AT1G11800

endonuclease exonuclease phosphatase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003730
Physical Location & Seq
Reverse (-)
3985184 .. 3987290
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11800.1

Sequence Viewer

Length: 1326 bp
ATGTCAACAACAATCCGATTTCTGAGAATTGTCACAAGTCGAGCAATGTCGTCGTCTTGGTCCTGCAACAAATGTACTTTCCTCAATTCTGCGTCTCAGAAACTCAATTGCATGATCTGCTTGGCTCCTGTATCTCTCCCTTCTTTGTCTCCTCCTCCACCTTCTCTCTCAATTTCCGCGAACGATGAAGCTAAATGGGCTTGCAAGGCCTGTACTTTTTTGAACACGTACAAGAACTCAATCTGTGACGTCTGTGGAACACGATCGCCAACGTCTTCTCTCTTGGGATTTCAGGATTTGACTGATTCGGGTCTCGAGAGTAACGACGCTGATTCCTCCGTCGGGTCTGTTTTCTTTCCTCTGCGGCGGTGTATCAAGCGTAAAGCTATGGATGATGACGTCGTCGAGGTCGATGGTGCTTCTGTTGTTTGCTCTGAATCGCAAGGTGTCATGAAGAAGAACAAAGAGATTGAAACGAAAGGGGTAGCTTCTGATTCAGGAACACCTTTAACTTGCTTGAAGATCTTGAGCTACAATGTTTGGTTTCGTGAAGACCTTGAGTTGAATCTAAGGATGAGAGCGATTGGTCATCTTATTCAGCTTCATTCTCCTCATCTCATATGTTTTCAGGAAGTCACTCCTGAGATATATGATATTTTCCGCAAGTCGAATTGGTGGAAAGCGTATTCTTGTTCTGTCTCAGTTGATGTGGCAGTTTCGAGAGGCTACTACTGCATGCTGTTGAGCAAGTTGGGAGTGAAATCTTTCAGCAGCAAAAGCTTTGGGAACTCGATAATGGGAAGAGAACTATCTATCGCAGAAGTTGAAGTTCCAGGGAGAAAGCCACTTGTTTTTGCAACTAGCCATCTTGAGAGTCCCTGTCCAGGTCCTCCAAAATGGGACCAAATGTTCAGTCGAGAACGCGTTGAACAAGCCAAGGAGGCAATTGAGATTCTCAGACCTAATGCCAATGTGATATTCGGGGGAGACATGAACTGGTGCGACAAGCTAGATGGGAAGTTTCCTTTGCCAGACAAATGGGTGGATGTTTGGGAGGTTTTGAAACCAGGTGATTTGGGTTTTACATATGACACAAAAGCAAACCCAATGTTGTCCGGTAACCGGGCATTGCAGAAACGGTTAGACCGGATTTTGTGTCGTCTGGATGATTACAAGCTTGGTGGAATCGAGATGGTTGGGAAAGAGGCCATTCCTGGTTTATCATATGTAAAAGAGAAGAAAGTGAGGGGTGACATTAAGAAGTTAGAGCTTCCGGTGTTGCCTAGTGATCATTTCGGTCTGCTTGTAACCCTTTCGCCAAAATGA

Protein Analysis

441

Amino Acids

49.0

Weight (kDa)

8.46

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 176 - 431 6.2e-19 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 252, 402
AccII CGCG 2 cut(s) 179, 924
AciI CCGC 4 cut(s) 177, 364, 367, 661
AcyI GRCGYC 2 cut(s) 249, 399
AfaI GTAC 3 cut(s) 76, 214, 230
AfiI CCNNNNNNNGG 3 cut(s) 342, 884, 1122
AflIII ACRYGT 2 cut(s) 225, 922
AgsI TTSAA 7 cut(s) 223, 473, 520, 565, 827, 929, 1063
AjnI CCWGG 4 cut(s) 832, 883, 1066, 1213
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
AloI GAACNNNNNNTCC 2 cut(s) 893, 925
AluBI AGCT 9 cut(s) 191, 386, 488, 531, 601, 780, 1009, 1177, 1270
AluI AGCT 9 cut(s) 191, 386, 488, 531, 601, 780, 1009, 1177, 1270
Alw26I GTCTC 5 cut(s) 99, 153, 317, 703, 981
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 2 cut(s) 207, 1206
ApeKI GCWGC 1 cut(s) 771
ArsI GACNNNNNNTTYG 2 cut(s) 898, 930
Asp700I GAANNNNTTC 1 cut(s) 764
AspS9I GGNCC 3 cut(s) 60, 887, 901
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 2 cut(s) 1082, 1262
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 3 cut(s) 60, 887, 901
BbsI GAAGAC 2 cut(s) 267, 558
BbvI GCAGC 1 cut(s) 783
BccI CCATC 4 cut(s) 407, 873, 1007, 1186
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BciT130I CCWGG 4 cut(s) 834, 885, 1068, 1215
BclI TGATCA 1 cut(s) 1288
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 5 cut(s) 99, 153, 317, 703, 981
BfaI CTAG 3 cut(s) 861, 1010, 1284
BglI GCCNNNNNGGC 1 cut(s) 941
BglII AGATCT 1 cut(s) 522
BisI GCNGC 2 cut(s) 365, 772
BlsI GCNGC 2 cut(s) 366, 773
Bme1390I CCNGG 5 cut(s) 834, 885, 1068, 1124, 1215
Bme18I GGWCC 3 cut(s) 60, 887, 901
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 3 cut(s) 60, 887, 901
BmiI GGNNCC 2 cut(s) 126, 902
BmrFI CCNGG 5 cut(s) 834, 885, 1068, 1124, 1215
BpiI GAAGAC 2 cut(s) 267, 558
BpuEI CTTGAG 3 cut(s) 547, 578, 890
BpuMI CCSGG 1 cut(s) 1124
BsaAI YACGTR 1 cut(s) 228
BsaHI GRCGYC 2 cut(s) 249, 399
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 833, 936
BsaWI WCCGGW 3 cut(s) 1115, 1146, 1273
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 884, 1122
Bse1I ACTGG 1 cut(s) 1001
Bse3DI GCAATG 2 cut(s) 51, 1127
BseBI CCWGG 4 cut(s) 834, 885, 1068, 1215
BseDI CCNNGG 2 cut(s) 833, 936
BseGI GGATG 4 cut(s) 397, 579, 1051, 1171
BseLI CCNNNNNNNGG 3 cut(s) 342, 884, 1122
BseMI GCAATG 2 cut(s) 51, 1127
BseMII CTCAG 5 cut(s) 14, 110, 633, 714, 970
BseNI ACTGG 1 cut(s) 1001
BseRI GAGGAG 3 cut(s) 141, 144, 600
BseXI GCAGC 1 cut(s) 783
Bsh1236I CGCG 2 cut(s) 179, 924
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 2 cut(s) 209, 1208
BsiEI CGRYCG 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 4 cut(s) 1116, 1123, 1147, 1274
BslFI GGGAC 2 cut(s) 861, 914
BslI CCNNNNNNNGG 3 cut(s) 342, 884, 1122
BsmAI GTCTC 5 cut(s) 99, 153, 317, 703, 981
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 861, 914
BsnI GGCC 2 cut(s) 209, 1208
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 314
Bsp143I GATC 4 cut(s) 114, 263, 522, 1288
BspACI CCGC 4 cut(s) 177, 364, 367, 661
BspANI GGCC 2 cut(s) 209, 1208
BspCNI CTCAG 5 cut(s) 15, 109, 634, 713, 969
BspFNI CGCG 2 cut(s) 179, 924
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 126, 902
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 2 cut(s) 51, 1127
BsrI ACTGG 1 cut(s) 1001
BssECI CCNNGG 2 cut(s) 833, 936
BssMI GATC 4 cut(s) 114, 263, 522, 1288
BssNI GRCGYC 2 cut(s) 249, 399
BssT1I CCWWGG 1 cut(s) 936
Bst2UI CCWGG 4 cut(s) 834, 885, 1068, 1215
Bst4CI ACNGT 1 cut(s) 1140
Bst6I CTCTTC 1 cut(s) 796
BstACI GRCGYC 2 cut(s) 249, 399
BstAPI GCANNNNNTGC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 202, 737
BstDEI CTNAG 6 cut(s) 23, 96, 569, 642, 700, 956
BstEII GGTNACC 1 cut(s) 1118
BstF5I GGATG 4 cut(s) 397, 579, 1051, 1171
BstFNI CGCG 2 cut(s) 179, 924
BstKTI GATC 4 cut(s) 117, 266, 525, 1291
BstMAI GTCTC 5 cut(s) 99, 153, 317, 703, 981
BstMBI GATC 4 cut(s) 114, 263, 522, 1288
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 6 cut(s) 117, 197, 206, 732, 777, 941
BstNI CCWGG 4 cut(s) 834, 885, 1068, 1215
BstNSI RCATGY 1 cut(s) 739
BstPI GGTNACC 1 cut(s) 1118
BstSCI CCNGG 5 cut(s) 832, 883, 1066, 1122, 1213
BstUI CGCG 2 cut(s) 179, 924
BstV1I GCAGC 1 cut(s) 783
BstV2I GAAGAC 2 cut(s) 267, 558
BstX2I RGATCY 1 cut(s) 522
BstXI CCANNNNNNTGG 1 cut(s) 1038
BstYI RGATCY 1 cut(s) 522
BsuRI GGCC 2 cut(s) 209, 1208
BtsCI GGATG 4 cut(s) 397, 579, 1051, 1171
Cac8I GCNNGC 2 cut(s) 202, 737
CciI TCATGA 1 cut(s) 450
Cfr13I GGNCC 3 cut(s) 60, 887, 901
CseI GACGC 2 cut(s) 81, 335
CsiI ACCWGGT 1 cut(s) 1066
Csp6I GTAC 3 cut(s) 75, 213, 229
CspCI CAANNNNNGTGG 2 cut(s) 1162, 1197
CviAII CATG 4 cut(s) 112, 451, 736, 991
CviQI GTAC 3 cut(s) 75, 213, 229
DdeI CTNAG 6 cut(s) 23, 96, 569, 642, 700, 956
DpnI GATC 4 cut(s) 116, 265, 524, 1290
DpnII GATC 4 cut(s) 114, 263, 522, 1288
Eam1104I CTCTTC 1 cut(s) 796
EarI CTCTTC 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 936
Eco147I AGGCCT 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 3 cut(s) 60, 887, 901
Eco88I CYCGRG 1 cut(s) 314
Eco91I GGTNACC 1 cut(s) 1118
EcoO109I RGGNCCY 1 cut(s) 887
EcoO65I GGTNACC 1 cut(s) 1118
EcoRII CCWGG 4 cut(s) 832, 883, 1066, 1213
EcoT14I CCWWGG 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 936
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 4 cut(s) 115, 454, 739, 994
FaqI GGGAC 2 cut(s) 861, 914
FatI CATG 4 cut(s) 111, 450, 735, 990
FauNDI CATATG 3 cut(s) 620, 1087, 1225
FbaI TGATCA 1 cut(s) 1288
Fnu4HI GCNGC 2 cut(s) 365, 772
FokI GGATG 4 cut(s) 404, 586, 1058, 1178
Fsp4HI GCNGC 2 cut(s) 365, 772
FspBI CTAG 3 cut(s) 861, 1010, 1284
GluI GCNGC 2 cut(s) 365, 772
HaeIII GGCC 2 cut(s) 209, 1208
HapII CCGG 4 cut(s) 1116, 1123, 1147, 1274
HgaI GACGC 2 cut(s) 81, 335
Hin1I GRCGYC 2 cut(s) 249, 399
Hin1II CATG 4 cut(s) 115, 454, 739, 994
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 2 cut(s) 778, 1175
HinfI GANTC 8 cut(s) 305, 332, 437, 494, 565, 874, 952, 1185
HpaII CCGG 4 cut(s) 1116, 1123, 1147, 1274
HphI GGTGA 2 cut(s) 1082, 1262
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 6 cut(s) 17, 24, 99, 436, 493, 959
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 5 cut(s) 55, 329, 344, 404, 407
HpyAV CCTTC 2 cut(s) 150, 171
HpyCH4III ACNGT 1 cut(s) 1140
HpyCH4IV ACGT 4 cut(s) 227, 249, 272, 399
HpyCH4V TGCA 6 cut(s) 66, 111, 204, 735, 857, 1132
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 197, 206, 732, 777, 941
HpyF3I CTNAG 6 cut(s) 23, 96, 569, 642, 700, 956
HpySE526I ACGT 4 cut(s) 227, 249, 272, 399
Hsp92I GRCGYC 2 cut(s) 249, 399
Hsp92II CATG 4 cut(s) 115, 454, 739, 994
Ksp22I TGATCA 1 cut(s) 1288
Kzo9I GATC 4 cut(s) 114, 263, 522, 1288
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 1 cut(s) 783
MabI ACCWGGT 1 cut(s) 1066
MaeI CTAG 3 cut(s) 861, 1010, 1284
MaeII ACGT 4 cut(s) 227, 249, 272, 399
MaeIII GTNAC 7 cut(s) 31, 245, 320, 634, 1118, 1250, 1306
MalI GATC 4 cut(s) 116, 265, 524, 1290
MboI GATC 4 cut(s) 114, 263, 522, 1288
MboII GAAGA 7 cut(s) 267, 466, 469, 532, 563, 813, 1249
MfeI CAATTG 2 cut(s) 106, 945
MflI RGATCY 1 cut(s) 522
MluCI AATT 6 cut(s) 27, 85, 106, 171, 670, 945
MluI ACGCGT 1 cut(s) 922
MlyI GAGTC 1 cut(s) 883
MroXI GAANNNNTTC 1 cut(s) 764
MseI TTAA 2 cut(s) 509, 1257
MspI CCGG 4 cut(s) 1116, 1123, 1147, 1274
MspR9I CCNGG 5 cut(s) 834, 885, 1068, 1124, 1215
MunI CAATTG 2 cut(s) 106, 945
MvaI CCWGG 4 cut(s) 834, 885, 1068, 1215
MvnI CGCG 2 cut(s) 179, 924
MwoI GCNNNNNNNGC 6 cut(s) 117, 197, 206, 732, 777, 941
NciI CCSGG 1 cut(s) 1124
NdeI CATATG 3 cut(s) 620, 1087, 1225
NdeII GATC 4 cut(s) 114, 263, 522, 1288
NlaIII CATG 4 cut(s) 115, 454, 739, 994
NlaIV GGNNCC 2 cut(s) 126, 902
NmuCI GTSAC 4 cut(s) 31, 245, 634, 1250
NspI RCATGY 1 cut(s) 739
PaeI GCATGC 1 cut(s) 739
PaeR7I CTCGAG 1 cut(s) 314
PagI TCATGA 1 cut(s) 450
PceI AGGCCT 1 cut(s) 209
PcsI WCGNNNNNNNCGW 2 cut(s) 321, 408
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 7 cut(s) 305, 332, 437, 494, 565, 952, 1185
PflFI GACNNNGTC 1 cut(s) 401
PkrI GCNGC 2 cut(s) 366, 773
Ple19I CGATCG 1 cut(s) 266
PleI GAGTC 1 cut(s) 882
PpsI GAGTC 1 cut(s) 882
Ppu21I YACGTR 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 887
Psp5II RGGWCCY 1 cut(s) 887
Psp6I CCWGG 4 cut(s) 832, 883, 1066, 1213
PspEI GGTNACC 1 cut(s) 1118
PspGI CCWGG 4 cut(s) 832, 883, 1066, 1213
PspN4I GGNNCC 2 cut(s) 126, 902
PspPI GGNCC 3 cut(s) 60, 887, 901
PspPPI RGGWCCY 1 cut(s) 887
PsuI RGATCY 1 cut(s) 522
PsyI GACNNNGTC 1 cut(s) 401
PvuI CGATCG 1 cut(s) 266
RsaI GTAC 3 cut(s) 76, 214, 230
RsaNI GTAC 3 cut(s) 75, 213, 229
SaqAI TTAA 2 cut(s) 509, 1257
SatI GCNGC 2 cut(s) 365, 772
Sau3AI GATC 4 cut(s) 114, 263, 522, 1288
Sau96I GGNCC 3 cut(s) 60, 887, 901
SchI GAGTC 1 cut(s) 883
ScrFI CCNGG 5 cut(s) 834, 885, 1068, 1124, 1215
SexAI ACCWGGT 1 cut(s) 1066
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 3 cut(s) 60, 887, 901
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 4 cut(s) 314, 526, 557, 869
SmoI CTYRAG 4 cut(s) 314, 526, 557, 869
SphI GCATGC 1 cut(s) 739
Sse9I AATT 6 cut(s) 27, 85, 106, 171, 670, 945
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 4 cut(s) 177, 364, 367, 661
SspMI CTAG 3 cut(s) 861, 1010, 1284
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 5 cut(s) 832, 883, 1066, 1122, 1213
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 1 cut(s) 1140
TaiI ACGT 4 cut(s) 230, 252, 275, 402
TaqI TCGA 9 cut(s) 40, 315, 405, 411, 668, 719, 791, 916, 1188
TaqII GACCGA 1 cut(s) 1286
TasI AATT 6 cut(s) 27, 85, 106, 171, 670, 945
TatI WGTACW 2 cut(s) 74, 212
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 7 cut(s) 305, 332, 437, 494, 565, 952, 1185
Tru1I TTAA 2 cut(s) 509, 1257
Tru9I TTAA 2 cut(s) 509, 1257
TseFI GTSAC 4 cut(s) 31, 245, 634, 1250
TseI GCWGC 1 cut(s) 771
Tsp45I GTSAC 4 cut(s) 31, 245, 634, 1250
TspDTI ATGAA 4 cut(s) 201, 467, 593, 1007
TspGWI ACGGA 1 cut(s) 328
Tth111I GACNNNGTC 1 cut(s) 401
VpaK11BI GGWCC 3 cut(s) 60, 887, 901
XceI RCATGY 1 cut(s) 739
XhoI CTCGAG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 3 cut(s) 861, 1010, 1284
ZraI GACGTC 2 cut(s) 250, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.