MD10G1078800.v1.1

Dehydrodolichyl diphosphate syntase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0010111
Physical Location & Seq
Forward (+)
11206307 .. 11210503
4197 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1078800.v1.1.491

Sequence Viewer

Length: 744 bp
ATGCAGAGGGTGTCCTTTTGTGCTGCTCAAATTGGCAATCTTGGGCTTGTGCTCCTATGGCATATTCTACATCTTTTTGTTAGCATATGGTACTTTCTATTAGATTTAGCTTTTGTGTTCGAAAGCTATCTTATTTCTGGTGGAGTACTCAAGAACTACAAAGCCCTTGATTTGGGAAAGCTAAAGTACCTAGCTATTGTGATAGAAAGTGAAGAAGCTTACCAAACTTCAAAAGTTATTGAGCTTCTGCAGTGGCTAGAAGCTATTGGCGTGAAGCGTGTGTGCCTTTATGATACGGAAGGAGTTTTGAAGAAATCAAAAGGAGCCATCTTGAATAAACTGAAGAATGCAACAGAATTTGAGGATGGTGATGAAGGGTTACTTGACCAAAAGCGCATGGCTTTGGAATTTTCGTCGTTCTCTGATGGAAAAGAAGCTGTGACCAAAGCAGCTAACTTACTTTTTGCAAAGTATTTGAAATTAGCCAACTTAGTTGGAGATCATGAAGAGAAAATCTTTACAGAACCTAACATGGACGAGGCACTAAAAGCTATTGGTTGCAGAGGGCCAGACCCTGACCTGCTATTAGTTTATGGACCTGCAAGATGCCACCTTGGTTTCCCTGCATGGAGAATCCGGTATACTGAGATCATACACATGGGAGAATTGAAGTGTATGAAATATGGCTCCCTTATTAAAGCCATCTATAGGTTCACTACCGTGCGCCAAAACTATGGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.98

Weight (kDa)

8.15

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 588, 607
AccI GTMKAC 1 cut(s) 641
AcsI RAATTY 2 cut(s) 356, 407
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 3 cut(s) 92, 147, 188
AfiI CCNNNNNNNGG 2 cut(s) 172, 708
AgsI TTSAA 5 cut(s) 231, 310, 334, 478, 670
AleI CACNNNNGTG 1 cut(s) 719
Alw21I GWGCWC 1 cut(s) 54
AlwNI CAGNNNCTG 1 cut(s) 575
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 2 cut(s) 23, 449
ApoI RAATTY 2 cut(s) 356, 407
AspLEI GCGC 2 cut(s) 396, 726
AspS9I GGNCC 2 cut(s) 566, 596
AsuHPI GGTGA 1 cut(s) 380
AsuII TTCGAA 1 cut(s) 120
AvaII GGWCC 1 cut(s) 596
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 10, 461
BccI CCATC 4 cut(s) 335, 359, 419, 710
BfaI CTAG 2 cut(s) 191, 257
BfmI CTRYAG 2 cut(s) 248, 706
BfuAI ACCTGC 2 cut(s) 588, 607
BisI GCNGC 2 cut(s) 24, 450
BlsI GCNGC 2 cut(s) 25, 451
BmcAI AGTACT 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 596
BmgT120I GGNCC 2 cut(s) 566, 596
BmiI GGNNCC 2 cut(s) 325, 688
BmsI GCATC 1 cut(s) 596
Bpu14I TTCGAA 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 613
BsaWI WCCGGW 1 cut(s) 636
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 708
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 172, 708
BseMII CTCAG 1 cut(s) 636
BseXI GCAGC 2 cut(s) 10, 461
BshFI GGCC 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 637
BslI CCNNNNNNNGG 2 cut(s) 172, 708
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 1 cut(s) 568
Bsp119I TTCGAA 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 499, 648
BspANI GGCC 1 cut(s) 568
BspCNI CTCAG 1 cut(s) 637
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 325, 688
BspMAI CTGCAG 1 cut(s) 252
BspMI ACCTGC 2 cut(s) 588, 607
BspT104I TTCGAA 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 2 cut(s) 499, 648
BssNAI GTATAC 1 cut(s) 642
BssT1I CCWWGG 1 cut(s) 613
Bst1107I GTATAC 1 cut(s) 642
Bst4CI ACNGT 1 cut(s) 721
Bst6I CTCTTC 1 cut(s) 501
BstBI TTCGAA 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 490, 645
BstF5I GGATG 1 cut(s) 370
BstHHI GCGC 2 cut(s) 396, 726
BstKTI GATC 2 cut(s) 502, 651
BstMBI GATC 2 cut(s) 499, 648
BstMWI GCNNNNNNNGC 2 cut(s) 58, 548
BstSFI CTRYAG 2 cut(s) 248, 706
BstV1I GCAGC 2 cut(s) 10, 461
BstXI CCANNNNNNTGG 1 cut(s) 734
BstZ17I GTATAC 1 cut(s) 642
BsuRI GGCC 1 cut(s) 568
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 257
BveI ACCTGC 2 cut(s) 588, 607
CaiI CAGNNNCTG 1 cut(s) 575
CciI TCATGA 1 cut(s) 502
CfoI GCGC 2 cut(s) 396, 726
Cfr13I GGNCC 2 cut(s) 566, 596
Csp6I GTAC 3 cut(s) 91, 146, 187
CviAII CATG 5 cut(s) 397, 503, 532, 627, 658
CviQI GTAC 3 cut(s) 91, 146, 187
DdeI CTNAG 2 cut(s) 490, 645
DpnI GATC 2 cut(s) 501, 650
DpnII GATC 2 cut(s) 499, 648
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 613
ErhI CCWWGG 1 cut(s) 613
FaeI CATG 5 cut(s) 400, 506, 535, 630, 661
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 5 cut(s) 396, 502, 531, 626, 657
FauNDI CATATG 1 cut(s) 86
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 2 cut(s) 24, 450
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 24, 450
FspBI CTAG 2 cut(s) 191, 257
GlaI GCGC 2 cut(s) 395, 725
GluI GCNGC 2 cut(s) 24, 450
HaeIII GGCC 1 cut(s) 568
HapII CCGG 1 cut(s) 637
HhaI GCGC 2 cut(s) 396, 726
Hin1II CATG 5 cut(s) 400, 506, 535, 630, 661
Hin6I GCGC 2 cut(s) 394, 724
HinP1I GCGC 2 cut(s) 394, 724
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 1 cut(s) 633
HpaII CCGG 1 cut(s) 637
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 2 cut(s) 642, 714
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 3 cut(s) 151, 331, 503
Hpy8I GTNNAC 2 cut(s) 642, 714
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 293, 368
HpyCH4III ACNGT 1 cut(s) 721
HpyCH4V TGCA 7 cut(s) 4, 250, 350, 467, 561, 602, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 548
HpyF3I CTNAG 2 cut(s) 490, 645
Hsp92II CATG 5 cut(s) 400, 506, 535, 630, 661
HspAI GCGC 2 cut(s) 394, 724
Kzo9I GATC 2 cut(s) 499, 648
LmnI GCTCC 3 cut(s) 57, 323, 692
LpnPI CCDG 7 cut(s) 123, 582, 588, 593, 612, 636, 650
Lsp1109I GCAGC 2 cut(s) 10, 461
LweI GCATC 1 cut(s) 596
MaeI CTAG 2 cut(s) 191, 257
MaeIII GTNAC 2 cut(s) 378, 439
MalI GATC 2 cut(s) 501, 650
MboI GATC 2 cut(s) 499, 648
MboII GAAGA 4 cut(s) 224, 322, 355, 518
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 5 cut(s) 30, 356, 407, 479, 665
MmeI TCCRAC 1 cut(s) 475
MnlI CCTC 3 cut(s) 355, 532, 557
MseI TTAA 1 cut(s) 696
MslI CAYNNNNRTG 2 cut(s) 656, 719
MspI CCGG 1 cut(s) 637
Mva1269I GAATGC 1 cut(s) 352
MwoI GCNNNNNNNGC 2 cut(s) 58, 548
NdeI CATATG 1 cut(s) 86
NdeII GATC 2 cut(s) 499, 648
NlaIII CATG 5 cut(s) 400, 506, 535, 630, 661
NlaIV GGNNCC 2 cut(s) 325, 688
NmuCI GTSAC 1 cut(s) 439
NspV TTCGAA 1 cut(s) 120
OliI CACNNNNGTG 1 cut(s) 719
PagI TCATGA 1 cut(s) 502
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 633
PkrI GCNGC 2 cut(s) 25, 451
PspN4I GGNNCC 2 cut(s) 325, 688
PspPI GGNCC 2 cut(s) 566, 596
PstI CTGCAG 1 cut(s) 252
PstNI CAGNNNCTG 1 cut(s) 575
RsaI GTAC 3 cut(s) 92, 147, 188
RsaNI GTAC 3 cut(s) 91, 146, 187
RseI CAYNNNNRTG 2 cut(s) 656, 719
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 2 cut(s) 24, 450
Sau3AI GATC 2 cut(s) 499, 648
Sau96I GGNCC 2 cut(s) 566, 596
ScaI AGTACT 1 cut(s) 147
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 1 cut(s) 596
SfcI CTRYAG 2 cut(s) 248, 706
SfuI TTCGAA 1 cut(s) 120
SinI GGWCC 1 cut(s) 596
SmiMI CAYNNNNRTG 2 cut(s) 656, 719
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 5 cut(s) 30, 356, 407, 479, 665
SspMI CTAG 2 cut(s) 191, 257
StyI CCWWGG 1 cut(s) 613
TaaI ACNGT 1 cut(s) 721
TaqI TCGA 1 cut(s) 120
TasI AATT 5 cut(s) 30, 356, 407, 479, 665
TatI WGTACW 1 cut(s) 145
TfiI GAWTC 1 cut(s) 633
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 23, 449
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 3 cut(s) 387, 519, 692
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 2 cut(s) 356, 407
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 2 cut(s) 191, 257
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.