Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010111

Physical Location & Seq

Genomic Coordinates Forward (+)

13177522 .. 13182068

Gene Structure 4547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATGGATTTGAGGATTGATATGCAGCGGGCTTCCTTTGCTCAAATTGGCAATCTCGGGCTTCTGCTCCTATGGCATATTGTACACCTTTTTGTCAGCATATGGTACTTTCTATTGGGTTTAGCTTATGTGCTTCAAAGCTATCTTATTTCTGGTGGAGTACTCAAGAGCTACAAAGCCCTTAATTTGGGCAAGCTACGGTACCTGGCAATTGTGATAGAAAGTGAAGAAGCTTACCAAACATCAAAAGTAATTGAGCTGCTGCAGTGGCTAGAAGCTATTGGTGTGAAGCGTGTGTGCCTCTATGATACAGAAGGAGTGTTGAAGAAATCAAAAGAAGCCATCTTGAATAAACTGAAAAATGCAAGCGAATTTAAGGCTTATGAAGATTTAGTCGATCAAAACCGCATGGCTCTGGAAATTTTGTCATTTTCTGATGGAAAAGAAGCTGTAACCAAAGCAGCTAACTTACTTTTTGTGAAGTATTTGAAGTTGGCCAAATCAGTTGGAGATCATGAAGAGAAAATCTTTACAGAACCTAACATGGATGAGGCACTAAAAGCTATTAGTTGTAGAGGGCCAGACCCTGACCTCCTATTGGTTTACGGACCTGCAAGATGCCACCTTGGTTTCCCTGCATGGAGAATTCGATATACTGAGATTGTACATATGGGACAATTGAAGTCTATGAGATATGGTTCCCTAATTAAAGCCATCTACAGGTTCACCACTGTGCGGCAGAACTATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

28.65

Weight (kDa)

9.14

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11755
fragaria_vesca	FvH4_2g08440 FvH4_2g08440 FvH4_2g08440
malus_domestica	MD10G1078800.v1.1
prunus_persica	Prupe.8G100600_v2.0.a1 Prupe.8G100800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263721
rosa_laevigata	RLG00000014319
rosa_multiflora	Rmu_sc0003570.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431180 Rroxscaffold_7G00204010
rosa_rugosa	Rorug06G0005800 Rorug06G0005900 Rorug06G0006000
rosa_samantha	Rh6AG125400 Rh6BG121700 Rh6CG120000 Rh6DG107800
rosa_wichuraiana	Rw0G005270 Rw6G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	619
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	201
AciI	CCGC	3 cut(s)	28, 406, 736
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	3 cut(s)	371, 420, 645
AfaI	GTAC	5 cut(s)	84, 107, 162, 203, 666
AfiI	CCNNNNNNNGG	4 cut(s)	187, 598, 720, 735
AgsI	TTSAA	5 cut(s)	137, 325, 349, 490, 682
AjnI	CCWGG	1 cut(s)	204
AleI	CACNNNNGTG	1 cut(s)	731
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	495, 578
ApeKI	GCWGC	4 cut(s)	25, 259, 262, 461
ApoI	RAATTY	3 cut(s)	371, 420, 645
Asp718I	GGTACC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	578, 608
AsuHPI	GGTGA	1 cut(s)	718
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	608
BalI	TGGCCA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	37, 246, 249, 473
BccI	CCATC	3 cut(s)	350, 431, 722
BciT130I	CCWGG	1 cut(s)	206
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	2 cut(s)	263, 718
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	5 cut(s)	26, 260, 263, 462, 737
BlsI	GCNGC	5 cut(s)	27, 261, 264, 463, 738
BmcAI	AGTACT	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	578, 608
BmiI	GGNNCC	2 cut(s)	203, 700
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	608
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 598, 720, 735
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	4 cut(s)	187, 598, 720, 735
BseMII	CTCAG	1 cut(s)	648
BseXI	GCAGC	4 cut(s)	37, 246, 249, 473
BshFI	GGCC	2 cut(s)	497, 580
BshNI	GGYRCC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	4 cut(s)	187, 598, 720, 735
BsmFI	GGGAC	1 cut(s)	687
BsnI	GGCC	2 cut(s)	497, 580
BsoBI	CYCGRG	1 cut(s)	56
Bsp1407I	TGTACA	2 cut(s)	82, 664
Bsp143I	GATC	2 cut(s)	397, 511
BspACI	CCGC	3 cut(s)	28, 406, 736
BspANI	GGCC	2 cut(s)	497, 580
BspCNI	CTCAG	1 cut(s)	649
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	203, 700
BspMAI	CTGCAG	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	619
BspT107I	GGYRCC	1 cut(s)	201
BsrGI	TGTACA	2 cut(s)	82, 664
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	2 cut(s)	397, 511
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	201, 733
Bst6I	CTCTTC	1 cut(s)	513
BstAUI	TGTACA	2 cut(s)	82, 664
BstC8I	GCNNGC	3 cut(s)	30, 194, 367
BstDEI	CTNAG	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	553
BstKTI	GATC	2 cut(s)	400, 514
BstMBI	GATC	2 cut(s)	397, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 73, 268, 560
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	2 cut(s)	263, 718
BstV1I	GCAGC	4 cut(s)	37, 246, 249, 473
BsuRI	GGCC	2 cut(s)	497, 580
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	2 cut(s)	272, 729
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	3 cut(s)	30, 194, 367
CaiI	CAGNNNCTG	1 cut(s)	587
CciI	TCATGA	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	578, 608
Csp6I	GTAC	5 cut(s)	83, 106, 161, 202, 665
CviAII	CATG	4 cut(s)	409, 515, 544, 639
CviQI	GTAC	5 cut(s)	83, 106, 161, 202, 665
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	2 cut(s)	399, 513
DpnII	GATC	2 cut(s)	397, 511
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	608
Eco88I	CYCGRG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	4 cut(s)	412, 518, 547, 642
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	4 cut(s)	408, 514, 543, 638
FauI	CCCGC	1 cut(s)	21
FauNDI	CATATG	2 cut(s)	101, 669
Fnu4HI	GCNGC	5 cut(s)	26, 260, 263, 462, 737
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	5 cut(s)	26, 260, 263, 462, 737
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	5 cut(s)	26, 260, 263, 462, 737
HaeIII	GGCC	2 cut(s)	497, 580
Hin1II	CATG	4 cut(s)	412, 518, 547, 642
HindIII	AAGCTT	1 cut(s)	231
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	3 cut(s)	85, 604, 726
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	4 cut(s)	166, 346, 416, 515
Hpy8I	GTNNAC	3 cut(s)	85, 604, 726
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	201, 733
HpyCH4V	TGCA	5 cut(s)	25, 265, 365, 614, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 73, 268, 560
HpyF3I	CTNAG	1 cut(s)	657
Hsp92II	CATG	4 cut(s)	412, 518, 547, 642
KpnI	GGTACC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	397, 511
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	9 cut(s)	138, 191, 218, 401, 594, 600, 624, 648, 706
Lsp1109I	GCAGC	4 cut(s)	37, 246, 249, 473
LweI	GCATC	1 cut(s)	608
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	2 cut(s)	399, 513
MboI	GATC	2 cut(s)	397, 511
MboII	GAAGA	4 cut(s)	239, 337, 398, 530
MfeI	CAATTG	2 cut(s)	210, 677
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	9 cut(s)	45, 184, 210, 252, 371, 420, 645, 677, 705
MluNI	TGGCCA	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	5 cut(s)	6, 311, 544, 569, 602
Mox20I	TGGCCA	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	3 cut(s)	183, 375, 708
MslI	CAYNNNNRTG	1 cut(s)	731
Msp20I	TGGCCA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	2 cut(s)	210, 677
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	38, 73, 268, 560
NdeI	CATATG	2 cut(s)	101, 669
NdeII	GATC	2 cut(s)	397, 511
NlaIII	CATG	4 cut(s)	412, 518, 547, 642
NlaIV	GGNNCC	2 cut(s)	203, 700
OliI	CACNNNNGTG	1 cut(s)	731
PagI	TCATGA	1 cut(s)	514
PkrI	GCNGC	5 cut(s)	27, 261, 264, 463, 738
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	203, 700
PspPI	GGNCC	2 cut(s)	578, 608
PstI	CTGCAG	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	587
RsaI	GTAC	5 cut(s)	84, 107, 162, 203, 666
RsaNI	GTAC	5 cut(s)	83, 106, 161, 202, 665
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	3 cut(s)	183, 375, 708
SatI	GCNGC	5 cut(s)	26, 260, 263, 462, 737
Sau3AI	GATC	2 cut(s)	397, 511
Sau96I	GGNCC	2 cut(s)	578, 608
ScaI	AGTACT	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	608
SfcI	CTRYAG	2 cut(s)	263, 718
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	9 cut(s)	45, 184, 210, 252, 371, 420, 645, 677, 705
SsiI	CCGC	3 cut(s)	28, 406, 736
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	2 cut(s)	201, 733
TaqI	TCGA	2 cut(s)	396, 649
TasI	AATT	9 cut(s)	45, 184, 210, 252, 371, 420, 645, 677, 705
TatI	WGTACW	3 cut(s)	82, 160, 664
TauI	GCSGC	1 cut(s)	739
Tru1I	TTAA	3 cut(s)	183, 375, 708
Tru9I	TTAA	3 cut(s)	183, 375, 708
TscAI	CASTG	2 cut(s)	272, 736
TseI	GCWGC	4 cut(s)	25, 259, 262, 461
TspDTI	ATGAA	2 cut(s)	399, 531
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	2 cut(s)	272, 736
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	3 cut(s)	371, 420, 645
XspI	CTAG	1 cut(s)	272
ZrmI	AGTACT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.