Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010111

Physical Location & Seq

Genomic Coordinates Forward (+)

51282667 .. 51286989

Gene Structure 4323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCAATGGCTTTGCTGCTCTTTGCTCACTCAAAAACTCACTAAATTTTCTTTCTGGGTTTCTCTCTATCTTTTTGAGCTAATGGATTTGAAGATTCAAATGCAGAGGGCAAGGGCAACCTCGTTTGCTACTCAAACTGGCAATCTTGGGCTACTGCTCCTCTGGCATATTCTGCATCTTTTTATCAGACTATGGTACTTTCTGTGTTGGATGGTTTATGTGCTTGAGAGCTATCTCATTTCTGGTGGAATACTTAAGAAGTATAAAGCCCTTAACATAGGTAAACTACGGTACCTGGCGATTGTAGTAGAAAGTGAAGACGCATACGAAACTTCCAAAGTTATTGAGCTTCTGCAGTGGCTAGAAGCTATTGGCGTGAAACGTGTGTGCCTCTACGACACAGAAGGAGTGTTGAAGAAATCAAAAGAAGTCATCTTGACAAAACTGAAAAATGCAGTAGTATATGAGGAAGGTTATCAAGATGAAAGCTTAGTTGACCAAAAACGCATGTCTCTAGAATTTTGTTCATTCTCTGATGGAAAAGAAGCTATAACCAAAGCAGCTAACTTGCTCTTTGCGAAGTATTTGAAATTGGCGACACTACCTGGTGATCATGAAGAGAAAATCTTTACAGAACCTCACATGGATGATGCACTTAAGGCTATTGGTGGCAGAGGGCCGGACCCTGACCTCCTATTAGTTTATGGACCTGCAAGATGCCACCTTGGTTTTCCTGCATGGAGAATGCGATATACTGAGATTGTACACATGGGTCAGCTAAAGCATATGAGATACGGTTCCCTAATTAAAGCCATTTACAGGTTCACCACTGTGCGCCAAAACTATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

32.91

Weight (kDa)

9.03

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11755
fragaria_vesca	FvH4_2g08440 FvH4_2g08440 FvH4_2g08440
malus_domestica	MD10G1078800.v1.1
prunus_persica	Prupe.8G100600_v2.0.a1 Prupe.8G100800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263721
rosa_laevigata	RLG00000014319
rosa_multiflora	Rmu_sc0003570.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431180 Rroxscaffold_7G00204010
rosa_rugosa	Rorug06G0005800 Rorug06G0005900 Rorug06G0006000
rosa_samantha	Rh6AG125400 Rh6BG121700 Rh6CG120000 Rh6DG107800
rosa_wichuraiana	Rw0G005270 Rw6G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	718
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	44, 518
AfaI	GTAC	3 cut(s)	197, 293, 765
AfiI	CCNNNNNNNGG	1 cut(s)	819
AflII	CTTAAG	2 cut(s)	254, 656
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	4 cut(s)	91, 98, 415, 589
AjnI	CCWGG	2 cut(s)	294, 604
AleI	CACNNNNGTG	1 cut(s)	830
AluBI	AGCT	8 cut(s)	79, 231, 349, 368, 489, 548, 563, 778
AluI	AGCT	8 cut(s)	79, 231, 349, 368, 489, 548, 563, 778
Alw26I	GTCTC	1 cut(s)	516
AoxI	GGCC	1 cut(s)	677
ApeKI	GCWGC	2 cut(s)	15, 560
ApoI	RAATTY	2 cut(s)	44, 518
Asp718I	GGTACC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	837
AspS9I	GGNCC	3 cut(s)	677, 682, 707
AsuHPI	GGTGA	2 cut(s)	620, 817
AvaII	GGWCC	2 cut(s)	682, 707
BaeI	ACNNNNGTAYC	2 cut(s)	275, 308
BanI	GGYRCC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	2, 572
BccI	CCATC	2 cut(s)	205, 530
BciT130I	CCWGG	2 cut(s)	296, 606
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	2 cut(s)	362, 515
BfmI	CTRYAG	1 cut(s)	353
BfrI	CTTAAG	2 cut(s)	254, 656
BfuAI	ACCTGC	1 cut(s)	718
BisI	GCNGC	2 cut(s)	16, 561
BlsI	GCNGC	2 cut(s)	17, 562
Bme1390I	CCNGG	2 cut(s)	296, 606
Bme18I	GGWCC	2 cut(s)	682, 707
BmgT120I	GGNCC	3 cut(s)	677, 682, 707
BmiI	GGNNCC	3 cut(s)	293, 684, 799
BmrFI	CCNGG	2 cut(s)	296, 606
BmsI	GCATC	3 cut(s)	184, 640, 707
BpiI	GAAGAC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	1 cut(s)	819
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	296, 606
BseDI	CCNNGG	1 cut(s)	724
BseGI	GGATG	2 cut(s)	216, 652
BseLI	CCNNNNNNNGG	1 cut(s)	819
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	2, 572
BshFI	GGCC	1 cut(s)	679
BshNI	GGYRCC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	680
BslI	CCNNNNNNNGG	1 cut(s)	819
BsmAI	GTCTC	1 cut(s)	516
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	1 cut(s)	679
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	1 cut(s)	610
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	1 cut(s)	748
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	293, 684, 799
BspMAI	CTGCAG	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	291
BspTI	CTTAAG	2 cut(s)	254, 656
BsrDI	GCAATG	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	724
BssMI	GATC	1 cut(s)	610
BssT1I	CCWWGG	1 cut(s)	724
Bst2UI	CCWGG	2 cut(s)	296, 606
Bst4CI	ACNGT	3 cut(s)	291, 797, 832
Bst6I	CTCTTC	1 cut(s)	612
BstAFI	CTTAAG	2 cut(s)	254, 656
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	763
BstDEI	CTNAG	2 cut(s)	490, 756
BstF5I	GGATG	2 cut(s)	216, 652
BstHHI	GCGC	1 cut(s)	837
BstKTI	GATC	1 cut(s)	613
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	1 cut(s)	610
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 172, 659
BstNI	CCWGG	2 cut(s)	296, 606
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	294, 604
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	2, 572
BstV2I	GAAGAC	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	845
BsuRI	GGCC	1 cut(s)	679
BtsCI	GGATG	2 cut(s)	216, 652
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	2 cut(s)	362, 828
BveI	ACCTGC	1 cut(s)	718
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	837
Cfr13I	GGNCC	3 cut(s)	677, 682, 707
CseI	GACGC	1 cut(s)	329
CsiI	ACCWGGT	1 cut(s)	604
Csp6I	GTAC	3 cut(s)	196, 292, 764
CviAII	CATG	5 cut(s)	508, 614, 643, 738, 769
CviQI	GTAC	3 cut(s)	196, 292, 764
DdeI	CTNAG	2 cut(s)	490, 756
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	724
Eco47I	GGWCC	2 cut(s)	682, 707
EcoRII	CCWGG	2 cut(s)	294, 604
EcoT14I	CCWWGG	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	724
FaeI	CATG	5 cut(s)	511, 617, 646, 741, 772
FatI	CATG	5 cut(s)	507, 613, 642, 737, 768
FauNDI	CATATG	1 cut(s)	786
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	2 cut(s)	16, 561
FokI	GGATG	2 cut(s)	223, 659
Fsp4HI	GCNGC	2 cut(s)	16, 561
FspBI	CTAG	2 cut(s)	362, 515
GlaI	GCGC	1 cut(s)	836
GluI	GCNGC	2 cut(s)	16, 561
HaeIII	GGCC	1 cut(s)	679
HapII	CCGG	1 cut(s)	680
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	837
Hin1II	CATG	5 cut(s)	511, 617, 646, 741, 772
Hin6I	GCGC	1 cut(s)	835
HinP1I	GCGC	1 cut(s)	835
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	2 cut(s)	620, 817
Hpy166II	GTNNAC	4 cut(s)	284, 496, 766, 825
Hpy188I	TCNGA	2 cut(s)	188, 535
Hpy188III	TCNNGA	4 cut(s)	436, 479, 515, 614
Hpy8I	GTNNAC	4 cut(s)	284, 496, 766, 825
HpyAV	CCTTC	2 cut(s)	398, 464
HpyCH4III	ACNGT	3 cut(s)	291, 797, 832
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	8 cut(s)	4, 103, 175, 355, 455, 653, 713, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 172, 659
HpyF3I	CTNAG	2 cut(s)	490, 756
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	5 cut(s)	511, 617, 646, 741, 772
HspAI	GCGC	1 cut(s)	835
KpnI	GGTACC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	610
LmnI	GCTCC	1 cut(s)	162
Lsp1109I	GCAGC	2 cut(s)	2, 572
LweI	GCATC	3 cut(s)	184, 640, 707
MabI	ACCWGGT	1 cut(s)	604
MaeI	CTAG	2 cut(s)	362, 515
MaeII	ACGT	1 cut(s)	382
MalI	GATC	1 cut(s)	612
MboI	GATC	1 cut(s)	610
MboII	GAAGA	4 cut(s)	103, 329, 427, 629
MluCI	AATT	4 cut(s)	44, 518, 590, 804
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	8 cut(s)	99, 130, 170, 401, 460, 648, 668, 701
MseI	TTAA	4 cut(s)	255, 273, 657, 807
MslI	CAYNNNNRTG	2 cut(s)	645, 830
MspCI	CTTAAG	2 cut(s)	254, 656
MspI	CCGG	1 cut(s)	680
MspR9I	CCNGG	2 cut(s)	296, 606
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	2 cut(s)	296, 606
MwoI	GCNNNNNNNGC	3 cut(s)	163, 172, 659
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	1 cut(s)	610
NlaIII	CATG	5 cut(s)	511, 617, 646, 741, 772
NlaIV	GGNNCC	3 cut(s)	293, 684, 799
NspI	RCATGY	1 cut(s)	511
OliI	CACNNNNGTG	1 cut(s)	830
PagI	TCATGA	1 cut(s)	613
PctI	GAATGC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	17, 562
Psp6I	CCWGG	2 cut(s)	294, 604
PspGI	CCWGG	2 cut(s)	294, 604
PspN4I	GGNNCC	3 cut(s)	293, 684, 799
PspPI	GGNCC	3 cut(s)	677, 682, 707
PstI	CTGCAG	1 cut(s)	357
RsaI	GTAC	3 cut(s)	197, 293, 765
RsaNI	GTAC	3 cut(s)	196, 292, 764
RseI	CAYNNNNRTG	2 cut(s)	645, 830
SaqAI	TTAA	4 cut(s)	255, 273, 657, 807
SatI	GCNGC	2 cut(s)	16, 561
Sau3AI	GATC	1 cut(s)	610
Sau96I	GGNCC	3 cut(s)	677, 682, 707
ScrFI	CCNGG	2 cut(s)	296, 606
SexAI	ACCWGGT	1 cut(s)	604
SfaNI	GCATC	3 cut(s)	184, 640, 707
SfcI	CTRYAG	1 cut(s)	353
SinI	GGWCC	2 cut(s)	682, 707
SmiMI	CAYNNNNRTG	2 cut(s)	645, 830
SmlI	CTYRAG	3 cut(s)	224, 254, 656
SmoI	CTYRAG	3 cut(s)	224, 254, 656
Sse9I	AATT	4 cut(s)	44, 518, 590, 804
SspMI	CTAG	2 cut(s)	362, 515
StyD4I	CCNGG	2 cut(s)	294, 604
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	3 cut(s)	291, 797, 832
TaiI	ACGT	1 cut(s)	385
TasI	AATT	4 cut(s)	44, 518, 590, 804
TatI	WGTACW	1 cut(s)	763
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	4 cut(s)	255, 273, 657, 807
Tru9I	TTAA	4 cut(s)	255, 273, 657, 807
TscAI	CASTG	2 cut(s)	362, 835
TseI	GCWGC	2 cut(s)	15, 560
TspDTI	ATGAA	3 cut(s)	498, 516, 630
TspRI	CASTG	2 cut(s)	362, 835
Vha464I	CTTAAG	2 cut(s)	254, 656
VpaK11BI	GGWCC	2 cut(s)	682, 707
XapI	RAATTY	2 cut(s)	44, 518
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	2 cut(s)	362, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.