Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010111

Physical Location & Seq

Genomic Coordinates Reverse (-)

7361334 .. 7366019

Gene Structure 4686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08440.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGATTTGAGGATTGAAATGCAGAGGGCAACCACTTTTGCTTCTCAAACCGGCAATCTTGGGCTACTGCTCCTCTGGCATATTCTGCATCTTTTTGTCAGACTATGGTACTTCGTGTTGCAGTTGGCTTATGTGCTCGAGAGCTATCTTATTTCCGGTGGAGTACTTAAGAGGTATAAAGCCCTCAATGTAGGTAAACTAAGGTACCTGGCAATTGTAGTTGAAAGTGAAGACGCGTACGAAACTTCCAAAGTTATTGAGCTTCTGCAGTGGTTAGAAGCTATTGGTGTGAAATGTGTGTGCCTCTACGACACAGAAGGAGTATTGAAGAAATCAAAAGAAGTCATCTTGACAAAACTGAAAAATGCAACAGTATTTGAGGAAGGTTATAAAGATGAAAGCTTTGTTGACCAAAAACGCATGTCTCTAGAATTTTCTTCATTCTCTGATGGAAAAGAAGCTATAACCAAAGCAGCTAACTTGCTCTTTGTGAAGTATTTGAAATTGGCTACACTACCTGGTCATCATGAAGAGAAAATCTTTACAGAACCTCACATGGATGATGCACTTAGAGCTATTGGTCGCAGGGGGCCGGACCCTGACCTCCTATTAGTTTATGGACCTGCAAGATGCCACCTTGGCTTTCCTGCATGGAGAATGCGATATACTGAGATTGTACACATGGGTCAACTAAAGCATATGAGATACGGTTCCCTAATTAAAGCCATTTACAAGTTCACCACTGTGCGCCAAAACTATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

29.37

Weight (kDa)

9.14

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11755
fragaria_vesca	FvH4_2g08440 FvH4_2g08440 FvH4_2g08440
malus_domestica	MD10G1078800.v1.1
prunus_persica	Prupe.8G100600_v2.0.a1 Prupe.8G100800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263721
rosa_laevigata	RLG00000014319
rosa_multiflora	Rmu_sc0003570.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431180 Rroxscaffold_7G00204010
rosa_rugosa	Rorug06G0005800 Rorug06G0005900 Rorug06G0006000
rosa_samantha	Rh6AG125400 Rh6BG121700 Rh6CG120000 Rh6DG107800
rosa_wichuraiana	Rw0G005270 Rw6G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	631
Acc65I	GGTACC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	431
AfaI	GTAC	5 cut(s)	110, 165, 206, 239, 678
AflII	CTTAAG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	17, 224, 328, 502
AjnI	CCWGG	2 cut(s)	207, 517
AleI	CACNNNNGTG	1 cut(s)	743
AluBI	AGCT	7 cut(s)	144, 262, 281, 402, 461, 476, 575
AluI	AGCT	7 cut(s)	144, 262, 281, 402, 461, 476, 575
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	429
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	590
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	1 cut(s)	431
Asp718I	GGTACC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	750
AspS9I	GGNCC	3 cut(s)	590, 595, 620
AsuHPI	GGTGA	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	595, 620
BaeI	ACNNNNGTAYC	2 cut(s)	188, 221
BanI	GGYRCC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	2 cut(s)	209, 519
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	266
BfrI	CTTAAG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	639
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	209, 519
Bme18I	GGWCC	2 cut(s)	595, 620
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	590, 595, 620
BmiI	GGNNCC	4 cut(s)	206, 591, 597, 712
BmrFI	CCNGG	2 cut(s)	209, 519
BmsI	GCATC	3 cut(s)	97, 553, 620
BpiI	GAAGAC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	637
BsaWI	WCCGGW	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	209, 519
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	1 cut(s)	565
BseMII	CTCAG	1 cut(s)	660
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	592
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	51, 156, 593
BsiWI	CGTACG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	663
BsnI	GGCC	1 cut(s)	592
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp1407I	TGTACA	1 cut(s)	676
BspANI	GGCC	1 cut(s)	592
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	4 cut(s)	206, 591, 597, 712
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	204
BspTI	CTTAAG	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	676
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	637
Bst2UI	CCWGG	2 cut(s)	209, 519
Bst4CI	ACNGT	3 cut(s)	373, 710, 745
Bst6I	CTCTTC	1 cut(s)	525
BstAFI	CTTAAG	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstAUI	TGTACA	1 cut(s)	676
BstDEI	CTNAG	3 cut(s)	200, 569, 669
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	750
BstMAI	GTCTC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 85, 572, 639
BstNI	CCWGG	2 cut(s)	209, 519
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	207, 517
BstSFI	CTRYAG	1 cut(s)	266
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	565
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	275, 741
BveI	ACCTGC	1 cut(s)	631
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	1 cut(s)	750
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	590, 595, 620
CseI	GACGC	1 cut(s)	242
CsiI	ACCWGGT	1 cut(s)	517
Csp6I	GTAC	5 cut(s)	109, 164, 205, 238, 677
CviAII	CATG	5 cut(s)	421, 527, 556, 651, 682
CviQI	GTAC	5 cut(s)	109, 164, 205, 238, 677
DdeI	CTNAG	3 cut(s)	200, 569, 669
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	637
Eco47I	GGWCC	2 cut(s)	595, 620
Eco88I	CYCGRG	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	207, 517
EcoT14I	CCWWGG	1 cut(s)	637
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	5 cut(s)	424, 530, 559, 654, 685
FatI	CATG	5 cut(s)	420, 526, 555, 650, 681
FauNDI	CATATG	1 cut(s)	699
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	592
HapII	CCGG	3 cut(s)	51, 156, 593
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	750
Hin1II	CATG	5 cut(s)	424, 530, 559, 654, 685
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HincII	GTYRAC	2 cut(s)	409, 689
HindII	GTYRAC	2 cut(s)	409, 689
HindIII	AAGCTT	1 cut(s)	400
HpaII	CCGG	3 cut(s)	51, 156, 593
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	5 cut(s)	197, 409, 679, 689, 738
Hpy188I	TCNGA	2 cut(s)	101, 448
Hpy188III	TCNNGA	4 cut(s)	139, 349, 428, 527
Hpy8I	GTNNAC	5 cut(s)	197, 409, 679, 689, 738
HpyAV	CCTTC	2 cut(s)	311, 377
HpyCH4III	ACNGT	3 cut(s)	373, 710, 745
HpyCH4V	TGCA	8 cut(s)	22, 88, 121, 268, 368, 566, 626, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 85, 572, 639
HpyF3I	CTNAG	3 cut(s)	200, 569, 669
Hsp92II	CATG	5 cut(s)	424, 530, 559, 654, 685
HspAI	GCGC	1 cut(s)	748
KpnI	GGTACC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	3 cut(s)	97, 553, 620
MabI	ACCWGGT	1 cut(s)	517
MaeI	CTAG	1 cut(s)	428
MboII	GAAGA	4 cut(s)	242, 340, 429, 542
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	4 cut(s)	213, 431, 503, 717
MluI	ACGCGT	1 cut(s)	234
MnlI	CCTC	9 cut(s)	3, 18, 83, 165, 194, 314, 373, 561, 614
MseI	TTAA	2 cut(s)	168, 720
MslI	CAYNNNNRTG	2 cut(s)	558, 743
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	3 cut(s)	51, 156, 593
MspR9I	CCNGG	2 cut(s)	209, 519
MunI	CAATTG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	663
MvaI	CCWGG	2 cut(s)	209, 519
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	4 cut(s)	76, 85, 572, 639
NdeI	CATATG	1 cut(s)	699
NlaIII	CATG	5 cut(s)	424, 530, 559, 654, 685
NlaIV	GGNNCC	4 cut(s)	206, 591, 597, 712
NspI	RCATGY	1 cut(s)	424
OliI	CACNNNNGTG	1 cut(s)	743
PaeR7I	CTCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	526
PctI	GAATGC	1 cut(s)	663
Pfl23II	CGTACG	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	475
PsiI	TTATAA	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	207, 517
PspGI	CCWGG	2 cut(s)	207, 517
PspLI	CGTACG	1 cut(s)	237
PspN4I	GGNNCC	4 cut(s)	206, 591, 597, 712
PspPI	GGNCC	3 cut(s)	590, 595, 620
PstI	CTGCAG	1 cut(s)	270
RsaI	GTAC	5 cut(s)	110, 165, 206, 239, 678
RsaNI	GTAC	5 cut(s)	109, 164, 205, 238, 677
RseI	CAYNNNNRTG	2 cut(s)	558, 743
SaqAI	TTAA	2 cut(s)	168, 720
SatI	GCNGC	1 cut(s)	474
Sau96I	GGNCC	3 cut(s)	590, 595, 620
ScaI	AGTACT	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	209, 519
SduI	GDGCHC	1 cut(s)	138
SexAI	ACCWGGT	1 cut(s)	517
SfaNI	GCATC	3 cut(s)	97, 553, 620
SfcI	CTRYAG	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	2 cut(s)	595, 620
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	558, 743
SmlI	CTYRAG	2 cut(s)	137, 167
SmoI	CTYRAG	2 cut(s)	137, 167
Sse9I	AATT	4 cut(s)	213, 431, 503, 717
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	207, 517
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	3 cut(s)	373, 710, 745
TaqI	TCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	213, 431, 503, 717
TatI	WGTACW	2 cut(s)	163, 676
Tru1I	TTAA	2 cut(s)	168, 720
Tru9I	TTAA	2 cut(s)	168, 720
TscAI	CASTG	2 cut(s)	275, 748
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	3 cut(s)	411, 429, 543
TspRI	CASTG	2 cut(s)	275, 748
Vha464I	CTTAAG	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	595, 620
XapI	RAATTY	1 cut(s)	431
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	137
XspI	CTAG	1 cut(s)	428
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.