Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010111

Physical Location & Seq

Genomic Coordinates Reverse (-)

18746718 .. 18752034

Gene Structure 5317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG125400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCTTTTTACCTTAATAAAACCTAAATTTAATGTTGATCCTGGATTGATATTGGTTCAGACTGGCAATCTTGGGCTACTGCTCCTCTGGCATATTCTGCATCTTTTTATCAGACTATGGTACTTTCTGTTGTGGATGGTTTATGTGCTTGAGAGCTATCTCATTTCTGGTGGAATACTTAAGAAGTATAAAGCCCTTAACGTAGGTAAACTACGGTACCTGGCGATTGTAGTAGAAAGTGAAGACGCATACGAAACTTCCAAAGTTATTGAGCTTCTGCAGTGGCTAGAAGCTATTGGCGTGAAACGTGCGTGCCTCTACGACACAGAAGGAGTGTTGAAGAAATCAAAAGAAGTCATCTTGACAAAACTGAAAAATGCAGTAGTATATGAGGAAGGTTATCAAGATGAAAGCTTAGTTGACCAGAAACGCATGTCTCTAGAATTTTGTTCATTCTCTGATGGAAAAGAAGCTATAACCAAAGCAGCTAACTTGCTCTTTGTGAAGTATTCGAAATTGGCGACACTACCTGGTGATCATGAAGAGAAAATCTTTACAGAACCTCACATGGATGATGCACTTAAAGCTATTGGTGGCAGAGGGCCGGACCCTGACCTCCTATTAGTTTATGGACCTGCAAGATGCCACCTTGGTTTTCCTGCATGGAGAATGCGATATACTGAGATTGTACACATGGGTCAGCTAAAGCATATGAGCTACGGTTCCCTAATTAAAGCCATTTACAGGTTCACCACTGTGCGCCAAAACTATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.69

Weight (kDa)

8.89

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11755
fragaria_vesca	FvH4_2g08440 FvH4_2g08440 FvH4_2g08440
malus_domestica	MD10G1078800.v1.1
prunus_persica	Prupe.8G100600_v2.0.a1 Prupe.8G100800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263721
rosa_laevigata	RLG00000014319
rosa_multiflora	Rmu_sc0003570.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431180 Rroxscaffold_7G00204010
rosa_rugosa	Rorug06G0005800 Rorug06G0005900 Rorug06G0006000
rosa_samantha	Rh6AG125400 Rh6BG121700 Rh6CG120000 Rh6DG107800
rosa_wichuraiana	Rw0G005270 Rw6G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	26, 443
AfaI	GTAC	3 cut(s)	122, 218, 690
AfiI	CCNNNNNNNGG	1 cut(s)	744
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	3 cut(s)	40, 219, 529
AleI	CACNNNNGTG	1 cut(s)	755
AluBI	AGCT	9 cut(s)	156, 274, 293, 414, 473, 488, 587, 703, 717
AluI	AGCT	9 cut(s)	156, 274, 293, 414, 473, 488, 587, 703, 717
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	2 cut(s)	26, 443
Asp718I	GGTACC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	762
AspS9I	GGNCC	3 cut(s)	602, 607, 632
AsuHPI	GGTGA	2 cut(s)	545, 742
AsuII	TTCGAA	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	607, 632
BaeI	ACNNNNGTAYC	2 cut(s)	200, 233
BanI	GGYRCC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	2 cut(s)	130, 455
BciT130I	CCWGG	3 cut(s)	42, 221, 531
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	287, 440
BfmI	CTRYAG	1 cut(s)	278
BfrI	CTTAAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	3 cut(s)	42, 221, 531
Bme18I	GGWCC	2 cut(s)	607, 632
BmgT120I	GGNCC	3 cut(s)	602, 607, 632
BmiI	GGNNCC	3 cut(s)	218, 609, 724
BmrFI	CCNGG	3 cut(s)	42, 221, 531
BmsI	GCATC	3 cut(s)	109, 565, 632
BpiI	GAAGAC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	1 cut(s)	744
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	3 cut(s)	42, 221, 531
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	2 cut(s)	141, 577
BseLI	CCNNNNNNNGG	1 cut(s)	744
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	1 cut(s)	604
BshNI	GGYRCC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	605
BslI	CCNNNNNNNGG	1 cut(s)	744
BsmAI	GTCTC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	675
BsnI	GGCC	1 cut(s)	604
Bsp119I	TTCGAA	1 cut(s)	512
Bsp1407I	TGTACA	1 cut(s)	688
Bsp143I	GATC	2 cut(s)	37, 535
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	1 cut(s)	673
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	218, 609, 724
BspMAI	CTGCAG	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	2 cut(s)	37, 535
BssT1I	CCWWGG	1 cut(s)	649
Bst2UI	CCWGG	3 cut(s)	42, 221, 531
Bst4CI	ACNGT	3 cut(s)	216, 722, 757
Bst6I	CTCTTC	1 cut(s)	537
BstAFI	CTTAAG	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstAUI	TGTACA	1 cut(s)	688
BstBI	TTCGAA	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	415, 681
BstF5I	GGATG	2 cut(s)	141, 577
BstHHI	GCGC	1 cut(s)	762
BstKTI	GATC	2 cut(s)	40, 538
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	2 cut(s)	37, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 97, 584
BstNI	CCWGG	3 cut(s)	42, 221, 531
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	3 cut(s)	40, 219, 529
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	770
BsuRI	GGCC	1 cut(s)	604
BtsCI	GGATG	2 cut(s)	141, 577
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	287, 753
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	313
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	762
Cfr13I	GGNCC	3 cut(s)	602, 607, 632
CseI	GACGC	1 cut(s)	254
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	3 cut(s)	121, 217, 689
CviAII	CATG	5 cut(s)	433, 539, 568, 663, 694
CviQI	GTAC	3 cut(s)	121, 217, 689
DdeI	CTNAG	2 cut(s)	415, 681
DpnI	GATC	2 cut(s)	39, 537
DpnII	GATC	2 cut(s)	37, 535
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	649
Eco47I	GGWCC	2 cut(s)	607, 632
EcoRII	CCWGG	3 cut(s)	40, 219, 529
EcoT14I	CCWWGG	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	5 cut(s)	436, 542, 571, 666, 697
FatI	CATG	5 cut(s)	432, 538, 567, 662, 693
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	2 cut(s)	148, 584
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	287, 440
GlaI	GCGC	1 cut(s)	761
GluI	GCNGC	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	605
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	762
Hin1II	CATG	5 cut(s)	436, 542, 571, 666, 697
Hin6I	GCGC	1 cut(s)	760
HinP1I	GCGC	1 cut(s)	760
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	412
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	2 cut(s)	545, 742
Hpy166II	GTNNAC	4 cut(s)	209, 421, 691, 750
Hpy188I	TCNGA	3 cut(s)	60, 113, 460
Hpy188III	TCNNGA	4 cut(s)	361, 404, 440, 539
Hpy8I	GTNNAC	4 cut(s)	209, 421, 691, 750
HpyAV	CCTTC	2 cut(s)	323, 389
HpyCH4III	ACNGT	3 cut(s)	216, 722, 757
HpyCH4IV	ACGT	2 cut(s)	201, 307
HpyCH4V	TGCA	6 cut(s)	100, 280, 380, 578, 638, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 97, 584
HpyF3I	CTNAG	2 cut(s)	415, 681
HpySE526I	ACGT	2 cut(s)	201, 307
Hsp92II	CATG	5 cut(s)	436, 542, 571, 666, 697
HspAI	GCGC	1 cut(s)	760
KpnI	GGTACC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	2 cut(s)	37, 535
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	3 cut(s)	109, 565, 632
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	2 cut(s)	287, 440
MaeII	ACGT	2 cut(s)	201, 307
MalI	GATC	2 cut(s)	39, 537
MboI	GATC	2 cut(s)	37, 535
MboII	GAAGA	3 cut(s)	254, 352, 554
MluCI	AATT	4 cut(s)	26, 443, 515, 729
MnlI	CCTC	6 cut(s)	95, 326, 385, 573, 593, 626
MseI	TTAA	6 cut(s)	14, 30, 180, 198, 582, 732
MslI	CAYNNNNRTG	2 cut(s)	570, 755
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	3 cut(s)	42, 221, 531
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	3 cut(s)	42, 221, 531
MwoI	GCNNNNNNNGC	3 cut(s)	88, 97, 584
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	2 cut(s)	37, 535
NlaIII	CATG	5 cut(s)	436, 542, 571, 666, 697
NlaIV	GGNNCC	3 cut(s)	218, 609, 724
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	512
OliI	CACNNNNGTG	1 cut(s)	755
PagI	TCATGA	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PctI	GAATGC	1 cut(s)	675
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	487
Psp6I	CCWGG	3 cut(s)	40, 219, 529
PspGI	CCWGG	3 cut(s)	40, 219, 529
PspN4I	GGNNCC	3 cut(s)	218, 609, 724
PspPI	GGNCC	3 cut(s)	602, 607, 632
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	3 cut(s)	122, 218, 690
RsaNI	GTAC	3 cut(s)	121, 217, 689
RseI	CAYNNNNRTG	2 cut(s)	570, 755
SaqAI	TTAA	6 cut(s)	14, 30, 180, 198, 582, 732
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	2 cut(s)	37, 535
Sau96I	GGNCC	3 cut(s)	602, 607, 632
ScrFI	CCNGG	3 cut(s)	42, 221, 531
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	3 cut(s)	109, 565, 632
SfcI	CTRYAG	1 cut(s)	278
SfuI	TTCGAA	1 cut(s)	512
SinI	GGWCC	2 cut(s)	607, 632
SmiMI	CAYNNNNRTG	2 cut(s)	570, 755
SmlI	CTYRAG	2 cut(s)	149, 179
SmoI	CTYRAG	2 cut(s)	149, 179
Sse9I	AATT	4 cut(s)	26, 443, 515, 729
SspMI	CTAG	2 cut(s)	287, 440
StyD4I	CCNGG	3 cut(s)	40, 219, 529
StyI	CCWWGG	1 cut(s)	649
TaaI	ACNGT	3 cut(s)	216, 722, 757
TaiI	ACGT	2 cut(s)	204, 310
TaqI	TCGA	1 cut(s)	512
TasI	AATT	4 cut(s)	26, 443, 515, 729
TatI	WGTACW	1 cut(s)	688
Tru1I	TTAA	6 cut(s)	14, 30, 180, 198, 582, 732
Tru9I	TTAA	6 cut(s)	14, 30, 180, 198, 582, 732
TscAI	CASTG	2 cut(s)	287, 760
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	3 cut(s)	423, 441, 555
TspRI	CASTG	2 cut(s)	287, 760
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	607, 632
XapI	RAATTY	2 cut(s)	26, 443
XbaI	TCTAGA	1 cut(s)	439
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	2 cut(s)	287, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.