Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010111

Physical Location & Seq

Genomic Coordinates Reverse (-)

13990304 .. 13995663

Gene Structure 5360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG120000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCGTTTTACCTTAATAAAACCTAAATTTAATGTTGATCCTGGGTTGATATTGGTTCAGACTGGCAATCTTGGGCTACTGCTCCTCTGGCATATTCTGCATCTTTTTGTCAGACTATGGTACTTTCTGTTGTGGATGGTTTATGTGCTTGAGAGCTATCTCATTTCTGGTGGAATACTTAAGAAGTATAAAGCCCTTAACGTAGGTAAACTACGGTACCTGGCGATTGTAGTAGAAAGTGAAGAGGCATACGAAACTTCCAAAGTTATTGAGCTTCTGCAGTGGCTAGAAGCTATGGGCGTGAAACGTGTGTGCCTCTACGACACAGAAGGAGTGTTGAAGAAATCAAAAGAAGTCATCTTGACAAAACTGAAAAATGCAGTAGTAGATGAGGAAGGTTATCAAGATGAAAGCTTAGTTGACCAAAAACGCATGTCTCTAGAATTTTGTTCATTCTCTGATGGAAAAGAAGCTATAACCAAAGCAGCTAACTTGCTCTTTGTGAAGTATTTGAAATTGGCAACACTACCTGGTGATCATGAAGAGAAAATCTTTACAGAACCTCACATGGATGATGCACTTAAAGCTATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.7

Weight (kDa)

6.44

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11755
fragaria_vesca	FvH4_2g08440 FvH4_2g08440 FvH4_2g08440
malus_domestica	MD10G1078800.v1.1
prunus_persica	Prupe.8G100600_v2.0.a1 Prupe.8G100800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263721
rosa_laevigata	RLG00000014319
rosa_multiflora	Rmu_sc0003570.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431180 Rroxscaffold_7G00204010
rosa_rugosa	Rorug06G0005800 Rorug06G0005900 Rorug06G0006000
rosa_samantha	Rh6AG125400 Rh6BG121700 Rh6CG120000 Rh6DG107800
rosa_wichuraiana	Rw0G005270 Rw6G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	26, 443
AfaI	GTAC	2 cut(s)	122, 218
AflII	CTTAAG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	340, 514
AjnI	CCWGG	3 cut(s)	40, 219, 529
AluBI	AGCT	7 cut(s)	156, 274, 293, 414, 473, 488, 587
AluI	AGCT	7 cut(s)	156, 274, 293, 414, 473, 488, 587
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	2 cut(s)	26, 443
Asp718I	GGTACC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	545
BaeI	ACNNNNGTAYC	2 cut(s)	200, 233
BanI	GGYRCC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	2 cut(s)	130, 455
BciT130I	CCWGG	3 cut(s)	42, 221, 531
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	287, 440
BfmI	CTRYAG	1 cut(s)	278
BfrI	CTTAAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	3 cut(s)	42, 221, 531
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	3 cut(s)	42, 221, 531
BmsI	GCATC	2 cut(s)	109, 565
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	3 cut(s)	42, 221, 531
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	141, 577
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	37, 535
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	37, 535
Bst2UI	CCWGG	3 cut(s)	42, 221, 531
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	2 cut(s)	237, 537
BstAFI	CTTAAG	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	415
BstF5I	GGATG	2 cut(s)	141, 577
BstKTI	GATC	2 cut(s)	40, 538
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	2 cut(s)	37, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 97, 584
BstNI	CCWGG	3 cut(s)	42, 221, 531
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	3 cut(s)	40, 219, 529
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	141, 577
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	538
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	121, 217
CviAII	CATG	3 cut(s)	433, 539, 568
CviQI	GTAC	2 cut(s)	121, 217
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	2 cut(s)	39, 537
DpnII	GATC	2 cut(s)	37, 535
Eam1104I	CTCTTC	2 cut(s)	237, 537
EarI	CTCTTC	2 cut(s)	237, 537
EcoRII	CCWGG	3 cut(s)	40, 219, 529
FaeI	CATG	3 cut(s)	436, 542, 571
FatI	CATG	3 cut(s)	432, 538, 567
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	2 cut(s)	148, 584
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	287, 440
GluI	GCNGC	1 cut(s)	486
Hin1II	CATG	3 cut(s)	436, 542, 571
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	412
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	2 cut(s)	209, 421
Hpy188I	TCNGA	3 cut(s)	60, 113, 460
Hpy188III	TCNNGA	4 cut(s)	361, 404, 440, 539
Hpy8I	GTNNAC	2 cut(s)	209, 421
HpyAV	CCTTC	2 cut(s)	323, 389
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4IV	ACGT	2 cut(s)	201, 307
HpyCH4V	TGCA	4 cut(s)	100, 280, 380, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 97, 584
HpyF3I	CTNAG	1 cut(s)	415
HpySE526I	ACGT	2 cut(s)	201, 307
Hsp92II	CATG	3 cut(s)	436, 542, 571
KpnI	GGTACC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	2 cut(s)	37, 535
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	9 cut(s)	27, 48, 54, 73, 153, 206, 233, 516, 543
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	2 cut(s)	109, 565
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	2 cut(s)	287, 440
MaeII	ACGT	2 cut(s)	201, 307
MalI	GATC	2 cut(s)	39, 537
MboI	GATC	2 cut(s)	37, 535
MboII	GAAGA	3 cut(s)	254, 352, 554
MluCI	AATT	3 cut(s)	26, 443, 515
MnlI	CCTC	5 cut(s)	95, 238, 326, 385, 573
MseI	TTAA	5 cut(s)	14, 30, 180, 198, 582
MslI	CAYNNNNRTG	1 cut(s)	570
MspCI	CTTAAG	1 cut(s)	179
MspR9I	CCNGG	3 cut(s)	42, 221, 531
MvaI	CCWGG	3 cut(s)	42, 221, 531
MwoI	GCNNNNNNNGC	3 cut(s)	88, 97, 584
NdeII	GATC	2 cut(s)	37, 535
NlaIII	CATG	3 cut(s)	436, 542, 571
NlaIV	GGNNCC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	436
PagI	TCATGA	1 cut(s)	538
PkrI	GCNGC	1 cut(s)	487
Psp6I	CCWGG	3 cut(s)	40, 219, 529
PspGI	CCWGG	3 cut(s)	40, 219, 529
PspN4I	GGNNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	2 cut(s)	122, 218
RsaNI	GTAC	2 cut(s)	121, 217
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	5 cut(s)	14, 30, 180, 198, 582
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	2 cut(s)	37, 535
ScrFI	CCNGG	3 cut(s)	42, 221, 531
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	2 cut(s)	109, 565
SfcI	CTRYAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	149, 179
SmoI	CTYRAG	2 cut(s)	149, 179
Sse9I	AATT	3 cut(s)	26, 443, 515
SspMI	CTAG	2 cut(s)	287, 440
StyD4I	CCNGG	3 cut(s)	40, 219, 529
TaaI	ACNGT	1 cut(s)	216
TaiI	ACGT	2 cut(s)	204, 310
TasI	AATT	3 cut(s)	26, 443, 515
Tru1I	TTAA	5 cut(s)	14, 30, 180, 198, 582
Tru9I	TTAA	5 cut(s)	14, 30, 180, 198, 582
TscAI	CASTG	1 cut(s)	287
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	3 cut(s)	423, 441, 555
TspRI	CASTG	1 cut(s)	287
Vha464I	CTTAAG	1 cut(s)	179
XapI	RAATTY	2 cut(s)	26, 443
XbaI	TCTAGA	1 cut(s)	439
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	2 cut(s)	287, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.