTGGCTGGGGAAAGCCTCCTGTTAATGAATATGGCCGACCTTTGTATGGGAACGTTTTTGGTGTTGAGCAACCTAATCATGAGGAAGAGCCGGTTGAAAAGATGAAGCATTGGGGTGAGTTGGAGGAAGAAGAGGAAGAGAAAGAAGAGATTGAGAAAGAAAAAGATTTAGAGGATGATCTGGAATCTGTAGATAGCTTTTCAAGTGGCGGAGCTGATCAGACAGTACCCGATGTGATCGAGCTGCGGAAGCAGCAGGGAAAAGAAACAGCTGAAAGGCCTTTGTACCAAGTACTTGAAGAGAAAGAAGAAAGAGTTGCTGCAGGGACATTGCTCGGAACAACTCACACGTATGTTGTTGGCAGCAACAGCAGCCGAGACGACAAGGCAGGAGCGAAAAGGGTGGATCTGCTCAGATGTCATAAAGCAGATAAAGTGGATGTGACTCTACAACCTGAAGAGTTGGAAGCTATGGAGAATGTGTTACCTGAGAAGTATCAACAAGCCAGGGAGGAGGAGAAGATGCGTAGTCAGCCGGAGGATTTTAGTGACATGGTTGCGGAGAACGAGAAGCAGAGGAAGCGTAAGATGCAGGAAAAGGAAGCCAAATCCAACAAGAAGCAGAAGGATTTTAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

268

Amino Acids

30.41

Weight (kDa)

4.95

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSP	PF04046	2 - 43	2.4e-19	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11520 AT4G21660 AT4G21660 AT4G21660
fragaria_vesca	FvH4_3g04740 FvH4_6g45300
malus_domestica	MD05G1318200.v1.1 MD10G1297600.v1.1
prunus_persica	Prupe.4G042600_v2.0.a1 Prupe.4G042600_v2.0.a1
pyrus_communis	pycom05g29460 pycom10g25110
rosa_chinensis	RchiOBHm_Chr2g0163041 RchiOBHm_Chr5g0007761
rosa_laevigata	RLG00000021367 RLG00000031486
rosa_multiflora	Rmu_co8286435.1_g000001 Rmu_co8351911.1_g000001 Rmu_sc0005098.1_g000019 Rmu_sc0007039.1_g000007
rosa_roxburghii	Rroxscaffold_1G00068650 Rroxscaffold_2G00087600
rosa_rugosa	Rorug02G0500000.1 Rorug04G0430100
rosa_samantha	Rh2AG566300 Rh2BG578600 Rh2CG548500 Rh5AG058500 Rh5BG055300 Rh5CG065100 Rh5DG054300
rosa_wichuraiana	Rw2G046870 Rw5G006120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	53, 141, 375, 412, 725
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	1 cut(s)	579
AcoI	YGGCCR	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	3 cut(s)	393, 452, 459
AfiI	CCNNNNNNNGG	2 cut(s)	137, 212
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	4 cut(s)	124, 263, 369, 464
AjnI	CCWGG	1 cut(s)	671
AloI	GAACNNNNNNTCC	1 cut(s)	785
AluBI	AGCT	8 cut(s)	26, 146, 150, 363, 380, 409, 437, 635
AluI	AGCT	8 cut(s)	26, 146, 150, 363, 380, 409, 437, 635
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	199, 443
ApeKI	GCWGC	5 cut(s)	409, 418, 485, 528, 537
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	4 cut(s)	116, 117, 138, 165
AsuHPI	GGTGA	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	83
BbvI	GCAGC	5 cut(s)	396, 430, 472, 540, 549
BccI	CCATC	2 cut(s)	100, 168
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	673
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	4 cut(s)	116, 117, 138, 165
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	2 cut(s)	147, 805
BfmI	CTRYAG	2 cut(s)	354, 486
BisI	GCNGC	5 cut(s)	410, 419, 486, 529, 538
BlsI	GCNGC	5 cut(s)	411, 420, 487, 530, 539
BmcAI	AGTACT	1 cut(s)	459
Bme1390I	CCNGG	5 cut(s)	116, 117, 138, 165, 673
Bme18I	GGWCC	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	83
BmrFI	CCNGG	5 cut(s)	116, 117, 138, 165, 673
BmsI	GCATC	2 cut(s)	678, 744
BmtI	GCTAGC	1 cut(s)	150
BpuMI	CCSGG	4 cut(s)	116, 117, 138, 165
BsaAI	YACGTR	1 cut(s)	516
BsaJI	CCNNGG	5 cut(s)	56, 115, 116, 136, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	632, 662
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 212
Bse118I	RCCGGY	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	673
BseDI	CCNNGG	5 cut(s)	56, 115, 116, 136, 672
BseGI	GGATG	3 cut(s)	160, 346, 610
BseLI	CCNNNNNNNGG	2 cut(s)	137, 212
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	2 cut(s)	592, 645
BseRI	GAGGAG	2 cut(s)	692, 695
BseXI	GCAGC	5 cut(s)	396, 430, 472, 540, 549
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	2 cut(s)	201, 445
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	5 cut(s)	116, 138, 164, 257, 701
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	2 cut(s)	137, 212
BsmAI	GTCTC	1 cut(s)	537
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	201, 445
BsoBI	CYCGRG	1 cut(s)	115
Bsp143I	GATC	4 cut(s)	343, 382, 402, 571
BspACI	CCGC	5 cut(s)	53, 141, 375, 412, 725
BspANI	GGCC	2 cut(s)	201, 445
BspCNI	CTCAG	2 cut(s)	591, 646
BspHI	TCATGA	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	490
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	579
BspQI	GCTCTTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	5 cut(s)	56, 115, 116, 136, 672
BssMI	GATC	4 cut(s)	343, 382, 402, 571
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	6 cut(s)	246, 291, 297, 306, 459, 618
BstBAI	YACGTR	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	578, 654
BstDSI	CCRYGG	1 cut(s)	56
BstEII	GGTNACC	1 cut(s)	155
BstF5I	GGATG	3 cut(s)	160, 346, 610
BstKTI	GATC	4 cut(s)	346, 385, 405, 574
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	4 cut(s)	343, 382, 402, 571
BstMWI	GCNNNNNNNGC	8 cut(s)	147, 415, 418, 534, 537, 697, 745, 754
BstNI	CCWGG	1 cut(s)	673
BstNSI	RCATGY	1 cut(s)	37
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	5 cut(s)	114, 115, 136, 163, 671
BstSFI	CTRYAG	2 cut(s)	354, 486
BstV1I	GCAGC	5 cut(s)	396, 430, 472, 540, 549
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	201, 445
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	160, 346, 610
Cac8I	GCNNGC	1 cut(s)	148
CciI	TCATGA	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	83
Cfr9I	CCCGGG	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	392, 451, 458
CviAII	CATG	4 cut(s)	11, 34, 245, 718
CviQI	GTAC	3 cut(s)	392, 451, 458
DdeI	CTNAG	2 cut(s)	578, 654
DpnI	GATC	4 cut(s)	345, 384, 404, 573
DpnII	GATC	4 cut(s)	343, 382, 402, 571
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	6 cut(s)	246, 291, 297, 306, 459, 618
EarI	CTCTTC	6 cut(s)	246, 291, 297, 306, 459, 618
EciI	GGCGGA	3 cut(s)	42, 156, 390
Eco147I	AGGCCT	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	115
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	671
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	4 cut(s)	14, 37, 248, 721
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	4 cut(s)	10, 33, 244, 717
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	5 cut(s)	410, 419, 486, 529, 538
FokI	GGATG	3 cut(s)	147, 353, 617
Fsp4HI	GCNGC	5 cut(s)	410, 419, 486, 529, 538
FspBI	CTAG	2 cut(s)	147, 805
GluI	GCNGC	5 cut(s)	410, 419, 486, 529, 538
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	201, 445
HapII	CCGG	5 cut(s)	116, 138, 164, 257, 701
Hin1II	CATG	4 cut(s)	14, 37, 248, 721
HinfI	GANTC	2 cut(s)	350, 610
HpaII	CCGG	5 cut(s)	116, 138, 164, 257, 701
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	5 cut(s)	40, 108, 387, 503, 581
Hpy188III	TCNNGA	2 cut(s)	245, 347
HpyAV	CCTTC	1 cut(s)	784
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	219, 515
HpyCH4V	TGCA	3 cut(s)	73, 488, 757
HpyF10VI	GCNNNNNNNGC	8 cut(s)	147, 415, 418, 534, 537, 697, 745, 754
HpyF3I	CTNAG	2 cut(s)	578, 654
HpySE526I	ACGT	2 cut(s)	219, 515
Hsp92II	CATG	4 cut(s)	14, 37, 248, 721
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	343, 382, 402, 571
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	4 cut(s)	133, 143, 377, 557
Lsp1109I	GCAGC	5 cut(s)	396, 430, 472, 540, 549
LweI	GCATC	2 cut(s)	678, 744
MaeI	CTAG	2 cut(s)	147, 805
MaeII	ACGT	2 cut(s)	219, 515
MaeIII	GTNAC	5 cut(s)	6, 155, 607, 648, 713
MalI	GATC	4 cut(s)	345, 384, 404, 573
MboI	GATC	4 cut(s)	343, 382, 402, 571
MboII	GAAGA	9 cut(s)	263, 305, 308, 314, 323, 476, 485, 635, 697
MflI	RGATCY	1 cut(s)	571
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	3 cut(s)	267, 609, 801
MseI	TTAA	2 cut(s)	189, 798
MslI	CAYNNNNRTG	4 cut(s)	68, 165, 279, 516
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	5 cut(s)	116, 138, 164, 257, 701
MspR9I	CCNGG	5 cut(s)	116, 117, 138, 165, 673
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	8 cut(s)	147, 415, 418, 534, 537, 697, 745, 754
NciI	CCSGG	4 cut(s)	116, 117, 138, 165
NdeII	GATC	4 cut(s)	343, 382, 402, 571
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	4 cut(s)	14, 37, 248, 721
NmeAIII	GCCGAG	1 cut(s)	566
NmuCI	GTSAC	3 cut(s)	6, 607, 713
NspI	RCATGY	1 cut(s)	37
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	445
PciSI	GCTCTTC	1 cut(s)	246
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	411, 420, 487, 530, 539
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
Ppu21I	YACGTR	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	671
PspEI	GGTNACC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	671
PspPI	GGNCC	1 cut(s)	83
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	571
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	3 cut(s)	393, 452, 459
RsaNI	GTAC	3 cut(s)	392, 451, 458
RseI	CAYNNNNRTG	4 cut(s)	68, 165, 279, 516
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	189, 798
SatI	GCNGC	5 cut(s)	410, 419, 486, 529, 538
Sau3AI	GATC	4 cut(s)	343, 382, 402, 571
Sau96I	GGNCC	1 cut(s)	83
ScaI	AGTACT	1 cut(s)	459
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	5 cut(s)	116, 117, 138, 165, 673
SfaNI	GCATC	2 cut(s)	678, 744
SfcI	CTRYAG	2 cut(s)	354, 486
SinI	GGWCC	1 cut(s)	83
SmaI	CCCGGG	1 cut(s)	117
SmiMI	CAYNNNNRTG	4 cut(s)	68, 165, 279, 516
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	5 cut(s)	53, 141, 375, 412, 725
SspMI	CTAG	2 cut(s)	147, 805
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	5 cut(s)	114, 115, 136, 163, 671
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	222, 518
TaqI	TCGA	1 cut(s)	405
TatI	WGTACW	1 cut(s)	457
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	189, 798
Tru9I	TTAA	2 cut(s)	189, 798
TseFI	GTSAC	3 cut(s)	6, 607, 713
TseI	GCWGC	5 cut(s)	409, 418, 485, 528, 537
Tsp45I	GTSAC	3 cut(s)	6, 607, 713
TspDTI	ATGAA	3 cut(s)	27, 207, 284
TspMI	CCCGGG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	83
XceI	RCATGY	1 cut(s)	37
XmaI	CCCGGG	1 cut(s)	115
XspI	CTAG	2 cut(s)	147, 805
ZrmI	AGTACT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.