MD05G1348300.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
46678533 .. 46682086
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1348300.v1.1.491

Sequence Viewer

Length: 1623 bp
ATGAGGAAGCAGCAAAGCTCAAGCTCCTCTCCAATGGCGGTCACTAAGTTTCTCTCACTCTCAACCCTCCTCTTCTTCTTCGTCTTTGCATCCAAAGCCACATCTTCTCCACCGACATTCAAAACCACCAAGCTGCAAAATCAGGACCAAGAAAAAGAGCCGTTCGTCGGAGTGAACATTGGCACCGACGTTTCGAATCTTCTGTCTCCGTCGGACCTCGTTTCGTTTCTGCAACTCCAGCAGATCAACCACGTCCGCCTCTACGATGCCGATCCGGACATCCTCAAAGCCCTGTCCAAAACCAAGATCCGGGTCGTCATCAGCGTCCCCAACAACCAGCTCCTCGCCATCGGCTCTTCCAACACCACCGCCGCTTCCTGGGTCGGCCGAAACGTCGTCGCTTACTACCCCCAAACCCTCATCACTGGCATTGCGGTCGGCGACGAGGTGTTAACCACCGTGCCTTCTTCAGCTCCTCTGCTTCTTCCGGCAATTCAGTCGCTTTACAGTGCTTTAGTGGCTGCAAATTTACACACCCATGTGAAAATTTCGACCCCTCACGCCGCTTCGATAATTCTCGATCCGTTTCCGCCGTCACAGGCGTTCTTCAACCAAAGCTTAACCCAAATTGTTCTCCCATTGCTTCAGTTCTTGTCGAAAACCGGGTCGCCGCTGATGATGAATCTCTATCCTTACTATGTGTTTATGCAGAACAAAGGTGTGGTGCCTCTTGACAATGCGCTTTTCAAGCCTCTTACGCCGTCGAAAGAGATGGTGGATCCCAATACTTTGCTACATTATACTAATGTGCTGGATGCCATGATTGATGCTGCTTATTTTTCCATGAAAAACCTTAATATTACTGATGTGACGGTTCTTGTTTCGGAGAGCGGATGGCCTTCGAAGGGGGATTCTAAAGAGCCTTATGCTACTATCGACAATGCAGATACATACAATTCAAATCTTATCAAGCATGTTTTGGATCGTAGTGGAACCCCTTTGCACCCTGAGATTACTTCAGATGTGTACATTTATGAATTGTTCAATGAGGATTTGAGGTCTCCGCCAGTGTCCGAGGCCAATTGGGGCCTGTTTTATGGGAATTCGAGTGCGGTGTATTTGCTTCACGTATCAGGGAGTGGGTCTTTTTTGGCTAATGACACAACAAACCAGACATACTGCATTGCCATGGATGGGATGGATGGAAAGAGTTTGCAGGCTGCATTGGATTGGGCATGTGGACCTGGGCGGGCAAATTGCTCGGAGATTCAGCCGGGGGAGGATTGTTACTCTCCGAATAATGTGAAAAGCCATGCTTCATATGCATTTGATAGCTATTACCAGAAGCAAGGGAGGGCTGCCGGGTCTTGTGACTTCAATGGCGTAGCCACCATTACCACCACTGACCCAAGTCACGGGAGCTGTATATTTCCCGGAAGTAAGAAGGTGAGCAACAAGACGAGGCAGACGGTGAACTCGACACATTCCAGTAGCGGAGTAGACAGATTAAGATTTGTTGCCTTCGGCAGCAGCAGAATAAGTGCCATCAGCGAGAAGTTATCCGTATTTTTTGTTGTAATCTTCTACAGTTTGTTATTCTTTCCTTTTGTGACTCCATGCTGA

Protein Analysis

541

Amino Acids

58.85

Weight (kDa)

6.26

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 56 - 375 7.3e-72 Glycosyl hydrolases family 17
X8 PF07983 393 - 464 2.9e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 182, 724
AccBSI CCGCTC 1 cut(s) 891
AccI GTMKAC 1 cut(s) 1500
AccIII TCCGGA 1 cut(s) 274
AclWI GGATC 6 cut(s) 266, 301, 575, 773, 786, 990
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 3 cut(s) 526, 546, 1102
AcuI CTGAAG 3 cut(s) 453, 629, 1002
AfaI GTAC 1 cut(s) 1028
AfiI CCNNNNNNNGG 6 cut(s) 167, 309, 378, 905, 1194, 1415
AgsI TTSAA 6 cut(s) 121, 610, 748, 960, 1045, 1378
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 2 cut(s) 377, 1243
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 8 cut(s) 18, 24, 133, 340, 473, 618, 1335, 1422
AluI AGCT 8 cut(s) 18, 24, 133, 340, 473, 618, 1335, 1422
Alw26I GTCTC 2 cut(s) 210, 1065
AlwI GGATC 6 cut(s) 266, 301, 575, 773, 786, 990
Aor13HI TCCGGA 1 cut(s) 274
AoxI GGCC 4 cut(s) 385, 896, 1077, 1087
ApeKI GCWGC 8 cut(s) 10, 133, 521, 830, 1220, 1358, 1527, 1530
ApoI RAATTY 3 cut(s) 526, 546, 1102
ArsI GACNNNNNNTTYG 4 cut(s) 188, 220, 650, 682
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 4 cut(s) 145, 214, 1087, 1241
AsuC2I CCSGG 5 cut(s) 311, 664, 1275, 1363, 1434
AsuHPI GGTGA 2 cut(s) 1459, 1483
AsuII TTCGAA 2 cut(s) 194, 902
AvaII GGWCC 3 cut(s) 145, 214, 1241
BamHI GGATCC 1 cut(s) 778
BanI GGYRCC 2 cut(s) 182, 724
BbvI GCAGC 8 cut(s) 22, 120, 508, 817, 1207, 1345, 1539, 1542
BccI CCATC 7 cut(s) 356, 766, 888, 1187, 1192, 1196, 1553
BceAI ACGGC 3 cut(s) 145, 577, 745
BcgI CGANNNNNNTGC 6 cut(s) 418, 452, 480, 514, 1242, 1276
BciT130I CCWGG 2 cut(s) 379, 1245
BcnI CCSGG 5 cut(s) 311, 664, 1275, 1363, 1434
BcoDI GTCTC 2 cut(s) 210, 1065
BfmI CTRYAG 1 cut(s) 1585
Bme1390I CCNGG 7 cut(s) 311, 379, 664, 1245, 1275, 1363, 1434
Bme18I GGWCC 3 cut(s) 145, 214, 1241
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 4 cut(s) 145, 214, 1087, 1241
BmiI GGNNCC 5 cut(s) 184, 726, 780, 994, 1088
BmrFI CCNGG 7 cut(s) 311, 379, 664, 1245, 1275, 1363, 1434
BmsI GCATC 4 cut(s) 98, 256, 805, 817
BoxI GACNNNNGTC 1 cut(s) 1410
BpmI CTGGAG 1 cut(s) 221
Bpu14I TTCGAA 2 cut(s) 194, 902
BpuEI CTTGAG 1 cut(s) 4
BpuMI CCSGG 5 cut(s) 311, 664, 1275, 1363, 1434
BsaAI YACGTR 1 cut(s) 1129
BsaBI GATNNNNATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 1065
BsaJI CCNNGG 5 cut(s) 378, 1074, 1188, 1244, 1274
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 6 cut(s) 167, 309, 378, 905, 1194, 1415
Bse1I ACTGG 3 cut(s) 430, 1067, 1488
Bse3DI GCAATG 3 cut(s) 429, 638, 1182
Bse8I GATNNNNATC 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 2 cut(s) 379, 1245
BseDI CCNNGG 5 cut(s) 378, 1074, 1188, 1244, 1274
BseGI GGATG 7 cut(s) 89, 279, 820, 899, 1198, 1203, 1207
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 6 cut(s) 167, 309, 378, 905, 1194, 1415
BseMI GCAATG 3 cut(s) 429, 638, 1182
BseMII CTCAG 1 cut(s) 999
BseNI ACTGG 3 cut(s) 430, 1067, 1488
BseRI GAGGAG 4 cut(s) 16, 59, 332, 465
BseX3I CGGCCG 1 cut(s) 385
BseXI GCAGC 8 cut(s) 22, 120, 508, 817, 1207, 1345, 1539, 1542
Bsh1285I CGRYCG 2 cut(s) 388, 438
BshFI GGCC 4 cut(s) 387, 898, 1079, 1089
BshNI GGYRCC 2 cut(s) 182, 724
BsiEI CGRYCG 2 cut(s) 388, 438
BsiSI CCGG 7 cut(s) 275, 310, 488, 663, 1274, 1362, 1434
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 6 cut(s) 167, 309, 378, 905, 1194, 1415
BsmAI GTCTC 2 cut(s) 210, 1065
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 4 cut(s) 387, 898, 1079, 1089
Bso31I GGTCTC 1 cut(s) 1065
Bsp119I TTCGAA 2 cut(s) 194, 902
Bsp13I TCCGGA 1 cut(s) 274
Bsp1407I TGTACA 1 cut(s) 1026
Bsp143I GATC 6 cut(s) 243, 271, 306, 580, 778, 982
Bsp19I CCATGG 1 cut(s) 1188
BspANI GGCC 4 cut(s) 387, 898, 1079, 1089
BspCNI CTCAG 1 cut(s) 1000
BspEI TCCGGA 1 cut(s) 274
BspLI GGNNCC 5 cut(s) 184, 726, 780, 994, 1088
BspPI GGATC 6 cut(s) 266, 301, 575, 773, 786, 990
BspQI GCTCTTC 1 cut(s) 361
BspT104I TTCGAA 2 cut(s) 194, 902
BspT107I GGYRCC 2 cut(s) 182, 724
BspTNI GGTCTC 1 cut(s) 1065
BsrBI CCGCTC 1 cut(s) 891
BsrDI GCAATG 3 cut(s) 429, 638, 1182
BsrGI TGTACA 1 cut(s) 1026
BsrI ACTGG 3 cut(s) 430, 1067, 1488
BssECI CCNNGG 5 cut(s) 378, 1074, 1188, 1244, 1274
BssMI GATC 6 cut(s) 243, 271, 306, 580, 778, 982
BssT1I CCWWGG 1 cut(s) 1188
Bst2UI CCWGG 2 cut(s) 379, 1245
Bst4CI ACNGT 5 cut(s) 460, 509, 874, 1471, 1589
Bst6I CTCTTC 2 cut(s) 77, 361
BstAUI TGTACA 1 cut(s) 1026
BstBAI YACGTR 1 cut(s) 1129
BstBI TTCGAA 2 cut(s) 194, 902
BstC8I GCNNGC 2 cut(s) 1218, 1251
BstDEI CTNAG 2 cut(s) 45, 1008
BstDSI CCRYGG 1 cut(s) 1188
BstF5I GGATG 7 cut(s) 89, 279, 820, 899, 1198, 1203, 1207
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 6 cut(s) 246, 274, 309, 583, 781, 985
BstMAI GTCTC 2 cut(s) 210, 1065
BstMBI GATC 6 cut(s) 243, 271, 306, 580, 778, 982
BstMCI CGRYCG 2 cut(s) 388, 438
BstMWI GCNNNNNNNGC 6 cut(s) 95, 238, 518, 748, 757, 1322
BstNI CCWGG 2 cut(s) 379, 1245
BstNSI RCATGY 2 cut(s) 977, 1239
BstPAI GACNNNNGTC 1 cut(s) 1410
BstSCI CCNGG 7 cut(s) 309, 377, 662, 1243, 1273, 1361, 1432
BstSFI CTRYAG 1 cut(s) 1585
BstV1I GCAGC 8 cut(s) 22, 120, 508, 817, 1207, 1345, 1539, 1542
BstX2I RGATCY 2 cut(s) 306, 778
BstYI RGATCY 2 cut(s) 306, 778
BstZI CGGCCG 1 cut(s) 385
BsuRI GGCC 4 cut(s) 387, 898, 1079, 1089
BtgI CCRYGG 1 cut(s) 1188
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 7 cut(s) 89, 279, 820, 899, 1198, 1203, 1207
BtsIMutI CAGTG 4 cut(s) 423, 514, 1074, 1401
Cac8I GCNNGC 2 cut(s) 1218, 1251
CfoI GCGC 1 cut(s) 742
Cfr13I GGNCC 4 cut(s) 145, 214, 1087, 1241
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 1027
CviAII CATG 8 cut(s) 539, 820, 844, 974, 1189, 1236, 1313, 1617
CviQI GTAC 1 cut(s) 1027
DdeI CTNAG 2 cut(s) 45, 1008
DpnI GATC 6 cut(s) 245, 273, 308, 582, 780, 984
DpnII GATC 6 cut(s) 243, 271, 306, 580, 778, 982
EaeI YGGCCR 1 cut(s) 385
EagI CGGCCG 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 77, 361
EarI CTCTTC 2 cut(s) 77, 361
EciI GGCGGA 3 cut(s) 245, 579, 1053
EclXI CGGCCG 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 1188
Eco31I GGTCTC 1 cut(s) 1065
Eco47I GGWCC 3 cut(s) 145, 214, 1241
Eco52I CGGCCG 1 cut(s) 385
Eco57I CTGAAG 3 cut(s) 453, 629, 1002
EcoO109I RGGNCCY 1 cut(s) 1087
EcoRI GAATTC 1 cut(s) 1102
EcoRII CCWGG 2 cut(s) 377, 1243
EcoT14I CCWWGG 1 cut(s) 1188
EcoT22I ATGCAT 1 cut(s) 1327
ErhI CCWWGG 1 cut(s) 1188
FaeI CATG 8 cut(s) 542, 823, 847, 977, 1192, 1239, 1316, 1620
FalI AAGNNNNNCTT 2 cut(s) 1300, 1332
FaqI GGGAC 1 cut(s) 311
FatI CATG 8 cut(s) 538, 819, 843, 973, 1188, 1235, 1312, 1616
FauI CCCGC 1 cut(s) 1242
FauNDI CATATG 1 cut(s) 1321
FblI GTMKAC 1 cut(s) 1500
FokI GGATG 7 cut(s) 76, 266, 827, 906, 1205, 1210, 1214
GlaI GCGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 4 cut(s) 387, 898, 1079, 1089
HapII CCGG 7 cut(s) 275, 310, 488, 663, 1274, 1362, 1434
HgaI GACGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 742
Hin1II CATG 8 cut(s) 542, 823, 847, 977, 1192, 1239, 1316, 1620
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 616
HinfI GANTC 5 cut(s) 196, 682, 911, 1267, 1612
HpaI GTTAAC 1 cut(s) 453
HpaII CCGG 7 cut(s) 275, 310, 488, 663, 1274, 1362, 1434
HphI GGTGA 2 cut(s) 1459, 1483
Hpy166II GTNNAC 6 cut(s) 175, 453, 1027, 1241, 1474, 1501
Hpy188I TCNGA 7 cut(s) 170, 214, 886, 1021, 1075, 1264, 1296
Hpy188III TCNNGA 4 cut(s) 143, 275, 578, 731
Hpy8I GTNNAC 6 cut(s) 175, 453, 1027, 1241, 1474, 1501
Hpy99I CGWCG 7 cut(s) 170, 191, 214, 398, 401, 446, 766
HpyAV CCTTC 5 cut(s) 474, 898, 909, 1438, 1531
HpyCH4III ACNGT 5 cut(s) 460, 509, 874, 1471, 1589
HpyCH4IV ACGT 4 cut(s) 189, 252, 393, 1128
HpyF10VI GCNNNNNNNGC 6 cut(s) 95, 238, 518, 748, 757, 1322
HpyF3I CTNAG 2 cut(s) 45, 1008
HpySE526I ACGT 4 cut(s) 189, 252, 393, 1128
Hsp92II CATG 8 cut(s) 542, 823, 847, 977, 1192, 1239, 1316, 1620
HspAI GCGC 1 cut(s) 740
Kpn2I TCCGGA 1 cut(s) 274
KspAI GTTAAC 1 cut(s) 453
Kzo9I GATC 6 cut(s) 243, 271, 306, 580, 778, 982
LguI GCTCTTC 1 cut(s) 361
LmnI GCTCC 4 cut(s) 29, 345, 478, 1419
Lsp1109I GCAGC 8 cut(s) 22, 120, 508, 817, 1207, 1345, 1539, 1542
LweI GCATC 4 cut(s) 98, 256, 805, 817
MaeII ACGT 4 cut(s) 189, 252, 393, 1128
MaeIII GTNAC 7 cut(s) 40, 594, 868, 1286, 1370, 1412, 1609
MalI GATC 6 cut(s) 245, 273, 308, 582, 780, 984
MbiI CCGCTC 1 cut(s) 891
MboI GATC 6 cut(s) 243, 271, 306, 580, 778, 982
MfeI CAATTG 1 cut(s) 1081
MflI RGATCY 2 cut(s) 306, 778
MlyI GAGTC 1 cut(s) 1606
MmeI TCCRAC 3 cut(s) 148, 192, 384
Mph1103I ATGCAT 1 cut(s) 1327
MroI TCCGGA 1 cut(s) 274
MseI TTAA 4 cut(s) 452, 620, 855, 1508
MslI CAYNNNNRTG 3 cut(s) 537, 539, 1187
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 7 cut(s) 275, 310, 488, 663, 1274, 1362, 1434
MspR9I CCNGG 7 cut(s) 311, 379, 664, 1245, 1275, 1363, 1434
MunI CAATTG 1 cut(s) 1081
MvaI CCWGG 2 cut(s) 379, 1245
MwoI GCNNNNNNNGC 6 cut(s) 95, 238, 518, 748, 757, 1322
NciI CCSGG 5 cut(s) 311, 664, 1275, 1363, 1434
NcoI CCATGG 1 cut(s) 1188
NdeI CATATG 1 cut(s) 1321
NdeII GATC 6 cut(s) 243, 271, 306, 580, 778, 982
NlaIII CATG 8 cut(s) 542, 823, 847, 977, 1192, 1239, 1316, 1620
NlaIV GGNNCC 5 cut(s) 184, 726, 780, 994, 1088
NmuCI GTSAC 6 cut(s) 40, 594, 868, 1370, 1412, 1609
NsiI ATGCAT 1 cut(s) 1327
NspI RCATGY 2 cut(s) 977, 1239
NspV TTCGAA 2 cut(s) 194, 902
OliI CACNNNNGTG 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 3 cut(s) 321, 390, 1475
PfeI GAWTC 4 cut(s) 196, 682, 911, 1267
PfoI TCCNGGA 1 cut(s) 1432
PleI GAGTC 1 cut(s) 1606
PpsI GAGTC 1 cut(s) 1606
Ppu21I YACGTR 1 cut(s) 1129
PshAI GACNNNNGTC 1 cut(s) 1410
Psp6I CCWGG 2 cut(s) 377, 1243
PspGI CCWGG 2 cut(s) 377, 1243
PspN4I GGNNCC 5 cut(s) 184, 726, 780, 994, 1088
PspPI GGNCC 4 cut(s) 145, 214, 1087, 1241
PsuI RGATCY 2 cut(s) 306, 778
RsaI GTAC 1 cut(s) 1028
RsaNI GTAC 1 cut(s) 1027
RseI CAYNNNNRTG 3 cut(s) 537, 539, 1187
SapI GCTCTTC 1 cut(s) 361
SaqAI TTAA 4 cut(s) 452, 620, 855, 1508
Sau3AI GATC 6 cut(s) 243, 271, 306, 580, 778, 982
Sau96I GGNCC 4 cut(s) 145, 214, 1087, 1241
SchI GAGTC 1 cut(s) 1606
ScrFI CCNGG 7 cut(s) 311, 379, 664, 1245, 1275, 1363, 1434
SfaNI GCATC 4 cut(s) 98, 256, 805, 817
SfcI CTRYAG 1 cut(s) 1585
SfuI TTCGAA 2 cut(s) 194, 902
SinI GGWCC 3 cut(s) 145, 214, 1241
SmiMI CAYNNNNRTG 3 cut(s) 537, 539, 1187
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SspI AATATT 1 cut(s) 859
StyD4I CCNGG 7 cut(s) 309, 377, 662, 1243, 1273, 1361, 1432
StyI CCWWGG 1 cut(s) 1188
TaaI ACNGT 5 cut(s) 460, 509, 874, 1471, 1589
TaiI ACGT 4 cut(s) 192, 255, 396, 1131
TatI WGTACW 1 cut(s) 1026
TauI GCSGC 3 cut(s) 374, 566, 673
TfiI GAWTC 4 cut(s) 196, 682, 911, 1267
Tru1I TTAA 4 cut(s) 452, 620, 855, 1508
Tru9I TTAA 4 cut(s) 452, 620, 855, 1508
TscAI CASTG 4 cut(s) 430, 514, 1074, 1408
TseFI GTSAC 6 cut(s) 40, 594, 868, 1370, 1412, 1609
TseI GCWGC 8 cut(s) 10, 133, 521, 830, 1220, 1358, 1527, 1530
Tsp45I GTSAC 6 cut(s) 40, 594, 868, 1370, 1412, 1609
TspDTI ATGAA 4 cut(s) 695, 860, 1050, 1308
TspGWI ACGGA 3 cut(s) 198, 573, 1552
TspRI CASTG 4 cut(s) 430, 514, 1074, 1408
VpaK11BI GGWCC 3 cut(s) 145, 214, 1241
XapI RAATTY 3 cut(s) 526, 546, 1102
XceI RCATGY 2 cut(s) 977, 1239
XcmI CCANNNNNNNNNTGG 1 cut(s) 1195
XmiI GTMKAC 1 cut(s) 1500
Zsp2I ATGCAT 1 cut(s) 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.