Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004036

Physical Location & Seq

Genomic Coordinates Forward (+)

74587968 .. 74589522

Gene Structure 1555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGACGACTACAGAGACACTCTGGCAGCATCCAAATGGTGCCTTAGTGAACAATGATGATCCTCCACAGCTTTTTGAGCAAGTTGAAATTGAATATGTTCCAGAGCAATTAGTCGAGTTAAACGATGGCATGTATGCAAATTTCAAACAAATATTCAAATACTTCACATTCAAGGACGCTGTGGGTGTTGAAGAGGGAAAGAAAGATGATGTCCATCACTCTCAAGAAGACTCAAATTCAGAAGAGGATAATCAACAAAAACAAGAAAATAGCGTTTCAAACAAGAAGAAAAAGCGCGTGAAGATGAACATTGCGGAACTGAAACAGATGTGTGCAAGGCCTGATGTTGTTGAGGTGTGGGACATAACTGCAGCTGATCCTAAGTTGCTGCTCCCTGATTACATTGCTGCAACCGGAATTGAGAAACTCCGACAGGCGTACAATGAGAAAGAAGATAACAAGAAGTTGAAGCAAAAGCAACGAGAAAAAATGCAGCCAAAGACAGGCAAGATGGACATTGATTACCAGGTACTTCATGATGCCTTTTTCAAGCATCAGGTAAATCCAAAGCTCACAACAGTTGGTAATCTGTACTACGAAGGGAAAGAGTTTGATCAGGTGACACTAATGGATCAGATGAAGCCGAGTGCCATGTTGTCACATGAACTAAAAGAAGCTCTTGGTATGTCAGAGGGTGCTCCTCCGCCGTGGCTCATTAGTATGCAGAGATATGGTCCTCCACCATCATATCCACATCTGAAAATTCCGGGGTTGAATGCTCCTATCCCCGGCGGAGCTAGCTTTGGTTACCATCCGGGTGGTTGGGGAAAGCCTCCTGTTAATGAATATGGCCGACCTTTGTATGGGAACATTTTTGGTATTAAGCAACCGAATCATGAGGAAGAGCCGGTTGAAAAGATGAAGCTTTGGGATAGCTTGTCAAGTGGCGAAGCTGATCAGGCAGTACCCGATGTGATCGAGCTGCGGAAGCAGCAGAGAAAAGAAACAACTGAAAGGCCTTTGTACCAAGTACTTGAAGAGAAAGAAGAAAGAGTTGCTGCAGGGACATTGCTCGGAACAACTCACACGTATGTTGTTGGCAGCAACTGCAGCCGAGACGACAAGGCAGGAGCGAAGAGGGTGGATCTGCTCAGAGGTCATAAAGCAGATAAAGTGGATGTGACTCTACAACCTGAAGAGTTGGAAGCTATGGAGAATGTGTTACCTGAGAAGTATCAACAAGCCAGGGAGAATGAGAAGATGCGTAGTCAGCCGGAGGATTTTAGTGACATGGTTGCGGAGAACGAGAAGCAGAGGAAGCGTAAGATGCAGGAAAAGGAAGCCAAATCCAACAAGAAGCAGGAGGATTTTAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

460

Amino Acids

52.62

Weight (kDa)

5.58

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	131 - 203	6.7e-29	Domain of unknown function (DUF382)
PSP	PF04046	219 - 260	1.5e-20	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11520 AT4G21660 AT4G21660 AT4G21660
fragaria_vesca	FvH4_3g04740 FvH4_6g45300
malus_domestica	MD05G1318200.v1.1 MD10G1297600.v1.1
prunus_persica	Prupe.4G042600_v2.0.a1 Prupe.4G042600_v2.0.a1
pyrus_communis	pycom05g29460 pycom10g25110
rosa_chinensis	RchiOBHm_Chr2g0163041 RchiOBHm_Chr5g0007761
rosa_laevigata	RLG00000021367 RLG00000031486
rosa_multiflora	Rmu_co8286435.1_g000001 Rmu_co8351911.1_g000001 Rmu_sc0005098.1_g000019 Rmu_sc0007039.1_g000007
rosa_roxburghii	Rroxscaffold_1G00068650 Rroxscaffold_2G00087600
rosa_rugosa	Rorug02G0500000.1 Rorug04G0430100
rosa_samantha	Rh2AG566300 Rh2BG578600 Rh2CG548500 Rh5AG058500 Rh5BG055300 Rh5CG065100 Rh5DG054300
rosa_wichuraiana	Rw2G046870 Rw5G006120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccII	CGCG	1 cut(s)	297
AciI	CCGC	5 cut(s)	314, 704, 792, 985, 1298
AclWI	GGATC	4 cut(s)	53, 371, 639, 1152
AcoI	YGGCCR	1 cut(s)	850
AcsI	RAATTY	3 cut(s)	139, 235, 762
AcuI	CTGAAG	1 cut(s)	1215
AfaI	GTAC	6 cut(s)	440, 531, 593, 966, 1025, 1032
AfiI	CCNNNNNNNGG	3 cut(s)	503, 788, 863
AflIII	ACRYGT	1 cut(s)	1086
AjnI	CCWGG	2 cut(s)	525, 1244
AloI	GAACNNNNNNTCC	1 cut(s)	1358
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	2 cut(s)	8, 1110
AlwI	GGATC	4 cut(s)	53, 371, 639, 1152
AlwNI	CAGNNNCTG	1 cut(s)	1107
AoxI	GGCC	3 cut(s)	338, 850, 1016
ApoI	RAATTY	3 cut(s)	139, 235, 762
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	734
AsuC2I	CCSGG	3 cut(s)	768, 789, 816
AsuHPI	GGTGA	1 cut(s)	631
AsuNHI	GCTAGC	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	734
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	700
BccI	CCATC	5 cut(s)	119, 222, 505, 751, 819
BceAI	ACGGC	1 cut(s)	691
BciT130I	CCWGG	2 cut(s)	527, 1246
BclI	TGATCA	2 cut(s)	613, 955
BcnI	CCSGG	3 cut(s)	768, 789, 816
BcoDI	GTCTC	2 cut(s)	8, 1110
BfaI	CTAG	2 cut(s)	798, 1378
BfmI	CTRYAG	4 cut(s)	9, 369, 1059, 1108
BmcAI	AGTACT	1 cut(s)	1032
Bme1390I	CCNGG	5 cut(s)	527, 768, 789, 816, 1246
Bme18I	GGWCC	1 cut(s)	734
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	5 cut(s)	527, 768, 789, 816, 1246
BmsI	GCATC	5 cut(s)	37, 529, 562, 1251, 1317
BmtI	GCTAGC	1 cut(s)	801
BpiI	GAAGAC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	207
BpuMI	CCSGG	3 cut(s)	768, 789, 816
BsaAI	YACGTR	1 cut(s)	1089
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	707, 767, 787, 1245
BsaWI	WCCGGW	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	1205, 1235
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 788, 863
Bse118I	RCCGGY	1 cut(s)	907
Bse3DI	GCAATG	3 cut(s)	309, 402, 1067
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	527, 1246
BseDI	CCNNGG	4 cut(s)	707, 767, 787, 1245
BseGI	GGATG	3 cut(s)	28, 811, 1183
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	3 cut(s)	503, 788, 863
BseMI	GCAATG	3 cut(s)	309, 402, 1067
BseMII	CTCAG	2 cut(s)	1165, 1218
BseRI	GAGGAG	1 cut(s)	690
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	3 cut(s)	340, 852, 1018
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	6 cut(s)	414, 767, 789, 815, 908, 1274
BslFI	GGGAC	2 cut(s)	374, 1078
BslI	CCNNNNNNNGG	3 cut(s)	503, 788, 863
BsmAI	GTCTC	2 cut(s)	8, 1110
BsmBI	CGTCTC	1 cut(s)	1110
BsmFI	GGGAC	2 cut(s)	374, 1078
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	3 cut(s)	340, 852, 1018
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	7 cut(s)	58, 376, 613, 631, 955, 975, 1144
BspACI	CCGC	5 cut(s)	314, 704, 792, 985, 1298
BspANI	GGCC	3 cut(s)	340, 852, 1018
BspCNI	CTCAG	2 cut(s)	1164, 1219
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	2 cut(s)	535, 895
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	3 cut(s)	373, 1063, 1112
BspOI	GCTAGC	1 cut(s)	801
BspPI	GGATC	4 cut(s)	53, 371, 639, 1152
BspQI	GCTCTTC	1 cut(s)	897
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	3 cut(s)	309, 402, 1067
BsrFI	RCCGGY	1 cut(s)	907
BssAI	RCCGGY	1 cut(s)	907
BssECI	CCNNGG	4 cut(s)	707, 767, 787, 1245
BssMI	GATC	7 cut(s)	58, 376, 613, 631, 955, 975, 1144
Bst2UI	CCWGG	2 cut(s)	527, 1246
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	6 cut(s)	186, 237, 897, 1032, 1130, 1191
BstAPI	GCANNNNNTGC	1 cut(s)	1107
BstBAI	YACGTR	1 cut(s)	1089
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	4 cut(s)	43, 381, 1151, 1227
BstDSI	CCRYGG	1 cut(s)	707
BstEII	GGTNACC	1 cut(s)	806
BstF5I	GGATG	3 cut(s)	28, 811, 1183
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	7 cut(s)	61, 379, 616, 634, 958, 978, 1147
BstMAI	GTCTC	2 cut(s)	8, 1110
BstMBI	GATC	7 cut(s)	58, 376, 613, 631, 955, 975, 1144
BstNI	CCWGG	2 cut(s)	527, 1246
BstNSI	RCATGY	1 cut(s)	133
BstPI	GGTNACC	1 cut(s)	806
BstSCI	CCNGG	5 cut(s)	525, 766, 787, 814, 1244
BstSFI	CTRYAG	4 cut(s)	9, 369, 1059, 1108
BstUI	CGCG	1 cut(s)	297
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	1144
BstXI	CCANNNNNNTGG	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	1144
BsuRI	GGCC	3 cut(s)	340, 852, 1018
BtgI	CCRYGG	1 cut(s)	707
BtsCI	GGATG	3 cut(s)	28, 811, 1183
Cac8I	GCNNGC	1 cut(s)	799
CaiI	CAGNNNCTG	1 cut(s)	1107
CciI	TCATGA	2 cut(s)	535, 895
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	907
Cfr13I	GGNCC	1 cut(s)	734
CseI	GACGC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	525
Csp6I	GTAC	6 cut(s)	439, 530, 592, 965, 1024, 1031
CviAII	CATG	6 cut(s)	130, 536, 652, 662, 896, 1291
CviQI	GTAC	6 cut(s)	439, 530, 592, 965, 1024, 1031
DdeI	CTNAG	4 cut(s)	43, 381, 1151, 1227
DpnI	GATC	7 cut(s)	60, 378, 615, 633, 957, 977, 1146
DpnII	GATC	7 cut(s)	58, 376, 613, 631, 955, 975, 1144
EaeI	YGGCCR	1 cut(s)	850
Eam1104I	CTCTTC	6 cut(s)	186, 237, 897, 1032, 1130, 1191
EarI	CTCTTC	6 cut(s)	186, 237, 897, 1032, 1130, 1191
EciI	GGCGGA	2 cut(s)	693, 807
Eco147I	AGGCCT	2 cut(s)	340, 1018
Eco47I	GGWCC	1 cut(s)	734
Eco57I	CTGAAG	1 cut(s)	1215
Eco91I	GGTNACC	1 cut(s)	806
EcoO65I	GGTNACC	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	525, 1244
Esp3I	CGTCTC	1 cut(s)	1110
FaeI	CATG	6 cut(s)	133, 539, 655, 665, 899, 1294
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	2 cut(s)	374, 1078
FatI	CATG	6 cut(s)	129, 535, 651, 661, 895, 1290
FbaI	TGATCA	2 cut(s)	613, 955
FokI	GGATG	3 cut(s)	15, 798, 1190
FspBI	CTAG	2 cut(s)	798, 1378
GlaI	GCGC	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	340, 852, 1018
HapII	CCGG	6 cut(s)	414, 767, 789, 815, 908, 1274
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	6 cut(s)	133, 539, 655, 665, 899, 1294
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	3 cut(s)	230, 892, 1183
HpaII	CCGG	6 cut(s)	414, 767, 789, 815, 908, 1274
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	7 cut(s)	241, 431, 636, 691, 759, 1076, 1154
Hpy188III	TCNNGA	4 cut(s)	101, 224, 536, 896
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	593
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	1 cut(s)	1088
HpyCH4V	TGCA	9 cut(s)	137, 335, 371, 410, 493, 724, 1061, 1110, 1330
HpyF3I	CTNAG	4 cut(s)	43, 381, 1151, 1227
HpySE526I	ACGT	1 cut(s)	1088
Hsp92II	CATG	6 cut(s)	133, 539, 655, 665, 899, 1294
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	2 cut(s)	613, 955
Kzo9I	GATC	7 cut(s)	58, 376, 613, 631, 955, 975, 1144
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	5 cut(s)	396, 703, 784, 794, 1130
LweI	GCATC	5 cut(s)	37, 529, 562, 1251, 1317
MabI	ACCWGGT	1 cut(s)	525
MaeI	CTAG	2 cut(s)	798, 1378
MaeII	ACGT	1 cut(s)	1088
MaeIII	GTNAC	6 cut(s)	619, 657, 806, 1180, 1221, 1286
MalI	GATC	7 cut(s)	60, 378, 615, 633, 957, 977, 1146
MboI	GATC	7 cut(s)	58, 376, 613, 631, 955, 975, 1144
MflI	RGATCY	1 cut(s)	1144
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	6 cut(s)	87, 107, 139, 235, 417, 762
MlyI	GAGTC	2 cut(s)	224, 1177
MmeI	TCCRAC	3 cut(s)	454, 1182, 1374
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	4 cut(s)	119, 840, 882, 1371
MslI	CAYNNNNRTG	4 cut(s)	33, 719, 816, 1089
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	6 cut(s)	414, 767, 789, 815, 908, 1274
MspR9I	CCNGG	5 cut(s)	527, 768, 789, 816, 1246
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	2 cut(s)	527, 1246
MvnI	CGCG	1 cut(s)	297
NciI	CCSGG	3 cut(s)	768, 789, 816
NdeII	GATC	7 cut(s)	58, 376, 613, 631, 955, 975, 1144
NheI	GCTAGC	1 cut(s)	797
NlaIII	CATG	6 cut(s)	133, 539, 655, 665, 899, 1294
NlaIV	GGNNCC	1 cut(s)	40
NmeAIII	GCCGAG	2 cut(s)	669, 1139
NmuCI	GTSAC	4 cut(s)	619, 657, 1180, 1286
NspI	RCATGY	1 cut(s)	133
PagI	TCATGA	2 cut(s)	535, 895
PceI	AGGCCT	2 cut(s)	340, 1018
PciSI	GCTCTTC	1 cut(s)	897
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	892
PleI	GAGTC	2 cut(s)	224, 1177
PpsI	GAGTC	2 cut(s)	224, 1177
Ppu21I	YACGTR	1 cut(s)	1089
Psp6I	CCWGG	2 cut(s)	525, 1244
PspEI	GGTNACC	1 cut(s)	806
PspGI	CCWGG	2 cut(s)	525, 1244
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	734
PstI	CTGCAG	3 cut(s)	373, 1063, 1112
PstNI	CAGNNNCTG	1 cut(s)	1107
PsuI	RGATCY	1 cut(s)	1144
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	6 cut(s)	440, 531, 593, 966, 1025, 1032
RsaNI	GTAC	6 cut(s)	439, 530, 592, 965, 1024, 1031
RseI	CAYNNNNRTG	4 cut(s)	33, 719, 816, 1089
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	4 cut(s)	119, 840, 882, 1371
Sau3AI	GATC	7 cut(s)	58, 376, 613, 631, 955, 975, 1144
Sau96I	GGNCC	1 cut(s)	734
ScaI	AGTACT	1 cut(s)	1032
SchI	GAGTC	2 cut(s)	224, 1177
ScrFI	CCNGG	5 cut(s)	527, 768, 789, 816, 1246
SduI	GDGCHC	1 cut(s)	700
SexAI	ACCWGGT	1 cut(s)	525
SfaNI	GCATC	5 cut(s)	37, 529, 562, 1251, 1317
SfcI	CTRYAG	4 cut(s)	9, 369, 1059, 1108
SinI	GGWCC	1 cut(s)	734
SmiMI	CAYNNNNRTG	4 cut(s)	33, 719, 816, 1089
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	6 cut(s)	87, 107, 139, 235, 417, 762
SseBI	AGGCCT	2 cut(s)	340, 1018
SsiI	CCGC	5 cut(s)	314, 704, 792, 985, 1298
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	2 cut(s)	798, 1378
StuI	AGGCCT	2 cut(s)	340, 1018
StyD4I	CCNGG	5 cut(s)	525, 766, 787, 814, 1244
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	1 cut(s)	1091
TaqI	TCGA	2 cut(s)	114, 978
TasI	AATT	6 cut(s)	87, 107, 139, 235, 417, 762
TatI	WGTACW	2 cut(s)	591, 1030
TfiI	GAWTC	1 cut(s)	892
Tru1I	TTAA	4 cut(s)	119, 840, 882, 1371
Tru9I	TTAA	4 cut(s)	119, 840, 882, 1371
TseFI	GTSAC	4 cut(s)	619, 657, 1180, 1286
Tsp45I	GTSAC	4 cut(s)	619, 657, 1180, 1286
TspDTI	ATGAA	6 cut(s)	320, 524, 653, 678, 858, 935
VpaK11BI	GGWCC	1 cut(s)	734
XapI	RAATTY	3 cut(s)	139, 235, 762
XceI	RCATGY	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	2 cut(s)	798, 1378
ZrmI	AGTACT	1 cut(s)	1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.