Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010111

Physical Location & Seq

Genomic Coordinates Reverse (-)

750024 .. 752657

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0005800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGAGCATAGAAAGCTCTTCACCTCAGTGGAAATATGATGTCTTTTTGAGTTTTAGAGGCGAGGACACTCGAAAGGGTTTTGCAGACCATTTACACACTGCATTGGAGCATCAAAAAATCAAACCTTTCAAGGATGATCCTGAACTTGAAAAAGGGGAAGCTATTTCTTCAGCACTTTTTGCTGCAATTGAAGAATCAAGATTTGCCCTCATTGTTCTCTCACAAAATTATGCATCGTCAACATGGTGCCTGAATGTACTTGGAGTTTTGGAGAAGCCTTTGCTAATCATGAAGATTGAAGAAAGCTTTAGGGATGACAAAGAGAAAGTGCAAAGGTGGAGATATGCTTTAACAGAAGTGGCAAGTTTCTCTGGGTGGAATTCAAAGGAATGTTATGCAGAAAGTGTAGTTGGAATTCACTCAAGATTGCAGGAAGTCAATTTTCTTTTAGGACACCCAGAGTGGTTTGGTTTAGGGAGTAGAGTTCTTATCACAACTAGAAATGAGTATTTGTTGATTCGACATGGAGTGGAGAGAAGATTGAAGGTCGAGGAATTCAATGATGAGGATTCTCTTCAGCTTTTCAGCTGGAAAGCATTCAACAGAGGTTACCCTGAAGAAGATTTTCTTGAGTTGTCTAAATCTGTTATAAATTATGCCAAAGATTCAGAAGAGAAGACAATATTCTTAGACATTGCATGTTTCTTTAATGGACAGGATAAAGATCGAGTAATAGAAGTACTGACCAGCTACAATTTTTCTGCAATTATTGGAAAACTGGTTCCTACTGAAAGATCTCTATTGACCGTCTCATATGGAAGACTACGGATGCACGATTTGCTCCAAAAGATGGGTCAGGAAATTGTCCTCCAAGAATCTACTGATGCACCAGGAAAGCACAGGTATCCCTTGAAATCTCTCCCATCACATTTCAACCCTCAGAAGCTACTAGAACTGAACATGTGCCATAGTTGCATTGAACAGTTTCAGTTGGGAATAGAGCCTTTATGCAATTTGAAAACCATTAAACTCAACAACTCTTTGAATCTTGTCAACACCCCAAACTTTCAAGGTAAGCCGTATCTTGAGCTTCTGTTTCTTGATGGTTGTACAAGATTGTATGAGGTTGACCCAGGAGTTAAAGTGCTTGAAAGACTTATGATGCTGAACTTAAAAGATTGCAAGAATCTCATGCATTTTGCAAGCAGTGTACGTGGCTTAGAATCTCTCAAGGTTCTTAATCTTTCTGGTTGCTCAAAGCTTAAAAAACTACCTGATGACGTGGGTCATTTAGAAACTTTGGAGGAGCTTCATGTGAATGGCACTGGCATAAGAGAATTACCTTTCTCTCACTACTACAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

455

Amino Acids

52.34

Weight (kDa)

6.1

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	11 - 85	6.1e-25	TIR domain
TIR_2	PF13676	14 - 87	2.2e-12	TIR domain
WHD_ROQ1	PF23282	224 - 292	6.9e-14	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	384 - 450	1.4e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11755
fragaria_vesca	FvH4_2g08440 FvH4_2g08440 FvH4_2g08440
malus_domestica	MD10G1078800.v1.1
prunus_persica	Prupe.8G100600_v2.0.a1 Prupe.8G100800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263721
rosa_laevigata	RLG00000014319
rosa_multiflora	Rmu_sc0003570.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431180 Rroxscaffold_7G00204010
rosa_rugosa	Rorug06G0005800 Rorug06G0005900 Rorug06G0006000
rosa_samantha	Rh6AG125400 Rh6BG121700 Rh6CG120000 Rh6DG107800
rosa_wichuraiana	Rw0G005270 Rw6G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	850
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	3 cut(s)	379, 414, 554
AcuI	CTGAAG	3 cut(s)	153, 560, 636
AfaI	GTAC	4 cut(s)	258, 741, 1111, 1212
AfiI	CCNNNNNNNGG	1 cut(s)	850
AflIII	ACRYGT	1 cut(s)	960
AjiI	CACGTC	1 cut(s)	1282
AjnI	CCWGG	2 cut(s)	889, 1132
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AleI	CACNNNNGTG	1 cut(s)	25
AloI	GAACNNNNNNTCC	2 cut(s)	765, 797
Alw26I	GTCTC	1 cut(s)	814
AlwI	GGATC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	3 cut(s)	379, 414, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
Asp700I	GAANNNNTTC	3 cut(s)	596, 624, 984
AsuHPI	GGTGA	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	683, 826
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	844, 931, 1097
BceAI	ACGGC	1 cut(s)	1063
BciT130I	CCWGG	2 cut(s)	891, 1134
BciVI	GTATCC	1 cut(s)	915
BcoDI	GTCTC	1 cut(s)	814
BfaI	CTAG	2 cut(s)	498, 950
BfmI	CTRYAG	1 cut(s)	1357
BfuI	GTATCC	1 cut(s)	915
BglII	AGATCT	1 cut(s)	794
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmcAI	AGTACT	1 cut(s)	741
Bme1390I	CCNGG	2 cut(s)	891, 1134
BmgBI	CACGTC	1 cut(s)	1282
BmiI	GGNNCC	2 cut(s)	248, 783
BmrFI	CCNGG	2 cut(s)	891, 1134
BmsI	GCATC	5 cut(s)	118, 242, 819, 874, 1152
BoxI	GACNNNNGTC	1 cut(s)	1284
BpiI	GAAGAC	2 cut(s)	683, 826
BpuEI	CTTGAG	4 cut(s)	406, 650, 1106, 1214
BsaAI	YACGTR	1 cut(s)	1214
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	1132
BsaXI	ACNNNNNCTCC	2 cut(s)	1128, 1158
Bsc4I	CCNNNNNNNGG	1 cut(s)	850
Bse1I	ACTGG	2 cut(s)	783, 1330
Bse3DI	GCAATG	1 cut(s)	693
Bse8I	GATNNNNATC	1 cut(s)	723
BseBI	CCWGG	2 cut(s)	891, 1134
BseDI	CCNNGG	1 cut(s)	1132
BseGI	GGATG	3 cut(s)	139, 319, 834
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	1 cut(s)	850
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	38, 953
BseNI	ACTGG	2 cut(s)	783, 1330
BseRI	GAGGAG	1 cut(s)	1319
BseXI	GCAGC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	850
BsmAI	GTCTC	1 cut(s)	814
BsmBI	CGTCTC	1 cut(s)	814
BsmI	GAATGC	1 cut(s)	596
Bsp1407I	TGTACA	1 cut(s)	1109
Bsp143I	GATC	3 cut(s)	136, 724, 794
BspCNI	CTCAG	2 cut(s)	37, 952
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	248, 783
BspPI	GGATC	1 cut(s)	131
BspQI	GCTCTTC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	693
BsrGI	TGTACA	1 cut(s)	1109
BsrI	ACTGG	2 cut(s)	783, 1330
BssECI	CCNNGG	1 cut(s)	1132
BssMI	GATC	3 cut(s)	136, 724, 794
Bst2UI	CCWGG	2 cut(s)	891, 1134
Bst4CI	ACNGT	2 cut(s)	808, 984
Bst6I	CTCTTC	3 cut(s)	22, 579, 666
BstAPI	GCANNNNNTGC	2 cut(s)	179, 838
BstAUI	TGTACA	1 cut(s)	1109
BstBAI	YACGTR	1 cut(s)	1214
BstC8I	GCNNGC	1 cut(s)	1204
BstDEI	CTNAG	4 cut(s)	24, 688, 939, 1219
BstEII	GGTNACC	1 cut(s)	608
BstF5I	GGATG	3 cut(s)	139, 319, 834
BstKTI	GATC	3 cut(s)	139, 727, 797
BstMAI	GTCTC	1 cut(s)	814
BstMBI	GATC	3 cut(s)	136, 724, 794
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 179, 838, 972
BstNI	CCWGG	2 cut(s)	891, 1134
BstNSI	RCATGY	2 cut(s)	702, 964
BstPAI	GACNNNNGTC	1 cut(s)	1284
BstPI	GGTNACC	1 cut(s)	608
BstSCI	CCNGG	2 cut(s)	889, 1132
BstSFI	CTRYAG	1 cut(s)	1357
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	2 cut(s)	683, 826
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
BsuI	GTATCC	1 cut(s)	915
BtrI	CACGTC	1 cut(s)	1282
BtsCI	GGATG	3 cut(s)	139, 319, 834
BtsI	GCAGTG	2 cut(s)	96, 1213
BtsIMutI	CAGTG	4 cut(s)	32, 96, 1213, 1323
Cac8I	GCNNGC	1 cut(s)	1204
CciI	TCATGA	1 cut(s)	288
Csp6I	GTAC	4 cut(s)	257, 740, 1110, 1211
CviAII	CATG	7 cut(s)	243, 289, 524, 699, 961, 1192, 1313
CviQI	GTAC	4 cut(s)	257, 740, 1110, 1211
DdeI	CTNAG	4 cut(s)	24, 688, 939, 1219
DpnI	GATC	3 cut(s)	138, 726, 796
DpnII	GATC	3 cut(s)	136, 724, 794
Eam1104I	CTCTTC	3 cut(s)	22, 579, 666
EarI	CTCTTC	3 cut(s)	22, 579, 666
Eco57I	CTGAAG	3 cut(s)	153, 560, 636
Eco91I	GGTNACC	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	608
EcoRI	GAATTC	3 cut(s)	379, 414, 554
EcoRII	CCWGG	2 cut(s)	889, 1132
EcoT22I	ATGCAT	2 cut(s)	235, 1197
Esp3I	CGTCTC	1 cut(s)	814
FaeI	CATG	7 cut(s)	246, 292, 527, 702, 964, 1195, 1316
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FatI	CATG	7 cut(s)	242, 288, 523, 698, 960, 1191, 1312
FauNDI	CATATG	1 cut(s)	814
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	3 cut(s)	146, 326, 841
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	498, 950
GluI	GCNGC	1 cut(s)	183
Hin1II	CATG	7 cut(s)	246, 292, 527, 702, 964, 1195, 1316
HincII	GTYRAC	3 cut(s)	240, 1054, 1129
HindII	GTYRAC	3 cut(s)	240, 1054, 1129
HindIII	AAGCTT	2 cut(s)	304, 1259
HinfI	GANTC	8 cut(s)	194, 517, 569, 665, 875, 1045, 1186, 1223
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	4 cut(s)	240, 1054, 1129, 1211
Hpy188I	TCNGA	2 cut(s)	670, 942
Hpy188III	TCNNGA	8 cut(s)	140, 198, 289, 423, 629, 857, 1085, 1100
Hpy8I	GTNNAC	4 cut(s)	240, 1054, 1129, 1211
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	2 cut(s)	808, 984
HpyCH4IV	ACGT	2 cut(s)	1213, 1281
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 179, 838, 972
HpyF3I	CTNAG	4 cut(s)	24, 688, 939, 1219
HpySE526I	ACGT	2 cut(s)	1213, 1281
Hsp92II	CATG	7 cut(s)	246, 292, 527, 702, 964, 1195, 1316
Kzo9I	GATC	3 cut(s)	136, 724, 794
LguI	GCTCTTC	1 cut(s)	22
LmnI	GCTCC	3 cut(s)	106, 846, 1306
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	5 cut(s)	118, 242, 819, 874, 1152
MaeI	CTAG	2 cut(s)	498, 950
MaeII	ACGT	2 cut(s)	1213, 1281
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	3 cut(s)	138, 726, 796
MboI	GATC	3 cut(s)	136, 724, 794
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	794
MmeI	TCCRAC	1 cut(s)	391
Mph1103I	ATGCAT	2 cut(s)	235, 1197
MroXI	GAANNNNTTC	3 cut(s)	596, 624, 984
MseI	TTAA	7 cut(s)	350, 708, 1026, 1140, 1172, 1239, 1263
MslI	CAYNNNNRTG	2 cut(s)	25, 1317
MspA1I	CMGCKG	1 cut(s)	588
MspR9I	CCNGG	2 cut(s)	891, 1134
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	2 cut(s)	891, 1134
MwoI	GCNNNNNNNGC	4 cut(s)	12, 179, 838, 972
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	3 cut(s)	136, 724, 794
NlaIII	CATG	7 cut(s)	246, 292, 527, 702, 964, 1195, 1316
NlaIV	GGNNCC	2 cut(s)	248, 783
NsiI	ATGCAT	2 cut(s)	235, 1197
NspI	RCATGY	2 cut(s)	702, 964
OliI	CACNNNNGTG	1 cut(s)	25
PagI	TCATGA	1 cut(s)	288
PciI	ACATGT	1 cut(s)	960
PciSI	GCTCTTC	1 cut(s)	22
PctI	GAATGC	1 cut(s)	596
PdmI	GAANNNNTTC	3 cut(s)	596, 624, 984
PfeI	GAWTC	8 cut(s)	194, 517, 569, 665, 875, 1045, 1186, 1223
PflMI	CCANNNNNTGG	1 cut(s)	850
PkrI	GCNGC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	1214
PscI	ACATGT	1 cut(s)	960
PshAI	GACNNNNGTC	1 cut(s)	1284
PsiI	TTATAA	1 cut(s)	650
Psp6I	CCWGG	2 cut(s)	889, 1132
PspEI	GGTNACC	1 cut(s)	608
PspGI	CCWGG	2 cut(s)	889, 1132
PspN4I	GGNNCC	2 cut(s)	248, 783
PsuI	RGATCY	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	588
RsaI	GTAC	4 cut(s)	258, 741, 1111, 1212
RsaNI	GTAC	4 cut(s)	257, 740, 1110, 1211
RseI	CAYNNNNRTG	2 cut(s)	25, 1317
SapI	GCTCTTC	1 cut(s)	22
SaqAI	TTAA	7 cut(s)	350, 708, 1026, 1140, 1172, 1239, 1263
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	3 cut(s)	136, 724, 794
ScaI	AGTACT	1 cut(s)	741
ScrFI	CCNGG	2 cut(s)	891, 1134
SfaNI	GCATC	5 cut(s)	118, 242, 819, 874, 1152
SfcI	CTRYAG	1 cut(s)	1357
SmiMI	CAYNNNNRTG	2 cut(s)	25, 1317
SmlI	CTYRAG	4 cut(s)	421, 629, 1085, 1229
SmoI	CTYRAG	4 cut(s)	421, 629, 1085, 1229
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	2 cut(s)	498, 950
StyD4I	CCNGG	2 cut(s)	889, 1132
TaaI	ACNGT	2 cut(s)	808, 984
TaiI	ACGT	2 cut(s)	1216, 1284
TaqI	TCGA	4 cut(s)	70, 520, 549, 727
TatI	WGTACW	3 cut(s)	256, 739, 1109
TfiI	GAWTC	8 cut(s)	194, 517, 569, 665, 875, 1045, 1186, 1223
Tru1I	TTAA	7 cut(s)	350, 708, 1026, 1140, 1172, 1239, 1263
Tru9I	TTAA	7 cut(s)	350, 708, 1026, 1140, 1172, 1239, 1263
TscAI	CASTG	4 cut(s)	32, 103, 1213, 1330
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	305, 1301
TspGWI	ACGGA	1 cut(s)	841
TspRI	CASTG	4 cut(s)	32, 103, 1213, 1330
Van91I	CCANNNNNTGG	1 cut(s)	850
XapI	RAATTY	3 cut(s)	379, 414, 554
XceI	RCATGY	2 cut(s)	702, 964
XmnI	GAANNNNTTC	3 cut(s)	596, 624, 984
XspI	CTAG	2 cut(s)	498, 950
ZrmI	AGTACT	1 cut(s)	741
Zsp2I	ATGCAT	2 cut(s)	235, 1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.