Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8286435.1

Orthogroup ID

OG0004036

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 765

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8286435.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 764 bp

atgaacattgcggaactgaaacagatgtgtgcaaggcctgatgttgttgaggtgtgggacgcaactgcagctgatcctaagttgctggtgtttctgaaatcataccggaacacagtacaggtgccaaggcattggagccagaagaggaaatacttacagggaacacgtggtgtcaaaaagcaaccttttcagctccctgattacattgctgctaccggaattgagaaactccgacaggcgtacaatgagaaagaagataacaagaagttgaagcaaaagcaacgagaaagaatgcagccaaagatgggcaagatggacattgattaccaggtacttcatgatgcctttttcaagcatcaggtaaagccaaagctcacaacagttggtgatctgtactacgaagggaaagagtttgatcaggtgacactgatggatcagatgaagccggatgccatgttgtcacatgaactacaagaagctcttggtatgtcagagggtgctcctccgccgtggctcattagtatgcagagatatggtcctccaccatcatatccacatctgaaaatcccggggttgaatgctcctatccccggcggagctagctttggttaccatccgggtggctggggaaagcctcctgttaatgaatatggccgacctttgtatgggaacgtttttggtgttgagcaaactaatcatgaggaagagccagttgaaaagatgaagcattggggtgagttggaggaagaagaggaagagaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

254

Amino Acids

29.25

Weight (kDa)

6.73

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11520 AT4G21660 AT4G21660 AT4G21660
fragaria_vesca	FvH4_3g04740 FvH4_6g45300
malus_domestica	MD05G1318200.v1.1 MD10G1297600.v1.1
prunus_persica	Prupe.4G042600_v2.0.a1 Prupe.4G042600_v2.0.a1
pyrus_communis	pycom05g29460 pycom10g25110
rosa_chinensis	RchiOBHm_Chr2g0163041 RchiOBHm_Chr5g0007761
rosa_laevigata	RLG00000021367 RLG00000031486
rosa_multiflora	Rmu_co8286435.1_g000001 Rmu_co8351911.1_g000001 Rmu_sc0005098.1_g000019 Rmu_sc0007039.1_g000007
rosa_roxburghii	Rroxscaffold_1G00068650 Rroxscaffold_2G00087600
rosa_rugosa	Rorug02G0500000.1 Rorug04G0430100
rosa_samantha	Rh2AG566300 Rh2BG578600 Rh2CG548500 Rh5AG058500 Rh5BG055300 Rh5CG065100 Rh5DG054300
rosa_wichuraiana	Rw2G046870 Rw5G006120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AciI	CCGC	3 cut(s)	11, 506, 594
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	2 cut(s)	68, 441
AcoI	YGGCCR	1 cut(s)	652
AcvI	CACGTG	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	4 cut(s)	117, 242, 333, 395
AfiI	CCNNNNNNNGG	3 cut(s)	305, 590, 665
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	4 cut(s)	271, 352, 577, 716
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	6 cut(s)	71, 193, 373, 479, 599, 603
AluI	AGCT	6 cut(s)	71, 193, 373, 479, 599, 603
Alw21I	GWGCWC	1 cut(s)	502
AlwI	GGATC	2 cut(s)	68, 441
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	2 cut(s)	35, 652
ApeKI	GCWGC	3 cut(s)	68, 209, 295
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	4 cut(s)	569, 570, 591, 618
AsuHPI	GGTGA	3 cut(s)	398, 433, 746
AsuNHI	GCTAGC	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbrPI	CACGTG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	80, 196, 307
BccI	CCATC	5 cut(s)	298, 307, 424, 553, 621
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	4 cut(s)	569, 570, 591, 618
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	3 cut(s)	69, 210, 296
BlsI	GCNGC	3 cut(s)	70, 211, 297
Bme1390I	CCNGG	5 cut(s)	329, 569, 570, 591, 618
Bme18I	GGWCC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	2 cut(s)	123, 137
BmrFI	CCNGG	5 cut(s)	329, 569, 570, 591, 618
BmsI	GCATC	3 cut(s)	331, 364, 439
BmtI	GCTAGC	1 cut(s)	603
BpuMI	CCSGG	4 cut(s)	569, 570, 591, 618
BsaAI	YACGTR	1 cut(s)	167
BsaJI	CCNNGG	5 cut(s)	125, 509, 568, 569, 589
BsaWI	WCCGGW	2 cut(s)	105, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 590, 665
Bse1I	ACTGG	1 cut(s)	710
Bse3DI	GCAATG	2 cut(s)	6, 204
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	5 cut(s)	125, 509, 568, 569, 589
BseGI	GGATG	2 cut(s)	454, 613
BseLI	CCNNNNNNNGG	3 cut(s)	305, 590, 665
BseMI	GCAATG	2 cut(s)	6, 204
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	1 cut(s)	492
BseXI	GCAGC	3 cut(s)	80, 196, 307
BseYI	CCCAGC	1 cut(s)	624
BshFI	GGCC	2 cut(s)	37, 654
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	6 cut(s)	106, 216, 446, 569, 591, 617
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	305, 590, 665
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	2 cut(s)	297, 583
BsnI	GGCC	2 cut(s)	37, 654
BsoBI	CYCGRG	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	73, 388, 415, 433
BspACI	CCGC	3 cut(s)	11, 506, 594
BspANI	GGCC	2 cut(s)	37, 654
BspHI	TCATGA	2 cut(s)	337, 697
BspLI	GGNNCC	2 cut(s)	123, 137
BspMAI	CTGCAG	1 cut(s)	70
BspOI	GCTAGC	1 cut(s)	603
BspPI	GGATC	2 cut(s)	68, 441
BspQI	GCTCTTC	1 cut(s)	699
BspT107I	GGYRCC	1 cut(s)	121
BsrDI	GCAATG	2 cut(s)	6, 204
BsrI	ACTGG	1 cut(s)	710
BssECI	CCNNGG	5 cut(s)	125, 509, 568, 569, 589
BssMI	GATC	4 cut(s)	73, 388, 415, 433
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	115, 382
Bst6I	CTCTTC	4 cut(s)	137, 699, 744, 750
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	601
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	509
BstEII	GGTNACC	1 cut(s)	608
BstF5I	GGATG	2 cut(s)	454, 613
BstKTI	GATC	4 cut(s)	76, 391, 418, 436
BstMBI	GATC	4 cut(s)	73, 388, 415, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 600
BstNI	CCWGG	1 cut(s)	329
BstPI	GGTNACC	1 cut(s)	608
BstSCI	CCNGG	5 cut(s)	327, 567, 568, 589, 616
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	80, 196, 307
BstXI	CCANNNNNNTGG	2 cut(s)	132, 620
BsuRI	GGCC	2 cut(s)	37, 654
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	454, 613
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	1 cut(s)	601
CciI	TCATGA	2 cut(s)	337, 697
Cfr13I	GGNCC	1 cut(s)	536
Cfr9I	CCCGGG	1 cut(s)	568
CseI	GACGC	1 cut(s)	68
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	4 cut(s)	116, 241, 332, 394
CviAII	CATG	4 cut(s)	338, 454, 464, 698
CviQI	GTAC	4 cut(s)	116, 241, 332, 394
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	4 cut(s)	75, 390, 417, 435
DpnII	GATC	4 cut(s)	73, 388, 415, 433
DraIII	CACNNNGTG	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	4 cut(s)	137, 699, 744, 750
EarI	CTCTTC	4 cut(s)	137, 699, 744, 750
EciI	GGCGGA	2 cut(s)	495, 609
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	536
Eco72I	CACGTG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	568
Eco91I	GGTNACC	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	4 cut(s)	341, 457, 467, 701
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	337, 453, 463, 697
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	69, 210, 296
FokI	GGATG	2 cut(s)	461, 600
Fsp4HI	GCNGC	3 cut(s)	69, 210, 296
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	3 cut(s)	69, 210, 296
GsaI	CCCAGC	1 cut(s)	628
HaeIII	GGCC	2 cut(s)	37, 654
HapII	CCGG	6 cut(s)	106, 216, 446, 569, 591, 617
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	4 cut(s)	341, 457, 467, 701
HpaII	CCGG	6 cut(s)	106, 216, 446, 569, 591, 617
HphI	GGTGA	3 cut(s)	398, 433, 746
Hpy188I	TCNGA	5 cut(s)	96, 233, 438, 493, 561
Hpy188III	TCNNGA	2 cut(s)	338, 698
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	115, 382
HpyCH4IV	ACGT	2 cut(s)	166, 672
HpyCH4V	TGCA	4 cut(s)	32, 68, 295, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 600
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	2 cut(s)	166, 672
Hsp92II	CATG	4 cut(s)	341, 457, 467, 701
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	73, 388, 415, 433
LguI	GCTCTTC	1 cut(s)	699
LmnI	GCTCC	5 cut(s)	135, 198, 505, 586, 596
Lsp1109I	GCAGC	3 cut(s)	80, 196, 307
LweI	GCATC	3 cut(s)	331, 364, 439
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	166, 672
MaeIII	GTNAC	3 cut(s)	421, 459, 608
MalI	GATC	4 cut(s)	75, 390, 417, 435
MboI	GATC	4 cut(s)	73, 388, 415, 433
MboII	GAAGA	5 cut(s)	154, 266, 716, 758, 761
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	256, 720
MnlI	CCTC	9 cut(s)	43, 138, 487, 513, 549, 645, 694, 736, 745
MseI	TTAA	1 cut(s)	642
MslI	CAYNNNNRTG	3 cut(s)	521, 618, 732
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	6 cut(s)	106, 216, 446, 569, 591, 617
MspR9I	CCNGG	5 cut(s)	329, 569, 570, 591, 618
Mva1269I	GAATGC	2 cut(s)	297, 583
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	68, 600
NciI	CCSGG	4 cut(s)	569, 570, 591, 618
NdeII	GATC	4 cut(s)	73, 388, 415, 433
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	4 cut(s)	341, 457, 467, 701
NlaIV	GGNNCC	2 cut(s)	123, 137
NmuCI	GTSAC	2 cut(s)	421, 459
PagI	TCATGA	2 cut(s)	337, 697
PceI	AGGCCT	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	699
PctI	GAATGC	2 cut(s)	297, 583
PkrI	GCNGC	3 cut(s)	70, 211, 297
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	167
Psp1406I	AACGTT	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	167
PspEI	GGTNACC	1 cut(s)	608
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	123, 137
PspPI	GGNCC	1 cut(s)	536
PstI	CTGCAG	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	4 cut(s)	117, 242, 333, 395
RsaNI	GTAC	4 cut(s)	116, 241, 332, 394
RseI	CAYNNNNRTG	3 cut(s)	521, 618, 732
SapI	GCTCTTC	1 cut(s)	699
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	3 cut(s)	69, 210, 296
Sau3AI	GATC	4 cut(s)	73, 388, 415, 433
Sau96I	GGNCC	1 cut(s)	536
ScrFI	CCNGG	5 cut(s)	329, 569, 570, 591, 618
SduI	GDGCHC	1 cut(s)	502
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	3 cut(s)	331, 364, 439
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	536
SmaI	CCCGGG	1 cut(s)	570
SmiMI	CAYNNNNRTG	3 cut(s)	521, 618, 732
Sse9I	AATT	1 cut(s)	219
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	3 cut(s)	11, 506, 594
SspMI	CTAG	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	5 cut(s)	327, 567, 568, 589, 616
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	115, 382
TaiI	ACGT	2 cut(s)	169, 675
TasI	AATT	1 cut(s)	219
TatI	WGTACW	2 cut(s)	115, 393
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	2 cut(s)	421, 459
TseI	GCWGC	3 cut(s)	68, 209, 295
Tsp45I	GTSAC	2 cut(s)	421, 459
TspDTI	ATGAA	6 cut(s)	17, 326, 455, 480, 660, 737
TspMI	CCCGGG	1 cut(s)	568
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	536
XmaI	CCCGGG	1 cut(s)	568
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.