Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022235.1

Orthogroup ID

OG0003730

Physical Location & Seq

Genomic Coordinates Reverse (-)

553 .. 2585

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgtttgcagagagcactagttcagttgagtctgcaaaggatgatgccaaattcagtttgtttcgaggagttaaggtgtctgataagaaggttactgtatcagagagcagtagttccgggtcttctggaatgggtttgagtacactcaaggttttgacttacaatgtttggtttagagaagacttagaaatgcacaagagaatgaaagctattggtgaccttgtcctacagcattgcccagatgtcatttgctttcaggaggttacccctgatatatatgacatctttcaacaatctaactggtggaaaatgtatcaatgctcaattccaaatcagatggcgatttcacaaccttacttttgcatgcagttaagcaaattgcaagtgaaagccttcagctgtagaccattttcatactctgcgatggggagagaactctgtgtcactgaagttgaagtacagggggacaaacatcttgttgttgccactagccatcttgagagtccttgcccaggccctccaaaatgggatcagatgtacagcaaggaacgtgtagatcaggcaaaggaggccctcaacttcttaaagaagaacccaaatgtgattttttgcggtgacatgaactgggatgacaagttggatggccaagttcctttacctgacaactggattgatgcttgggtggagttacgaccaggggaagatggattgacgtatgataccaagtccaaccagatgttgtctggtaacaggtcactgcggaagcgactagatcgattcttttgctgtctgcacgatttcagggtgagcaaaattgaaatgattgggatgaaagcaataccaggtctctcatatatcaaggaaaagaaagtgaaaggggagattaagaagctggagctccctgttttgcctagcgatcattatggcttgcttttgacaatctgtggccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008081 GO:0008150 GO:0008152 GO:0009987 GO:0016604 GO:0016605 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0070259 GO:0070260 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos zf-RanBP

Protein Analysis

317

Amino Acids

36.1

Weight (kDa)

6.98

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11800
fragaria_vesca	FvH4_3g01860 FvH4_3g01880 FvH4_3g01880 FvH4_3g01880
malus_domestica	MD05G1348300.v1.1 MD10G1323100.v1.1 MD10G1323300.v1.1
prunus_persica	Prupe.4G019000_v2.0.a1 Prupe.4G019000_v2.0.a1 Prupe.4G019100_v2.0.a1
pyrus_communis	pycom05g31580 pycom10g27350 pycom10g27360
rosa_chinensis	RchiOBHm_Chr5g0002731 RchiOBHm_Chr5g0002751
rosa_laevigata	RLG00000031055
rosa_multiflora	Rmu_sc0013603.1_g000021 Rmu_sc0022235.1_g000001 Rmu_sc0042337.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073150
rosa_rugosa	Rorug04G0398800 Rorug04G0398900 Rorug04G0399000
rosa_samantha	Rh5AG022000 Rh5AG022100 Rh5BG024900 Rh5BG025000 Rh5CG024300 Rh5CG024400 Rh5DG023300 Rh5DG023400
rosa_wichuraiana	Rw5G002050 Rw5G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	2 cut(s)	612, 760
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	2 cut(s)	643, 946
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	379, 468
AfaI	GTAC	3 cut(s)	142, 459, 539
AfiI	CCNNNNNNNGG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	3 cut(s)	290, 455, 818
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	3 cut(s)	511, 694, 841
AluBI	AGCT	4 cut(s)	209, 399, 892, 898
AluI	AGCT	4 cut(s)	209, 399, 892, 898
Alw21I	GWGCWC	2 cut(s)	17, 900
Alw26I	GTCTC	1 cut(s)	851
AlwI	GGATC	1 cut(s)	537
AoxI	GGCC	4 cut(s)	514, 570, 643, 946
ApoI	RAATTY	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	515, 571
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	3 cut(s)	227, 626, 817
BalI	TGGCCA	2 cut(s)	645, 948
BanII	GRGCYC	1 cut(s)	900
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
BbsI	GAAGAC	2 cut(s)	114, 186
Bbv12I	GWGCWC	2 cut(s)	17, 900
BccI	CCATC	5 cut(s)	331, 418, 501, 635, 698
BcgI	CGANNNNNNTGC	2 cut(s)	765, 799
BciT130I	CCWGG	3 cut(s)	513, 696, 843
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	851
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	4 cut(s)	18, 489, 770, 912
BfmI	CTRYAG	2 cut(s)	227, 400
Bme1390I	CCNGG	4 cut(s)	118, 513, 696, 843
BmgT120I	GGNCC	2 cut(s)	515, 571
BmrFI	CCNGG	4 cut(s)	118, 513, 696, 843
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	2 cut(s)	34, 664
BmuI	ACTGGG	1 cut(s)	634
BpiI	GAAGAC	2 cut(s)	114, 186
BpmI	CTGGAG	1 cut(s)	914
BpuEI	CTTGAG	2 cut(s)	131, 518
BpuMI	CCSGG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	775
BsaI	GGTCTC	1 cut(s)	851
BsaJI	CCNNGG	2 cut(s)	511, 695
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	4 cut(s)	305, 629, 671, 949
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	513, 696, 843
BseCI	ATCGAT	1 cut(s)	775
BseDI	CCNNGG	2 cut(s)	511, 695
BseGI	GGATG	4 cut(s)	46, 634, 646, 834
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMI	GCAATG	1 cut(s)	232
BseNI	ACTGG	4 cut(s)	305, 629, 671, 949
BseRI	GAGGAG	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	776
BshFI	GGCC	4 cut(s)	516, 572, 645, 948
BshVI	ATCGAT	1 cut(s)	775
BsiHKAI	GWGCWC	2 cut(s)	17, 900
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	1 cut(s)	851
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	4 cut(s)	516, 572, 645, 948
Bso31I	GGTCTC	1 cut(s)	851
Bsp1286I	GDGCHC	2 cut(s)	17, 900
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	529, 556, 772, 916
BspACI	CCGC	2 cut(s)	612, 760
BspANI	GGCC	4 cut(s)	516, 572, 645, 948
BspDI	ATCGAT	1 cut(s)	775
BspPI	GGATC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	232
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	4 cut(s)	305, 629, 671, 949
BssECI	CCNNGG	2 cut(s)	511, 695
BssMI	GATC	4 cut(s)	529, 556, 772, 916
Bst2UI	CCWGG	3 cut(s)	513, 696, 843
Bst4CI	ACNGT	1 cut(s)	97
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	365, 929
BstDEI	CTNAG	1 cut(s)	184
BstEII	GGTNACC	2 cut(s)	215, 262
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	46, 634, 646, 834
BstKTI	GATC	4 cut(s)	532, 559, 775, 919
BstMAI	GTCTC	1 cut(s)	851
BstMBI	GATC	4 cut(s)	529, 556, 772, 916
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstNI	CCWGG	3 cut(s)	513, 696, 843
BstNSI	RCATGY	1 cut(s)	367
BstPI	GGTNACC	2 cut(s)	215, 262
BstSCI	CCNGG	4 cut(s)	116, 511, 694, 841
BstSFI	CTRYAG	2 cut(s)	227, 400
BstV2I	GAAGAC	2 cut(s)	114, 186
Bsu15I	ATCGAT	1 cut(s)	775
BsuRI	GGCC	4 cut(s)	516, 572, 645, 948
BsuTUI	ATCGAT	1 cut(s)	775
BtgZI	GCGATG	1 cut(s)	437
BtsCI	GGATG	4 cut(s)	46, 634, 646, 834
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	2 cut(s)	444, 755
Cac8I	GCNNGC	2 cut(s)	365, 929
Cfr13I	GGNCC	2 cut(s)	515, 571
ClaI	ATCGAT	1 cut(s)	775
CsiI	ACCWGGT	1 cut(s)	841
Csp6I	GTAC	3 cut(s)	141, 458, 538
CviAII	CATG	2 cut(s)	364, 619
CviQI	GTAC	3 cut(s)	141, 458, 538
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	4 cut(s)	531, 558, 774, 918
DpnII	GATC	4 cut(s)	529, 556, 772, 916
EaeI	YGGCCR	2 cut(s)	643, 946
Ecl136II	GAGCTC	1 cut(s)	898
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	851
Eco53kI	GAGCTC	1 cut(s)	898
Eco57I	CTGAAG	2 cut(s)	379, 468
Eco91I	GGTNACC	2 cut(s)	215, 262
EcoICRI	GAGCTC	1 cut(s)	898
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	2 cut(s)	515, 571
EcoO65I	GGTNACC	2 cut(s)	215, 262
EcoRII	CCWGG	3 cut(s)	511, 694, 841
EcoT38I	GRGCYC	1 cut(s)	900
FaeI	CATG	2 cut(s)	367, 622
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	363, 618
FblI	GTMKAC	1 cut(s)	403
FokI	GGATG	4 cut(s)	53, 641, 653, 841
FriOI	GRGCYC	1 cut(s)	900
FspBI	CTAG	4 cut(s)	18, 489, 770, 912
GsuI	CTGGAG	1 cut(s)	914
HaeIII	GGCC	4 cut(s)	516, 572, 645, 948
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	2 cut(s)	367, 622
HinfI	GANTC	3 cut(s)	29, 502, 777
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	3 cut(s)	227, 626, 817
Hpy166II	GTNNAC	2 cut(s)	143, 404
Hpy188I	TCNGA	4 cut(s)	82, 103, 336, 534
Hpy188III	TCNNGA	3 cut(s)	126, 257, 497
Hpy8I	GTNNAC	2 cut(s)	143, 404
HpyAV	CCTTC	2 cut(s)	82, 403
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	550, 713
HpyCH4V	TGCA	7 cut(s)	8, 35, 193, 363, 367, 382, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	1 cut(s)	184
HpySE526I	ACGT	2 cut(s)	550, 713
Hsp92II	CATG	2 cut(s)	367, 622
Kzo9I	GATC	4 cut(s)	529, 556, 772, 916
LmnI	GCTCC	2 cut(s)	895, 903
LweI	GCATC	2 cut(s)	34, 664
MabI	ACCWGGT	1 cut(s)	841
MaeI	CTAG	4 cut(s)	18, 489, 770, 912
MaeII	ACGT	2 cut(s)	550, 713
MaeIII	GTNAC	8 cut(s)	91, 215, 262, 442, 614, 687, 746, 753
MalI	GATC	4 cut(s)	531, 558, 774, 918
MboI	GATC	4 cut(s)	529, 556, 772, 916
MboII	GAAGA	4 cut(s)	114, 191, 601, 713
MhlI	GDGCHC	2 cut(s)	17, 900
MlsI	TGGCCA	2 cut(s)	645, 948
MluCI	AATT	4 cut(s)	50, 324, 377, 813
MluNI	TGGCCA	2 cut(s)	645, 948
MlyI	GAGTC	2 cut(s)	38, 511
MmeI	TCCRAC	2 cut(s)	618, 753
MnlI	CCTC	5 cut(s)	59, 253, 528, 562, 584
Mox20I	TGGCCA	2 cut(s)	645, 948
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	2 cut(s)	645, 948
MseI	TTAA	4 cut(s)	72, 371, 584, 885
Msp20I	TGGCCA	2 cut(s)	645, 948
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	4 cut(s)	118, 513, 696, 843
MvaI	CCWGG	3 cut(s)	513, 696, 843
MwoI	GCNNNNNNNGC	1 cut(s)	569
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	4 cut(s)	529, 556, 772, 916
NlaIII	CATG	2 cut(s)	367, 622
NmuCI	GTSAC	4 cut(s)	215, 442, 614, 753
NspI	RCATGY	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	777
PflFI	GACNNNGTC	1 cut(s)	221
PleI	GAGTC	2 cut(s)	37, 510
PpsI	GAGTC	2 cut(s)	37, 510
Psp124BI	GAGCTC	1 cut(s)	900
Psp6I	CCWGG	3 cut(s)	511, 694, 841
PspEI	GGTNACC	2 cut(s)	215, 262
PspGI	CCWGG	3 cut(s)	511, 694, 841
PspPI	GGNCC	2 cut(s)	515, 571
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	399
RsaI	GTAC	3 cut(s)	142, 459, 539
RsaNI	GTAC	3 cut(s)	141, 458, 538
SacI	GAGCTC	1 cut(s)	900
SaqAI	TTAA	4 cut(s)	72, 371, 584, 885
Sau3AI	GATC	4 cut(s)	529, 556, 772, 916
Sau96I	GGNCC	2 cut(s)	515, 571
SchI	GAGTC	2 cut(s)	38, 511
ScrFI	CCNGG	4 cut(s)	118, 513, 696, 843
SduI	GDGCHC	2 cut(s)	17, 900
SexAI	ACCWGGT	1 cut(s)	841
SfaNI	GCATC	2 cut(s)	34, 664
SfcI	CTRYAG	2 cut(s)	227, 400
SmlI	CTYRAG	2 cut(s)	146, 497
SmoI	CTYRAG	2 cut(s)	146, 497
SpeI	ACTAGT	1 cut(s)	17
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	4 cut(s)	50, 324, 377, 813
SsiI	CCGC	2 cut(s)	612, 760
SspMI	CTAG	4 cut(s)	18, 489, 770, 912
SstI	GAGCTC	1 cut(s)	900
StyD4I	CCNGG	4 cut(s)	116, 511, 694, 841
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	2 cut(s)	553, 716
TaqI	TCGA	2 cut(s)	64, 775
TasI	AATT	4 cut(s)	50, 324, 377, 813
TatI	WGTACW	3 cut(s)	140, 457, 537
TfiI	GAWTC	1 cut(s)	777
Tru1I	TTAA	4 cut(s)	72, 371, 584, 885
Tru9I	TTAA	4 cut(s)	72, 371, 584, 885
TscAI	CASTG	2 cut(s)	451, 762
TseFI	GTSAC	4 cut(s)	215, 442, 614, 753
Tsp45I	GTSAC	4 cut(s)	215, 442, 614, 753
TspDTI	ATGAA	4 cut(s)	218, 402, 635, 845
TspRI	CASTG	2 cut(s)	451, 762
Tth111I	GACNNNGTC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	740
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	4 cut(s)	18, 489, 770, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.