Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010111

Physical Location & Seq

Genomic Coordinates Reverse (-)

3969681 .. 3971911

Gene Structure 2231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11755.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGATTCGAATCAATCGATGCGGCTCCTCAGTGCTTGGATTGGTCAAATTGGTGATCTTGGTCTTAATTTGCTATGGCGTTTTATACACATTGTTGTGAGCTTATGGTACATTGTCTCTGGCATATTTGAGGCAATAGAAAGCTATGCCATAACGTTAGGATTGAATAAAAAGTACGGTTCCATCGATCTTGAGAAACTCCGGTGTCTAGCTGTTGTAGTGGACATCGAAGCAGCTCAAGATGTTGCCAATGTTGTTGAGCTTTTGCAATGGCTAACCACCATTGGGGTTAAACAAGTTGGTCTATTTGACTCTCAAGGTTTATTGAAGAAATCCAAGGATTTGATCCTTGAAACCGTTCCAGGTTCCATGTTGTTAGAGGAGATTGAAAAGGATGTTGCGCCTGACGGAAAGCGCATTGCATTAGAATTCATTTCATCTTCAGACAATAAAGAAGCTGTTATGAAAGCAGCCAACATACTTCTTCAGAGATACTTGAAATCCAGCCATCCTGAGGACGACAAAGGGGAAGACTTTTTTACAGAGTCTCATTTGAATGACGCATTAAGAGTTGTTGGTGAGAATGTGCATGTACCCGATCTGTTACTGGTTTATGGACCTATAAGGAGCCACCTCGGTTTCCCTGCTTGGAGACTTCGATACACTGAGATAGTACATATGGGAACTTTGAAGTATATGAGATATGGTTCCCTTTTGAAGGCAATTCACAAGTTCACAGGAGTCCACCAAAACTATGGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.55

Weight (kDa)

5.91

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11755
fragaria_vesca	FvH4_2g08440 FvH4_2g08440 FvH4_2g08440
malus_domestica	MD10G1078800.v1.1
prunus_persica	Prupe.8G100600_v2.0.a1 Prupe.8G100800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263721
rosa_laevigata	RLG00000014319
rosa_multiflora	Rmu_sc0003570.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431180 Rroxscaffold_7G00204010
rosa_rugosa	Rorug06G0005800 Rorug06G0005900 Rorug06G0006000
rosa_samantha	Rh6AG125400 Rh6BG121700 Rh6CG120000 Rh6DG107800
rosa_wichuraiana	Rw0G005270 Rw6G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	22
AclI	AACGTT	1 cut(s)	155
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	2 cut(s)	426, 470
AfaI	GTAC	4 cut(s)	110, 176, 594, 675
AfiI	CCNNNNNNNGG	3 cut(s)	285, 514, 718
AgsI	TTSAA	8 cut(s)	166, 328, 353, 389, 499, 556, 691, 718
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	6 cut(s)	102, 144, 212, 236, 262, 458
AluI	AGCT	6 cut(s)	102, 144, 212, 236, 262, 458
Alw26I	GTCTC	3 cut(s)	121, 552, 646
AlwI	GGATC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	233, 470
ApoI	RAATTY	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	403, 417
AspS9I	GGNCC	1 cut(s)	617
AsuHPI	GGTGA	2 cut(s)	65, 590
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	617
AxyI	CCTNAGG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	245, 482
BccI	CCATC	2 cut(s)	191, 516
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	3 cut(s)	121, 552, 646
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	3 cut(s)	23, 234, 471
BlsI	GCNGC	3 cut(s)	24, 235, 472
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	617
BmiI	GGNNCC	5 cut(s)	26, 181, 367, 629, 709
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	3 cut(s)	212, 222, 300
Bsa29I	ATCGAT	2 cut(s)	17, 186
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	336, 634
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 514, 718
Bse1I	ACTGG	1 cut(s)	612
Bse21I	CCTNAGG	1 cut(s)	513
Bse3DI	GCAATG	2 cut(s)	275, 417
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	363
BseCI	ATCGAT	2 cut(s)	17, 186
BseDI	CCNNGG	2 cut(s)	336, 634
BseGI	GGATG	2 cut(s)	400, 508
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	285, 514, 718
BseMI	GCAATG	2 cut(s)	275, 417
BseMII	CTCAG	3 cut(s)	43, 504, 657
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	2 cut(s)	17, 395
BseXI	GCAGC	2 cut(s)	245, 482
BshVI	ATCGAT	2 cut(s)	17, 186
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	285, 514, 718
BsmAI	GTCTC	3 cut(s)	121, 552, 646
Bsp119I	TTCGAA	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	55, 187, 345, 598
BspACI	CCGC	1 cut(s)	22
BspCNI	CTCAG	3 cut(s)	42, 505, 658
BspDI	ATCGAT	2 cut(s)	17, 186
BspLI	GGNNCC	5 cut(s)	26, 181, 367, 629, 709
BspPI	GGATC	1 cut(s)	340
BspT104I	TTCGAA	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	275, 417
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	336, 634
BssMI	GATC	4 cut(s)	55, 187, 345, 598
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	179, 358
BstBI	TTCGAA	1 cut(s)	8
BstDEI	CTNAG	3 cut(s)	29, 513, 666
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	2 cut(s)	400, 508
BstHHI	GCGC	2 cut(s)	403, 417
BstKTI	GATC	4 cut(s)	58, 190, 348, 601
BstMAI	GTCTC	3 cut(s)	121, 552, 646
BstMBI	GATC	4 cut(s)	55, 187, 345, 598
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	245, 482
BstV2I	GAAGAC	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	755
Bsu15I	ATCGAT	2 cut(s)	17, 186
Bsu36I	CCTNAGG	1 cut(s)	513
BsuTUI	ATCGAT	2 cut(s)	17, 186
BtsCI	GGATG	2 cut(s)	400, 508
BtsIMutI	CAGTG	2 cut(s)	37, 663
CfoI	GCGC	2 cut(s)	403, 417
Cfr13I	GGNCC	1 cut(s)	617
ClaI	ATCGAT	2 cut(s)	17, 186
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	4 cut(s)	109, 175, 593, 674
CviAII	CATG	2 cut(s)	370, 590
CviQI	GTAC	4 cut(s)	109, 175, 593, 674
DdeI	CTNAG	3 cut(s)	29, 513, 666
DpnI	GATC	4 cut(s)	57, 189, 347, 600
DpnII	GATC	4 cut(s)	55, 187, 345, 598
Eco130I	CCWWGG	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	617
Eco57I	CTGAAG	2 cut(s)	426, 470
Eco81I	CCTNAGG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	373, 593
FatI	CATG	2 cut(s)	369, 589
FauNDI	CATATG	1 cut(s)	678
Fnu4HI	GCNGC	3 cut(s)	23, 234, 471
FokI	GGATG	2 cut(s)	407, 495
Fsp4HI	GCNGC	3 cut(s)	23, 234, 471
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	2 cut(s)	402, 416
GluI	GCNGC	3 cut(s)	23, 234, 471
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	2 cut(s)	403, 417
Hin1II	CATG	2 cut(s)	373, 593
Hin6I	GCGC	2 cut(s)	401, 415
HinP1I	GCGC	2 cut(s)	401, 415
HinfI	GANTC	5 cut(s)	5, 10, 311, 545, 741
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	2 cut(s)	65, 590
Hpy166II	GTNNAC	3 cut(s)	223, 735, 745
Hpy188I	TCNGA	2 cut(s)	445, 489
Hpy188III	TCNNGA	3 cut(s)	191, 239, 512
Hpy8I	GTNNAC	3 cut(s)	223, 735, 745
HpyAV	CCTTC	1 cut(s)	712
HpyCH4III	ACNGT	2 cut(s)	179, 358
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	268, 422, 589
HpyF3I	CTNAG	3 cut(s)	29, 513, 666
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	373, 593
HspAI	GCGC	2 cut(s)	401, 415
Kzo9I	GATC	4 cut(s)	55, 187, 345, 598
LmnI	GCTCC	2 cut(s)	30, 627
Lsp1109I	GCAGC	2 cut(s)	245, 482
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	603
MalI	GATC	4 cut(s)	57, 189, 347, 600
MboI	GATC	4 cut(s)	55, 187, 345, 598
MboII	GAAGA	4 cut(s)	340, 432, 476, 542
MluCI	AATT	4 cut(s)	48, 67, 428, 723
MlyI	GAGTC	3 cut(s)	305, 554, 750
MnlI	CCTC	5 cut(s)	38, 124, 373, 508, 644
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	4 cut(s)	66, 291, 566, 763
MslI	CAYNNNNRTG	2 cut(s)	95, 555
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	4 cut(s)	55, 187, 345, 598
NlaIII	CATG	2 cut(s)	373, 593
NlaIV	GGNNCC	5 cut(s)	26, 181, 367, 629, 709
NspI	RCATGY	1 cut(s)	593
NspV	TTCGAA	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 183
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	5, 10
PkrI	GCNGC	3 cut(s)	24, 235, 472
PleI	GAGTC	3 cut(s)	305, 553, 749
PpsI	GAGTC	3 cut(s)	305, 553, 749
Psp1406I	AACGTT	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	5 cut(s)	26, 181, 367, 629, 709
PspPI	GGNCC	1 cut(s)	617
RsaI	GTAC	4 cut(s)	110, 176, 594, 675
RsaNI	GTAC	4 cut(s)	109, 175, 593, 674
RseI	CAYNNNNRTG	2 cut(s)	95, 555
SaqAI	TTAA	4 cut(s)	66, 291, 566, 763
SatI	GCNGC	3 cut(s)	23, 234, 471
Sau3AI	GATC	4 cut(s)	55, 187, 345, 598
Sau96I	GGNCC	1 cut(s)	617
SchI	GAGTC	3 cut(s)	305, 554, 750
ScrFI	CCNGG	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	95, 555
SmlI	CTYRAG	3 cut(s)	191, 237, 315
SmoI	CTYRAG	3 cut(s)	191, 237, 315
Sse9I	AATT	4 cut(s)	48, 67, 428, 723
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	179, 358
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	5 cut(s)	8, 17, 186, 228, 658
TasI	AATT	4 cut(s)	48, 67, 428, 723
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	5, 10
Tru1I	TTAA	4 cut(s)	66, 291, 566, 763
Tru9I	TTAA	4 cut(s)	66, 291, 566, 763
TscAI	CASTG	2 cut(s)	37, 670
TseI	GCWGC	2 cut(s)	233, 470
TspDTI	ATGAA	3 cut(s)	421, 426, 479
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	37, 670
VpaK11BI	GGWCC	1 cut(s)	617
XagI	CCTNNNNNAGG	1 cut(s)	716
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	1 cut(s)	593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.