pycom05g31580

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
31288743 .. 31291832
3090 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g31580.3

Sequence Viewer

Length: 1623 bp
ATGAGGAAGCAGCAAAGCTCAAGCTCCTCTCCAATGGCGGTCACTAAGTTTCTCTCACTCTCAACCCTCCTCTTTTTCTTCGTCTTTGCATCCAAAGCCGCATCTTCTCCACCGACATTCAAAACCACCAAGCTGCAAAATCAGGACCAAGAAAAAGAGCCGTTCGTCGGAGTGAACATTGGCACCGACGTTTCGAATCTTCTGTCTCCGTCAGACCTCGTCTCGTTTCTGCAACTCCAGCAGATCAACCACATCCGCCTCTACGATGCCGATCCCGACATCCTCAAGGCCCTGTCCAAAACCAAGATCCGGGTCGTCATCAGCGTCCCCAACAACCAGCTCCTTGCCATCGGCTCTTCCAACACCACCGCCGCTTCCTGGGTCGGCCGAAACGTTGTCGCTTACTACCCCCAAACCCTCATCACTGGCATTGCGGTCGGCGACGAGGTGTTAACCACTGTGCCCTCTTCAGCTCCTCTGCTTCTTCCGGCAATTCAGTCGCTTTACAGTGCTTTAGTGGCTGCAAATTTACACACCCATGTGAAAATTTCGACCCCTCACGCCGCTTCGATAATTCTCGATCCGTTTCCGCCGTCTCAGGCGTTCTTCAACCAAAGCTTAACCCAAATTGTTCTCCCATTGCTTCAGTTCTTGTCGAAAACCGGGTCGCCGCTGATGATGAATCTCTATCCTTACTATGTGTTTATGCAGAACAAAGGTGTGGTGCCTCTTGACAATGCGCTTTTCAAGCCTCTTACGCCGTCGAAAGAGATGGTGGATCCCAATACTTTGCTACATTATACTAATGTGCTGGATGCCATGATTGATGCTGCTTATTTTTCCATGAAAAACCTTAATGTTACTGATGTGACGGTTCTTGTTTCGGAGAGCGGATGGCCTTCGAAGGGGGATTCTAAAGAGCCTTATGCTACTATCGACAATGCAGATACATACAATTCAAATCTTATCAAGCATGTTTTGGATCGTAGTGGAACCCCTTTGCACCCTGAGATTACTTCAAATGTGTACATTTATGAATTGTTCAATGAGGATTTGAGGTCTCCGCCAGTGTCTGAGGCTAATTGGGGCCTGTTTTATGGGAATTCAAGTGCGGTGTATTTGCTTCACGTATCAGGGAGTGGGTCTTTTTTGGCTAATGACACAACAAACCAGACCTACTGCATTGCCATGGATGGGATGGATGGAAAGAGTTTGCAGGCTGCATTGGATTGGGCATGTGGACCTGGGCGGGCAAATTGCTCGGAGATTCAGCCGGGGGAGGATTGTTACTCTCCGAATAATGTGAAAAGCCATGCTTCGTATGCATTCGATAGCTATTACCAGAAGCAAGGGAGGGCTGCAGGGTCTTGTGACTTCCAAGGCGTAGCCACCATTACCACCACTGACCCAAGTCACGGGAGCTGTATATTTCCCGGAAGTAAGAAGGTGAGCAACAAGACGAGGCAGACGGTGAACTCGACACATTCGAGTAGCGGAGTAGACAGATTAAGATTTGTTGCCTTCGGCAGCAGCAGAATAAGTGCCATCAGCGGGATGTTATCCATATTTTTTGTTGTAATCTTCTATAGTTTGTTATTCTTACCTTTTGTCACTCCATGCTGA

Protein Analysis

541

Amino Acids

58.75

Weight (kDa)

6.41

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 182, 724
AccBSI CCGCTC 1 cut(s) 891
AccI GTMKAC 1 cut(s) 1500
AclI AACGTT 1 cut(s) 393
AclWI GGATC 6 cut(s) 266, 301, 575, 773, 786, 990
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 3 cut(s) 526, 546, 1102
AcuI CTGAAG 2 cut(s) 453, 629
AfaI GTAC 1 cut(s) 1028
AfiI CCNNNNNNNGG 7 cut(s) 167, 309, 378, 905, 1194, 1415, 1551
AgsI TTSAA 7 cut(s) 121, 610, 748, 960, 1020, 1045, 1107
AjnI CCWGG 2 cut(s) 377, 1243
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 8 cut(s) 18, 24, 133, 340, 473, 618, 1335, 1422
AluI AGCT 8 cut(s) 18, 24, 133, 340, 473, 618, 1335, 1422
Alw26I GTCTC 4 cut(s) 210, 226, 600, 1065
AlwI GGATC 6 cut(s) 266, 301, 575, 773, 786, 990
AlwNI CAGNNNCTG 1 cut(s) 1073
AoxI GGCC 4 cut(s) 288, 385, 896, 1087
ApeKI GCWGC 8 cut(s) 10, 133, 521, 830, 1220, 1358, 1527, 1530
ApoI RAATTY 3 cut(s) 526, 546, 1102
ArsI GACNNNNNNTTYG 4 cut(s) 188, 220, 650, 682
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 4 cut(s) 145, 289, 1087, 1241
AsuC2I CCSGG 4 cut(s) 311, 664, 1275, 1434
AsuHPI GGTGA 2 cut(s) 1459, 1483
AsuII TTCGAA 2 cut(s) 194, 902
AvaII GGWCC 2 cut(s) 145, 1241
BaeGI GKGCMC 1 cut(s) 465
BamHI GGATCC 1 cut(s) 778
BanI GGYRCC 2 cut(s) 182, 724
BbvI GCAGC 8 cut(s) 22, 120, 508, 817, 1207, 1345, 1539, 1542
BccI CCATC 7 cut(s) 356, 766, 888, 1187, 1192, 1196, 1553
BceAI ACGGC 3 cut(s) 145, 577, 745
BcgI CGANNNNNNTGC 6 cut(s) 418, 452, 480, 514, 1242, 1276
BciT130I CCWGG 2 cut(s) 379, 1245
BcnI CCSGG 4 cut(s) 311, 664, 1275, 1434
BcoDI GTCTC 4 cut(s) 210, 226, 600, 1065
BfmI CTRYAG 2 cut(s) 1359, 1585
Bme1390I CCNGG 6 cut(s) 311, 379, 664, 1245, 1275, 1434
Bme18I GGWCC 2 cut(s) 145, 1241
BmgT120I GGNCC 4 cut(s) 145, 289, 1087, 1241
BmiI GGNNCC 5 cut(s) 184, 726, 780, 994, 1088
BmrFI CCNGG 6 cut(s) 311, 379, 664, 1245, 1275, 1434
BmsI GCATC 5 cut(s) 98, 110, 256, 805, 817
BoxI GACNNNNGTC 1 cut(s) 1410
BpmI CTGGAG 1 cut(s) 221
Bpu14I TTCGAA 2 cut(s) 194, 902
BpuEI CTTGAG 2 cut(s) 4, 269
BpuMI CCSGG 4 cut(s) 311, 664, 1275, 1434
BsaAI YACGTR 1 cut(s) 1129
BsaBI GATNNNNATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 1065
BsaJI CCNNGG 5 cut(s) 378, 1188, 1244, 1274, 1378
Bsc4I CCNNNNNNNGG 7 cut(s) 167, 309, 378, 905, 1194, 1415, 1551
Bse1I ACTGG 2 cut(s) 430, 1067
Bse3DI GCAATG 3 cut(s) 429, 638, 1182
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 2 cut(s) 379, 1245
BseDI CCNNGG 5 cut(s) 378, 1188, 1244, 1274, 1378
BseGI GGATG 9 cut(s) 89, 252, 279, 820, 899, 1198, 1203, 1207, 1560
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 7 cut(s) 167, 309, 378, 905, 1194, 1415, 1551
BseMI GCAATG 3 cut(s) 429, 638, 1182
BseMII CTCAG 3 cut(s) 611, 999, 1065
BseNI ACTGG 2 cut(s) 430, 1067
BseRI GAGGAG 3 cut(s) 16, 59, 465
BseSI GKGCMC 1 cut(s) 465
BseX3I CGGCCG 1 cut(s) 385
BseXI GCAGC 8 cut(s) 22, 120, 508, 817, 1207, 1345, 1539, 1542
Bsh1285I CGRYCG 2 cut(s) 388, 438
BshFI GGCC 4 cut(s) 290, 387, 898, 1089
BshNI GGYRCC 2 cut(s) 182, 724
BsiEI CGRYCG 2 cut(s) 388, 438
BsiSI CCGG 5 cut(s) 310, 488, 663, 1274, 1434
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 7 cut(s) 167, 309, 378, 905, 1194, 1415, 1551
BsmAI GTCTC 4 cut(s) 210, 226, 600, 1065
BsmBI CGTCTC 2 cut(s) 226, 600
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 1325
BsnI GGCC 4 cut(s) 290, 387, 898, 1089
Bso31I GGTCTC 1 cut(s) 1065
Bsp119I TTCGAA 2 cut(s) 194, 902
Bsp1286I GDGCHC 1 cut(s) 465
Bsp1407I TGTACA 1 cut(s) 1026
Bsp143I GATC 6 cut(s) 243, 271, 306, 580, 778, 982
Bsp19I CCATGG 1 cut(s) 1188
BspANI GGCC 4 cut(s) 290, 387, 898, 1089
BspCNI CTCAG 3 cut(s) 610, 1000, 1066
BspLI GGNNCC 5 cut(s) 184, 726, 780, 994, 1088
BspMAI CTGCAG 1 cut(s) 1363
BspPI GGATC 6 cut(s) 266, 301, 575, 773, 786, 990
BspQI GCTCTTC 1 cut(s) 361
BspT104I TTCGAA 2 cut(s) 194, 902
BspT107I GGYRCC 2 cut(s) 182, 724
BspTNI GGTCTC 1 cut(s) 1065
BsrBI CCGCTC 1 cut(s) 891
BsrDI GCAATG 3 cut(s) 429, 638, 1182
BsrGI TGTACA 1 cut(s) 1026
BsrI ACTGG 2 cut(s) 430, 1067
BssECI CCNNGG 5 cut(s) 378, 1188, 1244, 1274, 1378
BssMI GATC 6 cut(s) 243, 271, 306, 580, 778, 982
BssT1I CCWWGG 2 cut(s) 1188, 1378
Bst2UI CCWGG 2 cut(s) 379, 1245
Bst4CI ACNGT 4 cut(s) 460, 509, 874, 1471
Bst6I CTCTTC 2 cut(s) 361, 472
BstAUI TGTACA 1 cut(s) 1026
BstBAI YACGTR 1 cut(s) 1129
BstBI TTCGAA 2 cut(s) 194, 902
BstC8I GCNNGC 2 cut(s) 1218, 1251
BstDEI CTNAG 4 cut(s) 45, 597, 1008, 1074
BstDSI CCRYGG 1 cut(s) 1188
BstF5I GGATG 9 cut(s) 89, 252, 279, 820, 899, 1198, 1203, 1207, 1560
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 6 cut(s) 246, 274, 309, 583, 781, 985
BstMAI GTCTC 4 cut(s) 210, 226, 600, 1065
BstMBI GATC 6 cut(s) 243, 271, 306, 580, 778, 982
BstMCI CGRYCG 2 cut(s) 388, 438
BstMWI GCNNNNNNNGC 6 cut(s) 95, 238, 518, 748, 757, 1322
BstNI CCWGG 2 cut(s) 379, 1245
BstNSI RCATGY 2 cut(s) 977, 1239
BstPAI GACNNNNGTC 1 cut(s) 1410
BstSCI CCNGG 6 cut(s) 309, 377, 662, 1243, 1273, 1432
BstSFI CTRYAG 2 cut(s) 1359, 1585
BstSLI GKGCMC 1 cut(s) 465
BstV1I GCAGC 8 cut(s) 22, 120, 508, 817, 1207, 1345, 1539, 1542
BstX2I RGATCY 2 cut(s) 306, 778
BstYI RGATCY 2 cut(s) 306, 778
BstZI CGGCCG 1 cut(s) 385
BsuRI GGCC 4 cut(s) 290, 387, 898, 1089
BtgI CCRYGG 1 cut(s) 1188
BtsCI GGATG 9 cut(s) 89, 252, 279, 820, 899, 1198, 1203, 1207, 1560
BtsIMutI CAGTG 5 cut(s) 423, 456, 514, 1074, 1401
Cac8I GCNNGC 2 cut(s) 1218, 1251
CaiI CAGNNNCTG 1 cut(s) 1073
CfoI GCGC 1 cut(s) 742
Cfr13I GGNCC 4 cut(s) 145, 289, 1087, 1241
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 1027
CviAII CATG 8 cut(s) 539, 820, 844, 974, 1189, 1236, 1313, 1617
CviQI GTAC 1 cut(s) 1027
DdeI CTNAG 4 cut(s) 45, 597, 1008, 1074
DpnI GATC 6 cut(s) 245, 273, 308, 582, 780, 984
DpnII GATC 6 cut(s) 243, 271, 306, 580, 778, 982
EaeI YGGCCR 1 cut(s) 385
EagI CGGCCG 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 361, 472
EarI CTCTTC 2 cut(s) 361, 472
EciI GGCGGA 3 cut(s) 245, 579, 1053
EclXI CGGCCG 1 cut(s) 385
Eco130I CCWWGG 2 cut(s) 1188, 1378
Eco31I GGTCTC 1 cut(s) 1065
Eco47I GGWCC 2 cut(s) 145, 1241
Eco52I CGGCCG 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 453, 629
EcoO109I RGGNCCY 2 cut(s) 289, 1087
EcoRI GAATTC 1 cut(s) 1102
EcoRII CCWGG 2 cut(s) 377, 1243
EcoT14I CCWWGG 2 cut(s) 1188, 1378
EcoT22I ATGCAT 1 cut(s) 1327
ErhI CCWWGG 2 cut(s) 1188, 1378
Esp3I CGTCTC 2 cut(s) 226, 600
FaeI CATG 8 cut(s) 542, 823, 847, 977, 1192, 1239, 1316, 1620
FalI AAGNNNNNCTT 2 cut(s) 1300, 1332
FaqI GGGAC 1 cut(s) 311
FatI CATG 8 cut(s) 538, 819, 843, 973, 1188, 1235, 1312, 1616
FauI CCCGC 2 cut(s) 1242, 1544
FblI GTMKAC 1 cut(s) 1500
FokI GGATG 9 cut(s) 76, 239, 266, 827, 906, 1205, 1210, 1214, 1567
GlaI GCGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 4 cut(s) 290, 387, 898, 1089
HapII CCGG 5 cut(s) 310, 488, 663, 1274, 1434
HgaI GACGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 742
Hin1II CATG 8 cut(s) 542, 823, 847, 977, 1192, 1239, 1316, 1620
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 616
HinfI GANTC 4 cut(s) 196, 682, 911, 1267
HpaI GTTAAC 1 cut(s) 453
HpaII CCGG 5 cut(s) 310, 488, 663, 1274, 1434
HphI GGTGA 2 cut(s) 1459, 1483
Hpy166II GTNNAC 6 cut(s) 175, 453, 1027, 1241, 1474, 1501
Hpy188I TCNGA 6 cut(s) 170, 214, 886, 1075, 1264, 1296
Hpy188III TCNNGA 4 cut(s) 143, 275, 578, 731
Hpy8I GTNNAC 6 cut(s) 175, 453, 1027, 1241, 1474, 1501
Hpy99I CGWCG 4 cut(s) 170, 191, 446, 766
HpyAV CCTTC 4 cut(s) 898, 909, 1438, 1531
HpyCH4III ACNGT 4 cut(s) 460, 509, 874, 1471
HpyCH4IV ACGT 3 cut(s) 189, 393, 1128
HpyF10VI GCNNNNNNNGC 6 cut(s) 95, 238, 518, 748, 757, 1322
HpyF3I CTNAG 4 cut(s) 45, 597, 1008, 1074
HpySE526I ACGT 3 cut(s) 189, 393, 1128
Hsp92II CATG 8 cut(s) 542, 823, 847, 977, 1192, 1239, 1316, 1620
HspAI GCGC 1 cut(s) 740
KspAI GTTAAC 1 cut(s) 453
Kzo9I GATC 6 cut(s) 243, 271, 306, 580, 778, 982
LguI GCTCTTC 1 cut(s) 361
LmnI GCTCC 4 cut(s) 29, 345, 478, 1419
Lsp1109I GCAGC 8 cut(s) 22, 120, 508, 817, 1207, 1345, 1539, 1542
LweI GCATC 5 cut(s) 98, 110, 256, 805, 817
MaeII ACGT 3 cut(s) 189, 393, 1128
MaeIII GTNAC 7 cut(s) 40, 859, 868, 1286, 1370, 1412, 1609
MalI GATC 6 cut(s) 245, 273, 308, 582, 780, 984
MbiI CCGCTC 1 cut(s) 891
MboI GATC 6 cut(s) 243, 271, 306, 580, 778, 982
MboII GAAGA 8 cut(s) 70, 96, 191, 348, 459, 476, 598, 1573
MflI RGATCY 2 cut(s) 306, 778
MhlI GDGCHC 1 cut(s) 465
MmeI TCCRAC 2 cut(s) 148, 384
Mph1103I ATGCAT 1 cut(s) 1327
MseI TTAA 4 cut(s) 452, 620, 855, 1508
MslI CAYNNNNRTG 3 cut(s) 537, 539, 1187
MspA1I CMGCKG 2 cut(s) 673, 1551
MspI CCGG 5 cut(s) 310, 488, 663, 1274, 1434
MspR9I CCNGG 6 cut(s) 311, 379, 664, 1245, 1275, 1434
Mva1269I GAATGC 1 cut(s) 1325
MvaI CCWGG 2 cut(s) 379, 1245
MwoI GCNNNNNNNGC 6 cut(s) 95, 238, 518, 748, 757, 1322
NciI CCSGG 4 cut(s) 311, 664, 1275, 1434
NcoI CCATGG 1 cut(s) 1188
NdeII GATC 6 cut(s) 243, 271, 306, 580, 778, 982
NlaIII CATG 8 cut(s) 542, 823, 847, 977, 1192, 1239, 1316, 1620
NlaIV GGNNCC 5 cut(s) 184, 726, 780, 994, 1088
NmuCI GTSAC 5 cut(s) 40, 868, 1370, 1412, 1609
NsiI ATGCAT 1 cut(s) 1327
NspI RCATGY 2 cut(s) 977, 1239
NspV TTCGAA 2 cut(s) 194, 902
OliI CACNNNNGTG 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 4 cut(s) 321, 390, 1475, 1484
PctI GAATGC 1 cut(s) 1325
PfeI GAWTC 4 cut(s) 196, 682, 911, 1267
PflFI GACNNNGTC 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 1432
Ppu21I YACGTR 1 cut(s) 1129
PshAI GACNNNNGTC 1 cut(s) 1410
Psp1406I AACGTT 1 cut(s) 393
Psp6I CCWGG 2 cut(s) 377, 1243
PspGI CCWGG 2 cut(s) 377, 1243
PspN4I GGNNCC 5 cut(s) 184, 726, 780, 994, 1088
PspPI GGNCC 4 cut(s) 145, 289, 1087, 1241
PstI CTGCAG 1 cut(s) 1363
PstNI CAGNNNCTG 1 cut(s) 1073
PsuI RGATCY 2 cut(s) 306, 778
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 1 cut(s) 1028
RsaNI GTAC 1 cut(s) 1027
RseI CAYNNNNRTG 3 cut(s) 537, 539, 1187
SapI GCTCTTC 1 cut(s) 361
SaqAI TTAA 4 cut(s) 452, 620, 855, 1508
Sau3AI GATC 6 cut(s) 243, 271, 306, 580, 778, 982
Sau96I GGNCC 4 cut(s) 145, 289, 1087, 1241
ScrFI CCNGG 6 cut(s) 311, 379, 664, 1245, 1275, 1434
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 5 cut(s) 98, 110, 256, 805, 817
SfcI CTRYAG 2 cut(s) 1359, 1585
SfuI TTCGAA 2 cut(s) 194, 902
SinI GGWCC 2 cut(s) 145, 1241
SmiMI CAYNNNNRTG 3 cut(s) 537, 539, 1187
SmlI CTYRAG 2 cut(s) 19, 284
SmoI CTYRAG 2 cut(s) 19, 284
StyD4I CCNGG 6 cut(s) 309, 377, 662, 1243, 1273, 1432
StyI CCWWGG 2 cut(s) 1188, 1378
TaaI ACNGT 4 cut(s) 460, 509, 874, 1471
TaiI ACGT 3 cut(s) 192, 396, 1131
TatI WGTACW 1 cut(s) 1026
TauI GCSGC 4 cut(s) 101, 374, 566, 673
TfiI GAWTC 4 cut(s) 196, 682, 911, 1267
Tru1I TTAA 4 cut(s) 452, 620, 855, 1508
Tru9I TTAA 4 cut(s) 452, 620, 855, 1508
TscAI CASTG 5 cut(s) 430, 463, 514, 1074, 1408
TseFI GTSAC 5 cut(s) 40, 868, 1370, 1412, 1609
TseI GCWGC 8 cut(s) 10, 133, 521, 830, 1220, 1358, 1527, 1530
Tsp45I GTSAC 5 cut(s) 40, 868, 1370, 1412, 1609
TspDTI ATGAA 3 cut(s) 695, 860, 1050
TspGWI ACGGA 2 cut(s) 198, 573
TspRI CASTG 5 cut(s) 430, 463, 514, 1074, 1408
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 145, 1241
XapI RAATTY 3 cut(s) 526, 546, 1102
XceI RCATGY 2 cut(s) 977, 1239
XcmI CCANNNNNNNNNTGG 1 cut(s) 1195
XmiI GTMKAC 1 cut(s) 1500
Zsp2I ATGCAT 1 cut(s) 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.