Rorug06G0006000

Dehydrodolichyl diphosphate syntase complex subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
789895 .. 956141
166247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0006000.1

Sequence Viewer

Length: 1947 bp
ATGAGCACAGAGAGCTCCTCAACTCCTCGGTGGAAATATGATGTCTTTTTGAGTTTTAGAGGCGAGGATACTCGAAAGGGTTTTACAGACCATTTATACACTGCATTGGATCATCAAGGAATCATAACTTTCAGGGATGATCCTCAACTTCACAAAGGGGAAGCTATTTCTCCAGCACTTTTTGCTGCAATTGAAGAATCAAGATTTGCTCTCATTGTTCTCTCACAAAATTATGCATCGTCAACTTGGTGCTTGGATGAACTTGTAAGAATTCTTGAATGCATGAAAGCAAGAGAAACGGTGCTGCCAATTTTCTATGACGTTGATCCCTCTGATGTACGAAAGCAAACAGGGAGTTTTAAAGAAGCTTTCATTGATCATGAAGAAAGGTTTAAGGACGATAAAGAGAAGGTGCAAAGATGGAGATCTGCTTTAACTGAATTCGCGAGTTTCTCTGGTTGGAATTCAAAGGAATGGTATGAATCAATGCTCATTAGAGATATTGTTGAAGTTATATGGAAAAAACTGCAACCTACATTATTCACTTTTGCAGAAAATCTTGTTGGAATTTATTCAAGATTACAGCCGCTCAATTTTCTTTTAGGTGTAGGGGTGGATGACGTTCGTTTCATTGGGATATGGGGAATGGGCGGGATTGGTAAGACAACTATGGTAAGAGCGGTGTATGAGAGAATCTCTTGTGAATTTGAATTTAGTTTCCTTCTTACCAATGTTAGAAACTCTGTTGAAAAAAGTGGTCTACTTAATCTACAAAAGCAACTTCTCTCTGGGATTTGGACAAAAATGTCTGACATATCAGACCTTTATGAAGGAGCTGCCATAATAAGGAGGTTGTTAGGTCACAAAAAGGTTCTTCTCATTCTTGATGATGTAAACCATTCAAGCCATTTGAAATATTTGGCAGGAAGTGAAGAGTGGTTTGGTTCAGGGAGTAGAGTTCTCATCACATCTAGAAATGAGCACTTATTGATCGAACATGGAGTGGAGAGAAGATTGAAGGTTAAGGAATTTAATGATGAGGAATCTCTTCAGCTTTTCAGCTGGAAAGCATTCAAACGAGATTACCCTGAAGAAGATTTTCTTGATTTGTCTAAATCTGTCATAAATTATGCCAAAGGTCTCCCTTTAGCTCTTGAAGTACTGGGCTCGTTTTTGCATGGAAGGGATCTAAGTGAATGGAATTGTGCATTGAGAAAACTAGGAAGAGTTTGTAACTTGGAAATTTTTGACATACTTAAAACAAGTTATGATGGTCTAGATGATGAAGAGAAGAAAATATTCCTAGACATTTCATGCTTCTTTTGTGGAGAGGACAAAGATAGAGTAACAGAAGTACTGATTAGTTGCGATGTTTCTGCGATTATTGGAATAAAAGTGCTTACCGAAAGATCTCTCTTGACTGTTTCATTTGGAAGACTACAAATGCACGATTTGCTCCAAGAAATGGGTCGGGAAATTGTCCGCCGAGAATCTACTAATGAGCCAGGTAGGCGCAGTAGGTTATGGCTTCTTGAAGACATCAAACACGTCTTGACCAAAAATACTGGAACAGAAGCAATAGAAGGCATTGTTCTGGACTCAACTGAGCTCGGAGTAAAGGTGGAGGTGAATGCTAAATCCTTTTCAATGATGAACAGATTGAGATATCTTGTCATTAAGAATGGTAACCTACCGAATGGGCTTGAATGTCTTCCCAATAGTTTACGGATTCTTAAATGGACTAGGTATCCCGCGAAATCTCTCCCATCACATTTCAACCCTGAAAAGCTACTAGAACTGAACATGCGCCATAGTCGCATTGAACATTTTCCTTTGGAAATAGAGGTATCAAGTACTTGCATAATATTTGATTACTTACAGAAGAAATTGTTGAATATAAAAGCTAATTTTCTTATGCTTTTACTGGACAGCATTTATACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

648

Amino Acids

74.67

Weight (kDa)

6.01

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 12 - 180 8.8e-54 TIR domain
TIR_2 PF13676 15 - 111 1.8e-14 TIR domain
NB-ARC PF00931 206 - 360 8.9e-19 NB-ARC domain
WHD_ROQ1 PF23282 428 - 498 1.4e-18 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 805
AccB7I CCANNNNNTGG 1 cut(s) 1465
AccBSI CCGCTC 2 cut(s) 589, 680
AccI GTMKAC 1 cut(s) 760
AccII CGCG 2 cut(s) 446, 1754
AciI CCGC 5 cut(s) 587, 651, 680, 1483, 1752
AclWI GGATC 4 cut(s) 117, 134, 320, 1194
AcsI RAATTY 8 cut(s) 270, 440, 463, 567, 704, 710, 1028, 1242
AcuI CTGAAG 2 cut(s) 1034, 1110
AfaI GTAC 4 cut(s) 339, 1161, 1356, 1855
AfiI CCNNNNNNNGG 2 cut(s) 846, 1465
AflIII ACRYGT 1 cut(s) 1546
AjiI CACGTC 1 cut(s) 1549
AjnI CCWGG 1 cut(s) 1504
AjuI GAANNNNNNNTTGG 4 cut(s) 546, 578, 924, 956
Alw21I GWGCWC 4 cut(s) 8, 17, 984, 1611
Alw26I GTCTC 1 cut(s) 1145
AlwI GGATC 4 cut(s) 117, 134, 320, 1194
ApeKI GCWGC 3 cut(s) 185, 304, 836
ApoI RAATTY 8 cut(s) 270, 440, 463, 567, 704, 710, 1028, 1242
Asp700I GAANNNNTTC 7 cut(s) 571, 1047, 1070, 1098, 1298, 1710, 1827
AspLEI GCGC 2 cut(s) 1515, 1809
AsuHPI GGTGA 1 cut(s) 1639
BanII GRGCYC 3 cut(s) 17, 1169, 1611
BbsI GAAGAC 3 cut(s) 1441, 1542, 1703
Bbv12I GWGCWC 4 cut(s) 8, 17, 984, 1611
BbvI GCAGC 3 cut(s) 172, 291, 823
BccI CCATC 3 cut(s) 414, 1265, 1774
BcgI CGANNNNNNTGC 2 cut(s) 1358, 1392
BciT130I CCWGG 1 cut(s) 1506
BciVI GTATCC 2 cut(s) 61, 1758
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 1145
BfaI CTAG 6 cut(s) 972, 1220, 1277, 1304, 1743, 1793
BfuI GTATCC 2 cut(s) 61, 1758
BglI GCCNNNNNGGC 1 cut(s) 1510
BglII AGATCT 2 cut(s) 425, 1409
BisI GCNGC 4 cut(s) 186, 305, 587, 837
BlsI GCNGC 4 cut(s) 187, 306, 588, 838
BmcAI AGTACT 3 cut(s) 1161, 1356, 1855
Bme1390I CCNGG 1 cut(s) 1506
BmgBI CACGTC 1 cut(s) 1549
BmrFI CCNGG 1 cut(s) 1506
BmrI ACTGGG 1 cut(s) 1172
BmsI GCATC 1 cut(s) 245
BmuI ACTGGG 1 cut(s) 1172
BpiI GAAGAC 3 cut(s) 1441, 1542, 1703
BplI GAGNNNNNCTC 3 cut(s) 34, 680, 712
BpmI CTGGAG 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 424
BsaI GGTCTC 1 cut(s) 1145
BsaJI CCNNGG 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 1605, 1635
Bsc4I CCNNNNNNNGG 2 cut(s) 846, 1465
Bse1I ACTGG 3 cut(s) 1167, 1570, 1929
Bse8I GATNNNNATC 1 cut(s) 424
BseBI CCWGG 1 cut(s) 1506
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 3 cut(s) 142, 262, 622
BseJI GATNNNNATC 1 cut(s) 424
BseLI CCNNNNNNNGG 2 cut(s) 846, 1465
BseMII CTCAG 1 cut(s) 1596
BseNI ACTGG 3 cut(s) 1167, 1570, 1929
BseRI GAGGAG 2 cut(s) 7, 15
BseXI GCAGC 3 cut(s) 172, 291, 823
Bsh1236I CGCG 2 cut(s) 446, 1754
BsiHKAI GWGCWC 4 cut(s) 8, 17, 984, 1611
BslI CCNNNNNNNGG 2 cut(s) 846, 1465
BsmAI GTCTC 1 cut(s) 1145
BsmI GAATGC 3 cut(s) 284, 1070, 1636
Bso31I GGTCTC 1 cut(s) 1145
Bsp1286I GDGCHC 5 cut(s) 8, 17, 984, 1169, 1611
Bsp143I GATC 8 cut(s) 109, 139, 325, 376, 425, 990, 1186, 1409
Bsp68I TCGCGA 1 cut(s) 446
BspACI CCGC 5 cut(s) 587, 651, 680, 1483, 1752
BspCNI CTCAG 1 cut(s) 1597
BspFNI CGCG 2 cut(s) 446, 1754
BspHI TCATGA 1 cut(s) 379
BspPI GGATC 4 cut(s) 117, 134, 320, 1194
BspTNI GGTCTC 1 cut(s) 1145
BsrBI CCGCTC 2 cut(s) 589, 680
BsrI ACTGG 3 cut(s) 1167, 1570, 1929
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 8 cut(s) 109, 139, 325, 376, 425, 990, 1186, 1409
Bst2UI CCWGG 1 cut(s) 1506
Bst4CI ACNGT 2 cut(s) 301, 1423
Bst6I CTCTTC 4 cut(s) 927, 1053, 1219, 1281
BstAPI GCANNNNNTGC 2 cut(s) 182, 1453
BstDEI CTNAG 2 cut(s) 1190, 1605
BstEII GGTNACC 1 cut(s) 1685
BstF5I GGATG 3 cut(s) 142, 262, 622
BstFNI CGCG 2 cut(s) 446, 1754
BstHHI GCGC 2 cut(s) 1515, 1809
BstKTI GATC 8 cut(s) 112, 142, 328, 379, 428, 993, 1189, 1412
BstMAI GTCTC 1 cut(s) 1145
BstMBI GATC 8 cut(s) 109, 139, 325, 376, 425, 990, 1186, 1409
BstMWI GCNNNNNNNGC 5 cut(s) 12, 182, 1453, 1510, 1815
BstNI CCWGG 1 cut(s) 1506
BstNSI RCATGY 1 cut(s) 1807
BstPI GGTNACC 1 cut(s) 1685
BstSCI CCNGG 1 cut(s) 1504
BstUI CGCG 2 cut(s) 446, 1754
BstV1I GCAGC 3 cut(s) 172, 291, 823
BstV2I GAAGAC 3 cut(s) 1441, 1542, 1703
BstX2I RGATCY 3 cut(s) 425, 1186, 1409
BstYI RGATCY 3 cut(s) 425, 1186, 1409
BsuI GTATCC 2 cut(s) 61, 1758
BtgZI GCGATG 1 cut(s) 1383
BtrI CACGTC 1 cut(s) 1549
BtsCI GGATG 3 cut(s) 142, 262, 622
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
BtuMI TCGCGA 1 cut(s) 446
CciI TCATGA 1 cut(s) 379
CfoI GCGC 2 cut(s) 1515, 1809
Csp6I GTAC 4 cut(s) 338, 1160, 1355, 1854
CviAII CATG 6 cut(s) 283, 380, 998, 1178, 1314, 1804
CviQI GTAC 4 cut(s) 338, 1160, 1355, 1854
DdeI CTNAG 2 cut(s) 1190, 1605
DpnI GATC 8 cut(s) 111, 141, 327, 378, 427, 992, 1188, 1411
DpnII GATC 8 cut(s) 109, 139, 325, 376, 425, 990, 1186, 1409
DraI TTTAAA 1 cut(s) 361
DrdI GACNNNNNNGTC 1 cut(s) 805
DseDI GACNNNNNNGTC 1 cut(s) 805
Eam1104I CTCTTC 4 cut(s) 927, 1053, 1219, 1281
EarI CTCTTC 4 cut(s) 927, 1053, 1219, 1281
EciI GGCGGA 1 cut(s) 1472
Ecl136II GAGCTC 2 cut(s) 15, 1609
Eco24I GRGCYC 3 cut(s) 17, 1169, 1611
Eco31I GGTCTC 1 cut(s) 1145
Eco32I GATATC 1 cut(s) 1667
Eco53kI GAGCTC 2 cut(s) 15, 1609
Eco57I CTGAAG 2 cut(s) 1034, 1110
Eco91I GGTNACC 1 cut(s) 1685
EcoICRI GAGCTC 2 cut(s) 15, 1609
EcoO65I GGTNACC 1 cut(s) 1685
EcoRI GAATTC 3 cut(s) 270, 440, 463
EcoRII CCWGG 1 cut(s) 1504
EcoRV GATATC 1 cut(s) 1667
EcoT22I ATGCAT 2 cut(s) 238, 284
EcoT38I GRGCYC 3 cut(s) 17, 1169, 1611
FaeI CATG 6 cut(s) 286, 383, 1001, 1181, 1317, 1807
FalI AAGNNNNNCTT 2 cut(s) 1086, 1118
FatI CATG 6 cut(s) 282, 379, 997, 1177, 1313, 1803
FauI CCCGC 2 cut(s) 644, 1759
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 760
Fnu4HI GCNGC 4 cut(s) 186, 305, 587, 837
FokI GGATG 3 cut(s) 149, 269, 629
FriOI GRGCYC 3 cut(s) 17, 1169, 1611
Fsp4HI GCNGC 4 cut(s) 186, 305, 587, 837
FspBI CTAG 6 cut(s) 972, 1220, 1277, 1304, 1743, 1793
GlaI GCGC 2 cut(s) 1514, 1808
GluI GCNGC 4 cut(s) 186, 305, 587, 837
GsuI CTGGAG 1 cut(s) 156
HhaI GCGC 2 cut(s) 1515, 1809
Hin1II CATG 6 cut(s) 286, 383, 1001, 1181, 1317, 1807
Hin6I GCGC 2 cut(s) 1513, 1807
HinP1I GCGC 2 cut(s) 1513, 1807
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 8 cut(s) 120, 197, 482, 693, 1043, 1490, 1598, 1729
HphI GGTGA 1 cut(s) 1639
Hpy166II GTNNAC 4 cut(s) 243, 761, 895, 1724
Hpy188I TCNGA 4 cut(s) 334, 811, 820, 1613
Hpy8I GTNNAC 4 cut(s) 243, 761, 895, 1724
HpyAV CCTTC 6 cut(s) 403, 731, 824, 1012, 1176, 1577
HpyCH4III ACNGT 2 cut(s) 301, 1423
HpyCH4IV ACGT 3 cut(s) 321, 621, 1548
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 182, 1453, 1510, 1815
HpyF3I CTNAG 2 cut(s) 1190, 1605
HpySE526I ACGT 3 cut(s) 321, 621, 1548
Hsp92II CATG 6 cut(s) 286, 383, 1001, 1181, 1317, 1807
HspAI GCGC 2 cut(s) 1513, 1807
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 8 cut(s) 109, 139, 325, 376, 425, 990, 1186, 1409
LmnI GCTCC 3 cut(s) 20, 833, 1461
Lsp1109I GCAGC 3 cut(s) 172, 291, 823
LweI GCATC 1 cut(s) 245
MaeI CTAG 6 cut(s) 972, 1220, 1277, 1304, 1743, 1793
MaeII ACGT 3 cut(s) 321, 621, 1548
MaeIII GTNAC 4 cut(s) 860, 1232, 1345, 1685
MalI GATC 8 cut(s) 111, 141, 327, 378, 427, 992, 1188, 1411
MbiI CCGCTC 2 cut(s) 589, 680
MboI GATC 8 cut(s) 109, 139, 325, 376, 425, 990, 1186, 1409
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 3 cut(s) 425, 1186, 1409
MhlI GDGCHC 5 cut(s) 8, 17, 984, 1169, 1611
MlyI GAGTC 1 cut(s) 1592
MmeI TCCRAC 2 cut(s) 440, 544
Mph1103I ATGCAT 2 cut(s) 238, 284
MroXI GAANNNNTTC 7 cut(s) 571, 1047, 1070, 1098, 1298, 1710, 1827
MseI TTAA 9 cut(s) 360, 393, 434, 765, 1023, 1032, 1257, 1677, 1734
MspA1I CMGCKG 1 cut(s) 1062
MspR9I CCNGG 1 cut(s) 1506
MunI CAATTG 1 cut(s) 189
Mva1269I GAATGC 3 cut(s) 284, 1070, 1636
MvaI CCWGG 1 cut(s) 1506
MvnI CGCG 2 cut(s) 446, 1754
MwoI GCNNNNNNNGC 5 cut(s) 12, 182, 1453, 1510, 1815
NdeII GATC 8 cut(s) 109, 139, 325, 376, 425, 990, 1186, 1409
NlaIII CATG 6 cut(s) 286, 383, 1001, 1181, 1317, 1807
NmeAIII GCCGAG 1 cut(s) 1511
NmuCI GTSAC 1 cut(s) 860
NruI TCGCGA 1 cut(s) 446
NsiI ATGCAT 2 cut(s) 238, 284
NspI RCATGY 1 cut(s) 1807
PagI TCATGA 1 cut(s) 379
PctI GAATGC 3 cut(s) 284, 1070, 1636
PdmI GAANNNNTTC 7 cut(s) 571, 1047, 1070, 1098, 1298, 1710, 1827
PfeI GAWTC 7 cut(s) 120, 197, 482, 693, 1043, 1490, 1729
PflMI CCANNNNNTGG 1 cut(s) 1465
PkrI GCNGC 4 cut(s) 187, 306, 588, 838
PleI GAGTC 1 cut(s) 1592
PpsI GAGTC 1 cut(s) 1592
Psp124BI GAGCTC 2 cut(s) 17, 1611
Psp6I CCWGG 1 cut(s) 1504
PspEI GGTNACC 1 cut(s) 1685
PspGI CCWGG 1 cut(s) 1504
PsuI RGATCY 3 cut(s) 425, 1186, 1409
PvuII CAGCTG 1 cut(s) 1062
RruI TCGCGA 1 cut(s) 446
RsaI GTAC 4 cut(s) 339, 1161, 1356, 1855
RsaNI GTAC 4 cut(s) 338, 1160, 1355, 1854
SacI GAGCTC 2 cut(s) 17, 1611
SaqAI TTAA 9 cut(s) 360, 393, 434, 765, 1023, 1032, 1257, 1677, 1734
SatI GCNGC 4 cut(s) 186, 305, 587, 837
Sau3AI GATC 8 cut(s) 109, 139, 325, 376, 425, 990, 1186, 1409
ScaI AGTACT 3 cut(s) 1161, 1356, 1855
SchI GAGTC 1 cut(s) 1592
ScrFI CCNGG 1 cut(s) 1506
SduI GDGCHC 5 cut(s) 8, 17, 984, 1169, 1611
SfaNI GCATC 1 cut(s) 245
SsiI CCGC 5 cut(s) 587, 651, 680, 1483, 1752
SspI AATATT 3 cut(s) 917, 1299, 1866
SspMI CTAG 6 cut(s) 972, 1220, 1277, 1304, 1743, 1793
SstI GAGCTC 2 cut(s) 17, 1611
StyD4I CCNGG 1 cut(s) 1504
TaaI ACNGT 2 cut(s) 301, 1423
TaiI ACGT 3 cut(s) 324, 624, 1551
TaqI TCGA 2 cut(s) 73, 993
TatI WGTACW 3 cut(s) 1159, 1354, 1853
TauI GCSGC 1 cut(s) 589
TfiI GAWTC 7 cut(s) 120, 197, 482, 693, 1043, 1490, 1729
Tru1I TTAA 9 cut(s) 360, 393, 434, 765, 1023, 1032, 1257, 1677, 1734
Tru9I TTAA 9 cut(s) 360, 393, 434, 765, 1023, 1032, 1257, 1677, 1734
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 3 cut(s) 185, 304, 836
Tsp45I GTSAC 1 cut(s) 860
TspGWI ACGGA 1 cut(s) 1741
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 1465
XapI RAATTY 8 cut(s) 270, 440, 463, 567, 704, 710, 1028, 1242
XbaI TCTAGA 2 cut(s) 971, 1276
XceI RCATGY 1 cut(s) 1807
XmiI GTMKAC 1 cut(s) 760
XmnI GAANNNNTTC 7 cut(s) 571, 1047, 1070, 1098, 1298, 1710, 1827
XspI CTAG 6 cut(s) 972, 1220, 1277, 1304, 1743, 1793
ZrmI AGTACT 3 cut(s) 1161, 1356, 1855
Zsp2I ATGCAT 2 cut(s) 238, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.