Rorug06G0005900

Dehydrodolichyl diphosphate syntase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010111
Physical Location & Seq
Forward (+)
761767 .. 762081
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0005900.1

Sequence Viewer

Length: 303 bp
ATGTTGAACATTCTACATGTGTGTACATCTACCCTCTGGTGGGTCACTAAGAATCCGAACCAGCTGCGAGGAATTCAAGTCATGAATGGCGCCGTTGCTTTGGTGGTTGTTGTAATCTGTTTGGAGATTAGAGTTGTTTTCCATTCATTTGGGAGATACATTCAGGTGCCTCCGCCTTTGAATTACCTTTTGGTGACTACTACAATGCTTGGAGGTGCAGCTGGAGCTGGTGCCTATGCGCTGGGTATGATATCTGATGCCTTCAGCTCCCCTTGCTTTCACTGCTCTGGTTGTTGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.74

Weight (kDa)

8.29

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 89, 166, 230
AciI CCGC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 39, 40
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 3 cut(s) 7, 77, 181
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 4 cut(s) 64, 221, 227, 267
AluI AGCT 4 cut(s) 64, 221, 227, 267
ApeKI GCWGC 2 cut(s) 64, 218
ApoI RAATTY 1 cut(s) 72
AspLEI GCGC 2 cut(s) 92, 241
AsuHPI GGTGA 1 cut(s) 205
BanI GGYRCC 3 cut(s) 89, 166, 230
BbvI GCAGC 2 cut(s) 51, 230
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 2 cut(s) 65, 219
BlsI GCNGC 2 cut(s) 66, 220
BmiI GGNNCC 3 cut(s) 91, 168, 232
BmsI GCATC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 40
BseLI CCNNNNNNNGG 2 cut(s) 39, 40
BseXI GCAGC 2 cut(s) 51, 230
BseYI CCCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 237
BshNI GGYRCC 3 cut(s) 89, 166, 230
BslI CCNNNNNNNGG 2 cut(s) 39, 40
Bsp1407I TGTACA 1 cut(s) 23
BspACI CCGC 1 cut(s) 173
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 3 cut(s) 91, 168, 232
BspT107I GGYRCC 3 cut(s) 89, 166, 230
BsrGI TGTACA 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 2 cut(s) 92, 241
BstMWI GCNNNNNNNGC 3 cut(s) 224, 273, 282
BstNSI RCATGY 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 51, 230
BstXI CCANNNNNNTGG 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
CciI TCATGA 1 cut(s) 81
CfoI GCGC 2 cut(s) 92, 241
Csp6I GTAC 1 cut(s) 24
CviAII CATG 2 cut(s) 17, 82
CviJI RGCY 4 cut(s) 64, 221, 227, 267
CviKI_1 RGCY 4 cut(s) 64, 221, 227, 267
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 48
DinI GGCGCC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 162
Eco32I GATATC 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 72
EcoRV GATATC 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
FaeI CATG 2 cut(s) 20, 85
FaiI YATR 4 cut(s) 18, 83, 237, 248
FatI CATG 2 cut(s) 16, 81
Fnu4HI GCNGC 2 cut(s) 65, 219
Fsp4HI GCNGC 2 cut(s) 65, 219
GlaI GCGC 2 cut(s) 91, 240
GluI GCNGC 2 cut(s) 65, 219
GsaI CCCAGC 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 93
HhaI GCGC 2 cut(s) 92, 241
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 20, 85
Hin6I GCGC 2 cut(s) 90, 239
HinP1I GCGC 2 cut(s) 90, 239
HinfI GANTC 1 cut(s) 52
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 57, 256
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 273, 282
HpyF3I CTNAG 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 20, 85
HspAI GCGC 2 cut(s) 90, 239
KasI GGCGCC 1 cut(s) 89
LmnI GCTCC 2 cut(s) 224, 272
LpnPI CCDG 7 cut(s) 22, 74, 149, 207, 213, 227, 273
Lsp1109I GCAGC 2 cut(s) 51, 230
LweI GCATC 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 43, 193
MluCI AATT 3 cut(s) 72, 181, 298
Mly113I GGCGCC 1 cut(s) 90
MnlI CCTC 4 cut(s) 44, 62, 180, 206
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 2 cut(s) 64, 221
MwoI GCNNNNNNNGC 3 cut(s) 224, 273, 282
NarI GGCGCC 1 cut(s) 90
NlaIII CATG 2 cut(s) 20, 85
NlaIV GGNNCC 3 cut(s) 91, 168, 232
NmuCI GTSAC 2 cut(s) 43, 193
NspI RCATGY 1 cut(s) 20
PagI TCATGA 1 cut(s) 81
PciI ACATGT 1 cut(s) 16
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 66, 220
PluTI GGCGCC 1 cut(s) 93
PscI ACATGT 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 91, 168, 232
PvuII CAGCTG 2 cut(s) 64, 221
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 2 cut(s) 65, 219
SetI ASST 7 cut(s) 66, 168, 189, 217, 223, 229, 269
SfaNI GCATC 1 cut(s) 247
SfoI GGCGCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 3 cut(s) 72, 181, 298
SsiI CCGC 1 cut(s) 173
SspDI GGCGCC 1 cut(s) 89
TasI AATT 3 cut(s) 72, 181, 298
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 2 cut(s) 43, 193
TseI GCWGC 2 cut(s) 64, 218
Tsp45I GTSAC 2 cut(s) 43, 193
TspDTI ATGAA 2 cut(s) 98, 135
TspRI CASTG 1 cut(s) 287
XapI RAATTY 1 cut(s) 72
XceI RCATGY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.