Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010111

Physical Location & Seq

Genomic Coordinates Reverse (-)

19048502 .. 19053585

Gene Structure 5084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGATTTGAAGATTCAAATGCAGAGGGCAAGGGCAACCTCTTTTGCTTCTTATACTGGCAATCTTGGGCTACTGCTCCTCTGGCATATTCTGCATCTTTTTGTCAGACTATGGTACTTTCTGTTGTGGATGGTTTATGTGCTTGAGAGCTATCTCATTTCTGGTGGAATACTTAAGAAGTATAAAGCCCTTAACGTAGGTAAACTACGGTACCTGGCAATTGTAGTAGAAAGTGAAGAGGCATACGAAACTTCCAAAATTATTCAGCTTCTGCAGTGGCTAGAAGCTATGGGTGTGAAACGTGTGTGCCTCTACGACACAGAAGGAGTGTTGAAGAAATCAAAAGAAGTCATCTTGACAAAACTGAAAAATGCAGTAGTATATGAGGAAGGTTATCAAGATGAAAGCTTAGTTGACCAAAAACGCATGTCTCTAGAATTTTGTTCATTCTCTGATGGAAAAGAAGCTATAACCAAAGCAGCTAACTTGCTCTTTGTGAAGTATTTGAAATTGGCAACACTACCTGGTGATCATGAAGAGAAAATCTTTACAGAACCTCACATGGATGGTGCACTTAAAGCTATTGGTGGCAGAGGGCCGGACCCTGACCTCCTATTAGTTTATGGACCTGCAAGATGCCACCTTGGTTTTCCTGCATGGAGAATGCGATATACTGAGATTGTACACATGGGTCAGCTAAAGCATATGAGCTACGGTTCCCTAATTAAAGCCATTTACAGGTTCACCACTGTGCGCCAAAACTATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.54

Weight (kDa)

9.2

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11755
fragaria_vesca	FvH4_2g08440 FvH4_2g08440 FvH4_2g08440
malus_domestica	MD10G1078800.v1.1
prunus_persica	Prupe.8G100600_v2.0.a1 Prupe.8G100800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263721
rosa_laevigata	RLG00000014319
rosa_multiflora	Rmu_sc0003570.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431180 Rroxscaffold_7G00204010
rosa_rugosa	Rorug06G0005800 Rorug06G0005900 Rorug06G0006000
rosa_samantha	Rh6AG125400 Rh6BG121700 Rh6CG120000 Rh6DG107800
rosa_wichuraiana	Rw0G005270 Rw6G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	637
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	3 cut(s)	116, 212, 684
AfiI	CCNNNNNNNGG	1 cut(s)	738
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	4 cut(s)	10, 17, 334, 508
AjnI	CCWGG	2 cut(s)	213, 523
AleI	CACNNNNGTG	1 cut(s)	749
AluBI	AGCT	9 cut(s)	150, 268, 287, 408, 467, 482, 581, 697, 711
AluI	AGCT	9 cut(s)	150, 268, 287, 408, 467, 482, 581, 697, 711
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	1 cut(s)	435
Alw44I	GTGCAC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	596
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	437
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	3 cut(s)	596, 601, 626
AsuHPI	GGTGA	2 cut(s)	539, 736
AvaII	GGWCC	2 cut(s)	601, 626
BaeGI	GKGCMC	1 cut(s)	574
BaeI	ACNNNNGTAYC	2 cut(s)	194, 227
BanI	GGYRCC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	3 cut(s)	124, 449, 560
BciT130I	CCWGG	2 cut(s)	215, 525
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	2 cut(s)	281, 434
BfmI	CTRYAG	1 cut(s)	272
BfrI	CTTAAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	2 cut(s)	215, 525
Bme18I	GGWCC	2 cut(s)	601, 626
BmgT120I	GGNCC	3 cut(s)	596, 601, 626
BmiI	GGNNCC	3 cut(s)	212, 603, 718
BmrFI	CCNGG	2 cut(s)	215, 525
BmsI	GCATC	2 cut(s)	103, 626
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	1 cut(s)	738
Bse1I	ACTGG	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	215, 525
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	2 cut(s)	135, 571
BseLI	CCNNNNNNNGG	1 cut(s)	738
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	491
BshFI	GGCC	1 cut(s)	598
BshNI	GGYRCC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	738
BsmAI	GTCTC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	1 cut(s)	598
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp1407I	TGTACA	1 cut(s)	682
Bsp143I	GATC	1 cut(s)	529
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	1 cut(s)	667
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	212, 603, 718
BspMAI	CTGCAG	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	682
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	1 cut(s)	529
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	2 cut(s)	215, 525
Bst4CI	ACNGT	3 cut(s)	210, 716, 751
Bst6I	CTCTTC	2 cut(s)	231, 531
BstAFI	CTTAAG	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	682
BstDEI	CTNAG	2 cut(s)	409, 675
BstF5I	GGATG	2 cut(s)	135, 571
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 91, 578
BstNI	CCWGG	2 cut(s)	215, 525
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	213, 523
BstSFI	CTRYAG	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	491
BstXI	CCANNNNNNTGG	1 cut(s)	764
BsuRI	GGCC	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	135, 571
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	281, 747
BveI	ACCTGC	1 cut(s)	637
CaiI	CAGNNNCTG	1 cut(s)	271
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	3 cut(s)	596, 601, 626
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	3 cut(s)	115, 211, 683
CviAII	CATG	5 cut(s)	427, 533, 562, 657, 688
CviQI	GTAC	3 cut(s)	115, 211, 683
DdeI	CTNAG	2 cut(s)	409, 675
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	231, 531
EarI	CTCTTC	2 cut(s)	231, 531
Eco130I	CCWWGG	1 cut(s)	643
Eco47I	GGWCC	2 cut(s)	601, 626
EcoRII	CCWGG	2 cut(s)	213, 523
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	5 cut(s)	430, 536, 565, 660, 691
FatI	CATG	5 cut(s)	426, 532, 561, 656, 687
FauNDI	CATATG	1 cut(s)	705
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	2 cut(s)	142, 578
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	2 cut(s)	281, 434
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	1 cut(s)	599
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	5 cut(s)	430, 536, 565, 660, 691
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	2 cut(s)	539, 736
Hpy166II	GTNNAC	5 cut(s)	203, 415, 572, 685, 744
Hpy188I	TCNGA	2 cut(s)	107, 454
Hpy188III	TCNNGA	4 cut(s)	355, 398, 434, 533
Hpy8I	GTNNAC	5 cut(s)	203, 415, 572, 685, 744
HpyAV	CCTTC	2 cut(s)	317, 383
HpyCH4III	ACNGT	3 cut(s)	210, 716, 751
HpyCH4IV	ACGT	2 cut(s)	195, 301
HpyCH4V	TGCA	7 cut(s)	22, 94, 274, 374, 572, 632, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 91, 578
HpyF3I	CTNAG	2 cut(s)	409, 675
HpySE526I	ACGT	2 cut(s)	195, 301
Hsp92II	CATG	5 cut(s)	430, 536, 565, 660, 691
HspAI	GCGC	1 cut(s)	754
KpnI	GGTACC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	2 cut(s)	103, 626
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	2 cut(s)	281, 434
MaeII	ACGT	2 cut(s)	195, 301
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	4 cut(s)	22, 248, 346, 548
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	5 cut(s)	219, 258, 437, 509, 723
MnlI	CCTC	9 cut(s)	18, 49, 89, 232, 320, 379, 567, 587, 620
MseI	TTAA	4 cut(s)	174, 192, 576, 726
MslI	CAYNNNNRTG	2 cut(s)	564, 749
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	2 cut(s)	215, 525
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	2 cut(s)	215, 525
MwoI	GCNNNNNNNGC	3 cut(s)	82, 91, 578
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	5 cut(s)	430, 536, 565, 660, 691
NlaIV	GGNNCC	3 cut(s)	212, 603, 718
NspI	RCATGY	1 cut(s)	430
OliI	CACNNNNGTG	1 cut(s)	749
PagI	TCATGA	1 cut(s)	532
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	481
Psp6I	CCWGG	2 cut(s)	213, 523
PspGI	CCWGG	2 cut(s)	213, 523
PspN4I	GGNNCC	3 cut(s)	212, 603, 718
PspPI	GGNCC	3 cut(s)	596, 601, 626
PstI	CTGCAG	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	271
RsaI	GTAC	3 cut(s)	116, 212, 684
RsaNI	GTAC	3 cut(s)	115, 211, 683
RseI	CAYNNNNRTG	2 cut(s)	564, 749
SaqAI	TTAA	4 cut(s)	174, 192, 576, 726
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	3 cut(s)	596, 601, 626
ScrFI	CCNGG	2 cut(s)	215, 525
SduI	GDGCHC	1 cut(s)	574
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	103, 626
SfcI	CTRYAG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	601, 626
SmiMI	CAYNNNNRTG	2 cut(s)	564, 749
SmlI	CTYRAG	2 cut(s)	143, 173
SmoI	CTYRAG	2 cut(s)	143, 173
Sse9I	AATT	5 cut(s)	219, 258, 437, 509, 723
SspMI	CTAG	2 cut(s)	281, 434
StyD4I	CCNGG	2 cut(s)	213, 523
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	3 cut(s)	210, 716, 751
TaiI	ACGT	2 cut(s)	198, 304
TasI	AATT	5 cut(s)	219, 258, 437, 509, 723
TatI	WGTACW	1 cut(s)	682
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	4 cut(s)	174, 192, 576, 726
Tru9I	TTAA	4 cut(s)	174, 192, 576, 726
TscAI	CASTG	2 cut(s)	281, 754
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	3 cut(s)	417, 435, 549
TspRI	CASTG	2 cut(s)	281, 754
Vha464I	CTTAAG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	570
VpaK11BI	GGWCC	2 cut(s)	601, 626
XapI	RAATTY	1 cut(s)	437
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	2 cut(s)	281, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.