Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8351911.1

Orthogroup ID

OG0004036

Physical Location & Seq

Genomic Coordinates Reverse (-)

558 .. 1019

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8351911.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggaatctgtagatagcttttcaagtggcggagctgatcagacagtacccgatgtgatcgagctgcggaagcagcagagaaaagaaacagctgaaaggcctttgtaccaagtacttgaagagaaagaagaaagagttgctgcagggacattgctcggaacaactcacacgtatgttgttggcagcaacagcagccgagacgccaaggcaggagcgaaaagggtggatctgctcagatgtcataaagcagataaagtggatgtgactctacaacctgaagagttggaagctatggagaatgtgttacctgagaagtatcaacaagccagggaggaggagaagatgcgtagtcagccggaggattttagtgacatggttgcggagaacgagaagcagaggaagcgtaagatgcaggcaaaggaagccaaatccaacaagaagcagaaggattttaagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

153

Amino Acids

17.52

Weight (kDa)

6.21

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11520 AT4G21660 AT4G21660 AT4G21660
fragaria_vesca	FvH4_3g04740 FvH4_6g45300
malus_domestica	MD05G1318200.v1.1 MD10G1297600.v1.1
prunus_persica	Prupe.4G042600_v2.0.a1 Prupe.4G042600_v2.0.a1
pyrus_communis	pycom05g29460 pycom10g25110
rosa_chinensis	RchiOBHm_Chr2g0163041 RchiOBHm_Chr5g0007761
rosa_laevigata	RLG00000021367 RLG00000031486
rosa_multiflora	Rmu_co8286435.1_g000001 Rmu_co8351911.1_g000001 Rmu_sc0005098.1_g000019 Rmu_sc0007039.1_g000007
rosa_roxburghii	Rroxscaffold_1G00068650 Rroxscaffold_2G00087600
rosa_rugosa	Rorug02G0500000.1 Rorug04G0430100
rosa_samantha	Rh2AG566300 Rh2BG578600 Rh2CG548500 Rh5AG058500 Rh5BG055300 Rh5CG065100 Rh5DG054300
rosa_wichuraiana	Rw2G046870 Rw5G006120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	30, 67, 380
AclWI	GGATC	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	3 cut(s)	48, 107, 114
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	24, 119
AjnI	CCWGG	1 cut(s)	326
AloI	GAACNNNNNNTCC	1 cut(s)	440
AluBI	AGCT	5 cut(s)	18, 35, 64, 92, 290
AluI	AGCT	5 cut(s)	18, 35, 64, 92, 290
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	5 cut(s)	64, 73, 140, 183, 192
BbvI	GCAGC	5 cut(s)	51, 85, 127, 195, 204
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	460
BfmI	CTRYAG	2 cut(s)	9, 141
BisI	GCNGC	5 cut(s)	65, 74, 141, 184, 193
BlsI	GCNGC	5 cut(s)	66, 75, 142, 185, 194
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	2 cut(s)	333, 399
BsaAI	YACGTR	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	204, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bse3DI	GCAATG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	204, 327
BseGI	GGATG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	247, 300
BseRI	GAGGAG	2 cut(s)	347, 350
BseXI	GCAGC	5 cut(s)	51, 85, 127, 195, 204
BshFI	GGCC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	192
BsmBI	CGTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	37, 57, 226
BspACI	CCGC	3 cut(s)	30, 67, 380
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	246, 301
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	204, 327
BssMI	GATC	3 cut(s)	37, 57, 226
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	114, 273
BstACI	GRCGYC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	233, 309
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	40, 60, 229
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	37, 57, 226
BstMWI	GCNNNNNNNGC	8 cut(s)	70, 73, 189, 192, 352, 400, 409, 422
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	2 cut(s)	9, 141
BstV1I	GCAGC	5 cut(s)	51, 85, 127, 195, 204
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	414
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	47, 106, 113
CviAII	CATG	1 cut(s)	373
CviQI	GTAC	3 cut(s)	47, 106, 113
DdeI	CTNAG	2 cut(s)	233, 309
DpnI	GATC	3 cut(s)	39, 59, 228
DpnII	GATC	3 cut(s)	37, 57, 226
Eam1104I	CTCTTC	2 cut(s)	114, 273
EarI	CTCTTC	2 cut(s)	114, 273
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	1 cut(s)	376
FaiI	YATR	4 cut(s)	174, 243, 293, 374
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	5 cut(s)	65, 74, 141, 184, 193
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	5 cut(s)	65, 74, 141, 184, 193
FspBI	CTAG	1 cut(s)	460
GluI	GCNGC	5 cut(s)	65, 74, 141, 184, 193
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	356
HgaI	GACGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	376
HinfI	GANTC	2 cut(s)	5, 265
HpaII	CCGG	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	42, 158, 236
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	143, 412
HpyF10VI	GCNNNNNNNGC	8 cut(s)	70, 73, 189, 192, 352, 400, 409, 422
HpyF3I	CTNAG	2 cut(s)	233, 309
HpySE526I	ACGT	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	37, 57, 226
LmnI	GCTCC	2 cut(s)	32, 212
LpnPI	CCDG	8 cut(s)	129, 195, 288, 313, 321, 340, 369, 398
Lsp1109I	GCAGC	5 cut(s)	51, 85, 127, 195, 204
LweI	GCATC	2 cut(s)	333, 399
MaeI	CTAG	1 cut(s)	460
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	3 cut(s)	262, 303, 368
MalI	GATC	3 cut(s)	39, 59, 228
MboI	GATC	3 cut(s)	37, 57, 226
MboII	GAAGA	4 cut(s)	131, 140, 290, 352
MflI	RGATCY	1 cut(s)	226
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	264, 456
MnlI	CCTC	4 cut(s)	325, 328, 352, 390
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	8 cut(s)	70, 73, 189, 192, 352, 400, 409, 422
NdeII	GATC	3 cut(s)	37, 57, 226
NlaIII	CATG	1 cut(s)	376
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	2 cut(s)	262, 368
PceI	AGGCCT	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	5 cut(s)	66, 75, 142, 185, 194
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	3 cut(s)	48, 107, 114
RsaNI	GTAC	3 cut(s)	47, 106, 113
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	5 cut(s)	65, 74, 141, 184, 193
Sau3AI	GATC	3 cut(s)	37, 57, 226
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	8 cut(s)	20, 37, 66, 94, 173, 277, 292, 310
SfaNI	GCATC	2 cut(s)	333, 399
SfcI	CTRYAG	2 cut(s)	9, 141
SmiMI	CAYNNNNRTG	1 cut(s)	171
SseBI	AGGCCT	1 cut(s)	100
SsiI	CCGC	3 cut(s)	30, 67, 380
SspMI	CTAG	1 cut(s)	460
StuI	AGGCCT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	60
TatI	WGTACW	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TseFI	GTSAC	2 cut(s)	262, 368
TseI	GCWGC	5 cut(s)	64, 73, 140, 183, 192
Tsp45I	GTSAC	2 cut(s)	262, 368
XspI	CTAG	1 cut(s)	460
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.