Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010111

Physical Location & Seq

Genomic Coordinates Forward (+)

13222103 .. 13223246

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTTCTTCAAAGCTATCTTATTTCTGGTGGAGTACTCGAGCTACAAAGCCCTTAATTTGGGCAAGCTACGTTACCTGGCAATTGTGATAGAAAGTGAAGAAGCTTACCAAACATCAAAAGTAATTGAGCTGCTGCAGTGGCTAGAAGCTATTGGTGTGAAGCGTGTGTGCCTCTATGATACAGAAGGAGTGTTGAAGAAATCAAAAGAAGCCATCTTGAATAAACTGAGAAATGCAAGCGAATTTAAGGCTTATGAAGATTTAGACGATCAAAACCACATGGCTCTGGAAATTTTGTCATTTTCTGATGGAAAAGAAGCTGTAACCAAAGCAGCTAACTTACTTTTTGTGAAGTATTTGAAGTTGGCCAAATCAGTTGGAGATCATGAAGAGAAAATCTTTACAGAACCTAACATGGATGAGGCACTAAAAGCTATTTGTTGTAGAGGGCCAGACCCTGAAAGCATATTCTACCTGGAAAGGATACAAAAGGGCTATGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

19.27

Weight (kDa)

5.27

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11755
fragaria_vesca	FvH4_2g08440 FvH4_2g08440 FvH4_2g08440
malus_domestica	MD10G1078800.v1.1
prunus_persica	Prupe.8G100600_v2.0.a1 Prupe.8G100800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263721
rosa_laevigata	RLG00000014319
rosa_multiflora	Rmu_sc0003570.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431180 Rroxscaffold_7G00204010
rosa_rugosa	Rorug06G0005800 Rorug06G0005900 Rorug06G0006000
rosa_samantha	Rh6AG125400 Rh6BG121700 Rh6CG120000 Rh6DG107800
rosa_wichuraiana	Rw0G005270 Rw6G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	242, 291
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	10, 196, 220, 361
AjnI	CCWGG	2 cut(s)	75, 474
AluBI	AGCT	9 cut(s)	14, 42, 67, 104, 130, 149, 320, 335, 434
AluI	AGCT	9 cut(s)	14, 42, 67, 104, 130, 149, 320, 335, 434
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	366, 449
ApeKI	GCWGC	3 cut(s)	130, 133, 332
ApoI	RAATTY	2 cut(s)	242, 291
AspS9I	GGNCC	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	117, 120, 344
BccI	CCATC	2 cut(s)	221, 302
BciT130I	CCWGG	2 cut(s)	77, 476
BciVI	GTATCC	1 cut(s)	477
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	3 cut(s)	131, 134, 333
BlsI	GCNGC	3 cut(s)	132, 135, 334
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	77, 476
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	449
BmrFI	CCNGG	2 cut(s)	77, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseBI	CCWGG	2 cut(s)	77, 476
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	117, 120, 344
BshFI	GGCC	2 cut(s)	368, 451
BsiHKCI	CYCGRG	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	2 cut(s)	368, 451
BsoBI	CYCGRG	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	268, 382
BspANI	GGCC	2 cut(s)	368, 451
BspCNI	CTCAG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	138
BssMI	GATC	2 cut(s)	268, 382
Bst2UI	CCWGG	2 cut(s)	77, 476
Bst6I	CTCTTC	2 cut(s)	384, 495
BstC8I	GCNNGC	2 cut(s)	65, 238
BstDEI	CTNAG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	2 cut(s)	271, 385
BstMBI	GATC	2 cut(s)	268, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 431
BstNI	CCWGG	2 cut(s)	77, 476
BstSCI	CCNGG	2 cut(s)	75, 474
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	117, 120, 344
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	368, 451
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	65, 238
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	3 cut(s)	280, 386, 415
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	2 cut(s)	270, 384
DpnII	GATC	2 cut(s)	268, 382
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	384, 495
EarI	CTCTTC	2 cut(s)	384, 495
Eco88I	CYCGRG	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	75, 474
FaeI	CATG	3 cut(s)	283, 389, 418
FaiI	YATR	7 cut(s)	177, 255, 281, 387, 416, 467, 498
FatI	CATG	3 cut(s)	279, 385, 414
Fnu4HI	GCNGC	3 cut(s)	131, 134, 333
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	3 cut(s)	131, 134, 333
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	3 cut(s)	131, 134, 333
HaeIII	GGCC	2 cut(s)	368, 451
Hin1II	CATG	3 cut(s)	283, 389, 418
HindIII	AAGCTT	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	3 cut(s)	217, 287, 386
HpyAV	CCTTC	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	136, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 431
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	283, 389, 418
Kzo9I	GATC	2 cut(s)	268, 382
LpnPI	CCDG	8 cut(s)	11, 62, 89, 272, 461, 465, 471, 488
Lsp1109I	GCAGC	3 cut(s)	117, 120, 344
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	71, 322
MalI	GATC	2 cut(s)	270, 384
MboI	GATC	2 cut(s)	268, 382
MboII	GAAGA	4 cut(s)	110, 208, 269, 401
MfeI	CAATTG	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	5 cut(s)	55, 81, 123, 242, 291
MluNI	TGGCCA	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	3 cut(s)	182, 415, 440
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	2 cut(s)	54, 246
Msp20I	TGGCCA	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	77, 476
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	77, 476
MwoI	GCNNNNNNNGC	2 cut(s)	139, 431
NdeII	GATC	2 cut(s)	268, 382
NlaIII	CATG	3 cut(s)	283, 389, 418
PaeR7I	CTCGAG	1 cut(s)	37
PagI	TCATGA	1 cut(s)	385
PkrI	GCNGC	3 cut(s)	132, 135, 334
Psp6I	CCWGG	2 cut(s)	75, 474
PspGI	CCWGG	2 cut(s)	75, 474
PspPI	GGNCC	1 cut(s)	449
PspXI	VCTCGAGB	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	54, 246
SatI	GCNGC	3 cut(s)	131, 134, 333
Sau3AI	GATC	2 cut(s)	268, 382
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	77, 476
SfcI	CTRYAG	1 cut(s)	134
Sfr274I	CTCGAG	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	5 cut(s)	55, 81, 123, 242, 291
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	75, 474
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	38
TasI	AATT	5 cut(s)	55, 81, 123, 242, 291
TatI	WGTACW	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	54, 246
Tru9I	TTAA	2 cut(s)	54, 246
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	3 cut(s)	130, 133, 332
TspDTI	ATGAA	2 cut(s)	270, 402
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	2 cut(s)	242, 291
XhoI	CTCGAG	1 cut(s)	37
XspI	CTAG	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.