Rw0G005270

Dehydrodolichyl diphosphate syntase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00205
OG0010111
Physical Location & Seq
Forward (+)
458 .. 3615
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005270.1

Sequence Viewer

Length: 786 bp
ATGGGCTTTGGTTTCTACAATTTAGGAGTAGCTCGTTTTCAGCTAATCTGGATTACAATGCAGCAGTTACTTAAGTACTTAACTCTGTTGCTCATATTCATGACTGGCAATCTTGGGCTACTGCTCCTCTGGCATATTCTGCATCTTTTTGTCAGACTATGGTACTTTCTGTTGTGGATGGTTTATGTGCTTGAGAGCTATCTCATTTCTGGTGGAATACTTAAGAAGTATAAAGCCCTTAACGTAGGTAAACTACGGTACCTGGCAATTGTAGTAGAAAGTGAAGAGGCATACGAAACTTCCAAAATTATTCAGCTTCTGCAGTGGCTAGAAGCTATGGGTGTGAAACGTGTGTGCCTCTACGACACAGAAGGAGTGTTGAAGAAATCAAAAGAAGTCATCTTGACAAAACTGAAAAATGCAGTAGTATATGAGGAAGGTTATCAAGATGAAAGCTTAGTTGACCAAAAACGCATGTCTCTAGAATTTTGTTCATTCTCTGATGGAAAAGAATATTTGAAATTGGCAACACTACCTGGTGATCATGAAGAGAAAATCTTTACAGAACCTCACATGGATGGTGCACTTAAAGCTATTGGTGGCAGAGGGCCGGACCCTGACCTCCTATTAGTTTATGGACCTGCAAGATGCCACCTTGGTTTTCCTGCATGGAGAATGCGATATACTGAGATTGTACACATGGGTCAGCTAATGCATATGAGATACGGTTCCCTAATTAAAGCCATTTACAGGTTCACCACTGTGCGCCAAAACTATGTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

30.35

Weight (kDa)

9.03

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 649
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 485
AfaI GTAC 4 cut(s) 77, 164, 260, 696
AfiI CCNNNNNNNGG 1 cut(s) 750
AflII CTTAAG 2 cut(s) 71, 221
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 2 cut(s) 382, 520
AjnI CCWGG 2 cut(s) 261, 535
AleI CACNNNNGTG 1 cut(s) 761
AluBI AGCT 8 cut(s) 32, 43, 198, 316, 335, 456, 593, 709
AluI AGCT 8 cut(s) 32, 43, 198, 316, 335, 456, 593, 709
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 1 cut(s) 483
Alw44I GTGCAC 1 cut(s) 582
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 1 cut(s) 608
ApaLI GTGCAC 1 cut(s) 582
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 485
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 3 cut(s) 608, 613, 638
AsuHPI GGTGA 2 cut(s) 551, 748
AvaII GGWCC 2 cut(s) 613, 638
BaeGI GKGCMC 1 cut(s) 586
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BanI GGYRCC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 1 cut(s) 73
BccI CCATC 3 cut(s) 172, 497, 572
BciT130I CCWGG 2 cut(s) 263, 537
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 2 cut(s) 329, 482
BfmI CTRYAG 1 cut(s) 320
BfrI CTTAAG 2 cut(s) 71, 221
BfuAI ACCTGC 1 cut(s) 649
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 263, 537
Bme18I GGWCC 2 cut(s) 613, 638
BmgT120I GGNCC 3 cut(s) 608, 613, 638
BmiI GGNNCC 3 cut(s) 260, 615, 730
BmrFI CCNGG 2 cut(s) 263, 537
BmsI GCATC 2 cut(s) 151, 638
BpuEI CTTGAG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 655
Bsc4I CCNNNNNNNGG 1 cut(s) 750
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 2 cut(s) 263, 537
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 2 cut(s) 183, 583
BseLI CCNNNNNNNGG 1 cut(s) 750
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 116
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 610
BshNI GGYRCC 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 1 cut(s) 611
BslI CCNNNNNNNGG 1 cut(s) 750
BsmAI GTCTC 1 cut(s) 483
BsmI GAATGC 1 cut(s) 681
BsnI GGCC 1 cut(s) 610
Bsp1286I GDGCHC 1 cut(s) 586
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 1 cut(s) 541
BspANI GGCC 1 cut(s) 610
BspCNI CTCAG 1 cut(s) 679
BspHI TCATGA 2 cut(s) 99, 544
BspLI GGNNCC 3 cut(s) 260, 615, 730
BspMAI CTGCAG 1 cut(s) 324
BspMI ACCTGC 1 cut(s) 649
BspT107I GGYRCC 1 cut(s) 258
BspTI CTTAAG 2 cut(s) 71, 221
BsrGI TGTACA 1 cut(s) 694
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 1 cut(s) 541
BssT1I CCWWGG 1 cut(s) 655
Bst2UI CCWGG 2 cut(s) 263, 537
Bst4CI ACNGT 3 cut(s) 258, 728, 763
Bst6I CTCTTC 2 cut(s) 279, 543
BstAFI CTTAAG 2 cut(s) 71, 221
BstAPI GCANNNNNTGC 1 cut(s) 139
BstAUI TGTACA 1 cut(s) 694
BstDEI CTNAG 2 cut(s) 457, 687
BstF5I GGATG 2 cut(s) 183, 583
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 1 cut(s) 544
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 1 cut(s) 541
BstMWI GCNNNNNNNGC 3 cut(s) 130, 139, 590
BstNI CCWGG 2 cut(s) 263, 537
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 2 cut(s) 261, 535
BstSFI CTRYAG 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 610
BtsCI GGATG 2 cut(s) 183, 583
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 2 cut(s) 329, 759
BveI ACCTGC 1 cut(s) 649
CaiI CAGNNNCTG 1 cut(s) 319
CciI TCATGA 2 cut(s) 99, 544
CfoI GCGC 1 cut(s) 768
Cfr13I GGNCC 3 cut(s) 608, 613, 638
CsiI ACCWGGT 1 cut(s) 535
Csp6I GTAC 4 cut(s) 76, 163, 259, 695
CviAII CATG 6 cut(s) 100, 475, 545, 574, 669, 700
CviQI GTAC 4 cut(s) 76, 163, 259, 695
DdeI CTNAG 2 cut(s) 457, 687
DpnI GATC 1 cut(s) 543
DpnII GATC 1 cut(s) 541
Eam1104I CTCTTC 2 cut(s) 279, 543
EarI CTCTTC 2 cut(s) 279, 543
Eco130I CCWWGG 1 cut(s) 655
Eco47I GGWCC 2 cut(s) 613, 638
EcoRII CCWGG 2 cut(s) 261, 535
EcoT14I CCWWGG 1 cut(s) 655
EcoT22I ATGCAT 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 655
FaeI CATG 6 cut(s) 103, 478, 548, 577, 672, 703
FatI CATG 6 cut(s) 99, 474, 544, 573, 668, 699
FauNDI CATATG 1 cut(s) 717
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 2 cut(s) 190, 590
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 2 cut(s) 329, 482
GlaI GCGC 1 cut(s) 767
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 610
HapII CCGG 1 cut(s) 611
HhaI GCGC 1 cut(s) 768
Hin1II CATG 6 cut(s) 103, 478, 548, 577, 672, 703
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 454
HpaII CCGG 1 cut(s) 611
HphI GGTGA 2 cut(s) 551, 748
Hpy166II GTNNAC 5 cut(s) 251, 463, 584, 697, 756
Hpy188I TCNGA 2 cut(s) 155, 502
Hpy188III TCNNGA 6 cut(s) 49, 100, 403, 446, 482, 545
Hpy8I GTNNAC 5 cut(s) 251, 463, 584, 697, 756
HpyAV CCTTC 2 cut(s) 365, 431
HpyCH4III ACNGT 3 cut(s) 258, 728, 763
HpyCH4IV ACGT 2 cut(s) 243, 349
HpyCH4V TGCA 8 cut(s) 61, 142, 322, 422, 584, 644, 668, 715
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 139, 590
HpyF3I CTNAG 2 cut(s) 457, 687
HpySE526I ACGT 2 cut(s) 243, 349
Hsp92II CATG 6 cut(s) 103, 478, 548, 577, 672, 703
HspAI GCGC 1 cut(s) 766
KpnI GGTACC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 1 cut(s) 541
LmnI GCTCC 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 2 cut(s) 151, 638
MabI ACCWGGT 1 cut(s) 535
MaeI CTAG 2 cut(s) 329, 482
MaeII ACGT 2 cut(s) 243, 349
MaeIII GTNAC 1 cut(s) 66
MalI GATC 1 cut(s) 543
MboI GATC 1 cut(s) 541
MboII GAAGA 3 cut(s) 296, 394, 560
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 6 cut(s) 19, 267, 306, 485, 521, 735
MnlI CCTC 7 cut(s) 137, 280, 368, 427, 579, 599, 632
Mph1103I ATGCAT 1 cut(s) 717
MseI TTAA 6 cut(s) 72, 80, 222, 240, 588, 738
MslI CAYNNNNRTG 3 cut(s) 98, 576, 761
MspCI CTTAAG 2 cut(s) 71, 221
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 2 cut(s) 263, 537
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 681
MvaI CCWGG 2 cut(s) 263, 537
MwoI GCNNNNNNNGC 3 cut(s) 130, 139, 590
NdeI CATATG 1 cut(s) 717
NdeII GATC 1 cut(s) 541
NlaIII CATG 6 cut(s) 103, 478, 548, 577, 672, 703
NlaIV GGNNCC 3 cut(s) 260, 615, 730
NsiI ATGCAT 1 cut(s) 717
NspI RCATGY 1 cut(s) 478
OliI CACNNNNGTG 1 cut(s) 761
PagI TCATGA 2 cut(s) 99, 544
PctI GAATGC 1 cut(s) 681
PkrI GCNGC 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 261, 535
PspGI CCWGG 2 cut(s) 261, 535
PspN4I GGNNCC 3 cut(s) 260, 615, 730
PspPI GGNCC 3 cut(s) 608, 613, 638
PstI CTGCAG 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 319
RsaI GTAC 4 cut(s) 77, 164, 260, 696
RsaNI GTAC 4 cut(s) 76, 163, 259, 695
RseI CAYNNNNRTG 3 cut(s) 98, 576, 761
SaqAI TTAA 6 cut(s) 72, 80, 222, 240, 588, 738
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 541
Sau96I GGNCC 3 cut(s) 608, 613, 638
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 263, 537
SduI GDGCHC 1 cut(s) 586
SexAI ACCWGGT 1 cut(s) 535
SfaNI GCATC 2 cut(s) 151, 638
SfcI CTRYAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 613, 638
SmiMI CAYNNNNRTG 3 cut(s) 98, 576, 761
SmlI CTYRAG 3 cut(s) 71, 191, 221
SmoI CTYRAG 3 cut(s) 71, 191, 221
Sse9I AATT 6 cut(s) 19, 267, 306, 485, 521, 735
SspI AATATT 1 cut(s) 515
SspMI CTAG 2 cut(s) 329, 482
StyD4I CCNGG 2 cut(s) 261, 535
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 3 cut(s) 258, 728, 763
TaiI ACGT 2 cut(s) 246, 352
TasI AATT 6 cut(s) 19, 267, 306, 485, 521, 735
TatI WGTACW 2 cut(s) 75, 694
Tru1I TTAA 6 cut(s) 72, 80, 222, 240, 588, 738
Tru9I TTAA 6 cut(s) 72, 80, 222, 240, 588, 738
TscAI CASTG 2 cut(s) 329, 766
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 4 cut(s) 88, 465, 483, 561
TspRI CASTG 2 cut(s) 329, 766
Vha464I CTTAAG 2 cut(s) 71, 221
VneI GTGCAC 1 cut(s) 582
VpaK11BI GGWCC 2 cut(s) 613, 638
XapI RAATTY 1 cut(s) 485
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 1 cut(s) 478
XspI CTAG 2 cut(s) 329, 482
ZrmI AGTACT 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.