Rh5AG022100

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
1534523 .. 1537669
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG022100.1

Sequence Viewer

Length: 1404 bp
ATGGCATATACTAAGCCCCACCTCTCAACCCTCTACTTCTTCTTCTTCTTGGTCATCCTCACTCTACTACTCTCCACATCCTCAAAAGCTCAATCCTCTCCTCAAATTCAGGAGGAAGACAGAGAGCCATTTGTTGGAGTGAATATAGGCACCGACGTTTCGAATCTCCTCTCCCCATCCGACCTCGTTTCGTTTCTCCAACTCCAGAAAATCACCCACATCCGTCTCTACGATGCCGACCCGGACATTCTCAAGGCCTTGGCCAAAACCAAGATCCGGGTCATCATCAGCGTACCCAATAACCAGCTCATCGCAATTGGGTCCTCCAACACCACCGCCGCTTCCTGGGTCGGCCGAAACGTCGTCGCTTACTACCCACAAACCCTAATCACGGGCATTGCGGTTGGGGATGAAGTCCTCACCACAGTGCCCTCTTCAGCTCCTCTGCTTGTTCCTGCAATTGAGTCCCTTTACAGTGCTCTAGTGGCTTCAAATTTACACACCAAGGTCAAGATTTCGACTCCCAATGCCGCCTCTATTATTCTTGACCCTTTCCCTCCTTCTCAGGCCTTCTTCAACCAGAGCTTGAGCGACATTGTGCTGCCTTTGCTTCGGTTCTTGTCGAGAACCGGGTCTCCCTTGATGATGAATCTGTACCCTTACTATGTGTTTATGCAGAACAAAGGTGTGGTGCCTTTGGATAATGCCCTGTTCAAGCCTTTGACGCCCTCCAAAGAAATGGTTGATCCCAACACTCTGCTTCATTATACGAATGTGTTGGATGCTATGATTGATGCCGCTTATTTTTCGATGAAGAATTTGAATGTGACTGATGTTATGGTGCTTGTTACCGAGAGTGGTTGGCCTTCAAAAGCTGATGCTAAGGAGCCTTATGCTACTATTGACAATGCCGACACTTACAATTCGAATTTGATTAAGCATGTTTTTGATCGTAGTGGGACACCTTTGCATCCTGAGACCACCTCAAGTGTGTTCCTTTATGAGTTGTTCAATGAAGATTTGAGGTCTCCGCCGGTTTCTGAGGCCAATTGGGGCTTGTTTTATGGCAATTCCAGCGCTGTGTATTTGCTTCATGTTTCGGGGAGTGGGACTTTTTTGGCTAATGATACAACAAACCAGACATTTTGCATTGCCATGGATGGGGTTGATGCAAAGACTTTGCAAGCAGCTTTGGATTGGGCTTGTGGACCGGGGCGGTCTAATTGCACAGAGATTCAGCCTGGGGAGAGTTGTTACTCTCCTAACAATGTGAAGAGCCATGCTTCTTATGCTTTTGATAGCTATTACCAGAAGCAAGGAAAGGCTGCTGGGTCTTGTGATTTCAAAGGTGTAGCCACCATTACCACCACTGACCCAAGTAAGTGCTCTACTTCTGCATTATAG

Protein Analysis

467

Amino Acids

50.85

Weight (kDa)

5.27

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 45 - 364 1.9e-69 Glycosyl hydrolases family 17
X8 PF07983 382 - 453 3.6e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 149, 691
AccB7I CCANNNNNTGG 1 cut(s) 134
AciI CCGC 7 cut(s) 336, 339, 401, 531, 798, 1031, 1216
AclWI GGATC 2 cut(s) 268, 740
AcoI YGGCCR 2 cut(s) 261, 352
AcsI RAATTY 4 cut(s) 105, 493, 817, 928
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 2 cut(s) 294, 656
AfeI AGCGCT 1 cut(s) 1078
AfiI CCNNNNNNNGG 5 cut(s) 134, 276, 345, 391, 1161
AgsI TTSAA 7 cut(s) 492, 577, 715, 823, 870, 1012, 1345
AjnI CCWGG 2 cut(s) 344, 1240
AleI CACNNNNGTG 1 cut(s) 425
AloI GAACNNNNNNTCC 2 cut(s) 619, 651
AluBI AGCT 7 cut(s) 89, 307, 440, 585, 875, 1190, 1302
AluI AGCT 7 cut(s) 89, 307, 440, 585, 875, 1190, 1302
Alw21I GWGCWC 2 cut(s) 481, 1388
Alw26I GTCTC 4 cut(s) 230, 639, 971, 1032
AlwI GGATC 2 cut(s) 268, 740
Aor51HI AGCGCT 1 cut(s) 1078
AoxI GGCC 6 cut(s) 255, 261, 352, 567, 863, 1044
ApeKI GCWGC 3 cut(s) 601, 1187, 1325
ApoI RAATTY 4 cut(s) 105, 493, 817, 928
AspLEI GCGC 1 cut(s) 1079
AspS9I GGNCC 2 cut(s) 321, 1208
AsuC2I CCSGG 4 cut(s) 242, 278, 631, 1212
AsuHPI GGTGA 2 cut(s) 205, 412
AsuII TTCGAA 2 cut(s) 161, 926
AvaII GGWCC 2 cut(s) 321, 1208
BaeGI GKGCMC 1 cut(s) 432
BalI TGGCCA 1 cut(s) 263
BanI GGYRCC 2 cut(s) 149, 691
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 481, 1388
BbvI GCAGC 3 cut(s) 588, 1199, 1312
BccI CCATC 2 cut(s) 184, 1154
BciT130I CCWGG 2 cut(s) 346, 1242
BcnI CCSGG 4 cut(s) 242, 278, 631, 1212
BcoDI GTCTC 4 cut(s) 230, 639, 971, 1032
BfaI CTAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 1080
BisI GCNGC 6 cut(s) 339, 531, 602, 798, 1188, 1326
BlsI GCNGC 6 cut(s) 340, 532, 603, 799, 1189, 1327
Bme1390I CCNGG 6 cut(s) 242, 278, 346, 631, 1212, 1242
Bme18I GGWCC 2 cut(s) 321, 1208
BmgT120I GGNCC 2 cut(s) 321, 1208
BmiI GGNNCC 4 cut(s) 151, 322, 693, 888
BmrFI CCNGG 6 cut(s) 242, 278, 346, 631, 1212, 1242
BmsI GCATC 6 cut(s) 223, 772, 784, 868, 979, 1159
BpiI GAAGAC 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 968, 1000
BpmI CTGGAG 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 882
Bpu14I TTCGAA 2 cut(s) 161, 926
BpuEI CTTGAG 3 cut(s) 236, 607, 970
BpuMI CCSGG 4 cut(s) 242, 278, 631, 1212
BsaHI GRCGYC 1 cut(s) 725
BsaI GGTCTC 3 cut(s) 639, 971, 1032
BsaJI CCNNGG 6 cut(s) 258, 345, 504, 1155, 1211, 1241
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 5 cut(s) 134, 276, 345, 391, 1161
Bse118I RCCGGY 1 cut(s) 1033
Bse3DI GCAATG 2 cut(s) 396, 1149
BseBI CCWGG 2 cut(s) 346, 1242
BseDI CCNNGG 6 cut(s) 258, 345, 504, 1155, 1211, 1241
BseGI GGATG 8 cut(s) 54, 77, 176, 219, 415, 787, 970, 1165
BseLI CCNNNNNNNGG 5 cut(s) 134, 276, 345, 391, 1161
BseMI GCAATG 2 cut(s) 396, 1149
BseMII CTCAG 3 cut(s) 578, 966, 1032
BseRI GAGGAG 3 cut(s) 90, 158, 432
BseSI GKGCMC 1 cut(s) 432
BseX3I CGGCCG 1 cut(s) 352
BseXI GCAGC 3 cut(s) 588, 1199, 1312
BseYI CCCAGC 1 cut(s) 1328
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 6 cut(s) 257, 263, 354, 569, 865, 1046
BshNI GGYRCC 2 cut(s) 149, 691
BsiEI CGRYCG 1 cut(s) 355
BsiHKAI GWGCWC 2 cut(s) 481, 1388
BsiSI CCGG 5 cut(s) 242, 277, 630, 1034, 1211
BslFI GGGAC 3 cut(s) 451, 973, 1123
BslI CCNNNNNNNGG 5 cut(s) 134, 276, 345, 391, 1161
BsmAI GTCTC 4 cut(s) 230, 639, 971, 1032
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 3 cut(s) 451, 973, 1123
BsnI GGCC 6 cut(s) 257, 263, 354, 569, 865, 1046
Bso31I GGTCTC 3 cut(s) 639, 971, 1032
Bsp119I TTCGAA 2 cut(s) 161, 926
Bsp1286I GDGCHC 3 cut(s) 432, 481, 1388
Bsp143I GATC 3 cut(s) 273, 745, 949
Bsp19I CCATGG 1 cut(s) 1155
BspACI CCGC 7 cut(s) 336, 339, 401, 531, 798, 1031, 1216
BspANI GGCC 6 cut(s) 257, 263, 354, 569, 865, 1046
BspCNI CTCAG 3 cut(s) 577, 967, 1033
BspLI GGNNCC 4 cut(s) 151, 322, 693, 888
BspPI GGATC 2 cut(s) 268, 740
BspQI GCTCTTC 1 cut(s) 1268
BspT104I TTCGAA 2 cut(s) 161, 926
BspT107I GGYRCC 2 cut(s) 149, 691
BspTNI GGTCTC 3 cut(s) 639, 971, 1032
BsrDI GCAATG 2 cut(s) 396, 1149
BsrFI RCCGGY 1 cut(s) 1033
BssAI RCCGGY 1 cut(s) 1033
BssECI CCNNGG 6 cut(s) 258, 345, 504, 1155, 1211, 1241
BssMI GATC 3 cut(s) 273, 745, 949
BssNI GRCGYC 1 cut(s) 725
BssT1I CCWWGG 3 cut(s) 258, 504, 1155
Bst2UI CCWGG 2 cut(s) 346, 1242
Bst4CI ACNGT 2 cut(s) 427, 476
Bst6I CTCTTC 2 cut(s) 439, 1268
BstACI GRCGYC 1 cut(s) 725
BstBI TTCGAA 2 cut(s) 161, 926
BstC8I GCNNGC 1 cut(s) 1185
BstDEI CTNAG 5 cut(s) 12, 564, 882, 975, 1041
BstDSI CCRYGG 1 cut(s) 1155
BstF5I GGATG 8 cut(s) 54, 77, 176, 219, 415, 787, 970, 1165
BstH2I RGCGCY 1 cut(s) 1080
BstHHI GCGC 1 cut(s) 1079
BstKTI GATC 3 cut(s) 276, 748, 952
BstMAI GTCTC 4 cut(s) 230, 639, 971, 1032
BstMBI GATC 3 cut(s) 273, 745, 949
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 5 cut(s) 485, 607, 724, 1074, 1289
BstNI CCWGG 2 cut(s) 346, 1242
BstNSI RCATGY 1 cut(s) 944
BstSCI CCNGG 6 cut(s) 240, 276, 344, 629, 1210, 1240
BstSLI GKGCMC 1 cut(s) 432
BstV1I GCAGC 3 cut(s) 588, 1199, 1312
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 352
BsuRI GGCC 6 cut(s) 257, 263, 354, 569, 865, 1046
BtgI CCRYGG 1 cut(s) 1155
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 8 cut(s) 54, 77, 176, 219, 415, 787, 970, 1165
BtsIMutI CAGTG 3 cut(s) 432, 481, 1368
Cac8I GCNNGC 1 cut(s) 1185
CfoI GCGC 1 cut(s) 1079
Cfr10I RCCGGY 1 cut(s) 1033
Cfr13I GGNCC 2 cut(s) 321, 1208
CseI GACGC 1 cut(s) 733
Csp6I GTAC 2 cut(s) 293, 655
CviAII CATG 4 cut(s) 941, 1094, 1156, 1280
CviQI GTAC 2 cut(s) 293, 655
DdeI CTNAG 5 cut(s) 12, 564, 882, 975, 1041
DpnI GATC 3 cut(s) 275, 747, 951
DpnII GATC 3 cut(s) 273, 745, 949
EaeI YGGCCR 2 cut(s) 261, 352
EagI CGGCCG 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 439, 1268
EarI CTCTTC 2 cut(s) 439, 1268
EciI GGCGGA 1 cut(s) 1020
EclXI CGGCCG 1 cut(s) 352
Eco130I CCWWGG 3 cut(s) 258, 504, 1155
Eco147I AGGCCT 2 cut(s) 257, 569
Eco31I GGTCTC 3 cut(s) 639, 971, 1032
Eco47I GGWCC 2 cut(s) 321, 1208
Eco47III AGCGCT 1 cut(s) 1078
Eco52I CGGCCG 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 321
EcoRII CCWGG 2 cut(s) 344, 1240
EcoT14I CCWWGG 3 cut(s) 258, 504, 1155
ErhI CCWWGG 3 cut(s) 258, 504, 1155
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 4 cut(s) 944, 1097, 1159, 1283
FaqI GGGAC 3 cut(s) 451, 973, 1123
FatI CATG 4 cut(s) 940, 1093, 1155, 1279
Fnu4HI GCNGC 6 cut(s) 339, 531, 602, 798, 1188, 1326
FokI GGATG 8 cut(s) 41, 64, 163, 206, 422, 794, 957, 1172
Fsp4HI GCNGC 6 cut(s) 339, 531, 602, 798, 1188, 1326
FspBI CTAG 1 cut(s) 482
GlaI GCGC 1 cut(s) 1078
GluI GCNGC 6 cut(s) 339, 531, 602, 798, 1188, 1326
GsaI CCCAGC 1 cut(s) 1332
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 1080
HaeIII GGCC 6 cut(s) 257, 263, 354, 569, 865, 1046
HapII CCGG 5 cut(s) 242, 277, 630, 1034, 1211
HgaI GACGC 1 cut(s) 733
HhaI GCGC 1 cut(s) 1079
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 4 cut(s) 944, 1097, 1159, 1283
Hin6I GCGC 1 cut(s) 1077
HinP1I GCGC 1 cut(s) 1077
HinfI GANTC 5 cut(s) 163, 464, 520, 649, 1234
HpaII CCGG 5 cut(s) 242, 277, 630, 1034, 1211
HphI GGTGA 2 cut(s) 205, 412
Hpy166II GTNNAC 1 cut(s) 1208
Hpy188I TCNGA 2 cut(s) 181, 1042
Hpy188III TCNNGA 6 cut(s) 110, 205, 511, 545, 624, 974
Hpy8I GTNNAC 1 cut(s) 1208
Hpy99I CGWCG 3 cut(s) 158, 365, 368
HpyAV CCTTC 3 cut(s) 570, 580, 876
HpyCH4III ACNGT 2 cut(s) 427, 476
HpyCH4IV ACGT 2 cut(s) 156, 360
HpyCH4V TGCA 8 cut(s) 458, 676, 970, 1149, 1172, 1183, 1227, 1397
HpyF10VI GCNNNNNNNGC 5 cut(s) 485, 607, 724, 1074, 1289
HpyF3I CTNAG 5 cut(s) 12, 564, 882, 975, 1041
HpySE526I ACGT 2 cut(s) 156, 360
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 4 cut(s) 944, 1097, 1159, 1283
HspAI GCGC 1 cut(s) 1077
Kzo9I GATC 3 cut(s) 273, 745, 949
LguI GCTCTTC 1 cut(s) 1268
LmnI GCTCC 2 cut(s) 445, 886
Lsp1109I GCAGC 3 cut(s) 588, 1199, 1312
LweI GCATC 6 cut(s) 223, 772, 784, 868, 979, 1159
MaeI CTAG 1 cut(s) 482
MaeII ACGT 2 cut(s) 156, 360
MaeIII GTNAC 3 cut(s) 826, 847, 1253
MalI GATC 3 cut(s) 275, 747, 951
MboI GATC 3 cut(s) 273, 745, 949
MboII GAAGA 9 cut(s) 31, 34, 37, 128, 426, 565, 826, 1028, 1285
MfeI CAATTG 3 cut(s) 315, 459, 1048
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 3 cut(s) 432, 481, 1388
MlsI TGGCCA 1 cut(s) 263
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 2 cut(s) 473, 514
MmeI TCCRAC 5 cut(s) 115, 204, 223, 351, 759
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 1 cut(s) 936
MslI CAYNNNNRTG 2 cut(s) 425, 1154
Msp20I TGGCCA 1 cut(s) 263
MspI CCGG 5 cut(s) 242, 277, 630, 1034, 1211
MspR9I CCNGG 6 cut(s) 242, 278, 346, 631, 1212, 1242
MunI CAATTG 3 cut(s) 315, 459, 1048
MvaI CCWGG 2 cut(s) 346, 1242
MwoI GCNNNNNNNGC 5 cut(s) 485, 607, 724, 1074, 1289
NciI CCSGG 4 cut(s) 242, 278, 631, 1212
NcoI CCATGG 1 cut(s) 1155
NdeII GATC 3 cut(s) 273, 745, 949
NlaIII CATG 4 cut(s) 944, 1097, 1159, 1283
NlaIV GGNNCC 4 cut(s) 151, 322, 693, 888
NmuCI GTSAC 1 cut(s) 826
NspI RCATGY 1 cut(s) 944
NspV TTCGAA 2 cut(s) 161, 926
OliI CACNNNNGTG 1 cut(s) 425
PceI AGGCCT 2 cut(s) 257, 569
PciSI GCTCTTC 1 cut(s) 1268
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PfeI GAWTC 3 cut(s) 163, 649, 1234
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 6 cut(s) 340, 532, 603, 799, 1189, 1327
PleI GAGTC 2 cut(s) 472, 514
PpsI GAGTC 2 cut(s) 472, 514
PpuMI RGGWCCY 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 344, 1240
PspFI CCCAGC 1 cut(s) 1328
PspGI CCWGG 2 cut(s) 344, 1240
PspN4I GGNNCC 4 cut(s) 151, 322, 693, 888
PspPI GGNCC 2 cut(s) 321, 1208
PspPPI RGGWCCY 1 cut(s) 321
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 2 cut(s) 294, 656
RsaNI GTAC 2 cut(s) 293, 655
RseI CAYNNNNRTG 2 cut(s) 425, 1154
SapI GCTCTTC 1 cut(s) 1268
SaqAI TTAA 1 cut(s) 936
SatI GCNGC 6 cut(s) 339, 531, 602, 798, 1188, 1326
Sau3AI GATC 3 cut(s) 273, 745, 949
Sau96I GGNCC 2 cut(s) 321, 1208
SchI GAGTC 2 cut(s) 473, 514
ScrFI CCNGG 6 cut(s) 242, 278, 346, 631, 1212, 1242
SduI GDGCHC 3 cut(s) 432, 481, 1388
SfaNI GCATC 6 cut(s) 223, 772, 784, 868, 979, 1159
SfuI TTCGAA 2 cut(s) 161, 926
SinI GGWCC 2 cut(s) 321, 1208
SmiMI CAYNNNNRTG 2 cut(s) 425, 1154
SmlI CTYRAG 3 cut(s) 251, 586, 985
SmoI CTYRAG 3 cut(s) 251, 586, 985
SseBI AGGCCT 2 cut(s) 257, 569
SsiI CCGC 7 cut(s) 336, 339, 401, 531, 798, 1031, 1216
SspMI CTAG 1 cut(s) 482
StuI AGGCCT 2 cut(s) 257, 569
StyD4I CCNGG 6 cut(s) 240, 276, 344, 629, 1210, 1240
StyI CCWWGG 3 cut(s) 258, 504, 1155
TaaI ACNGT 2 cut(s) 427, 476
TaiI ACGT 2 cut(s) 159, 363
TaqI TCGA 5 cut(s) 161, 518, 623, 809, 926
TauI GCSGC 3 cut(s) 341, 533, 800
TfiI GAWTC 3 cut(s) 163, 649, 1234
Tru1I TTAA 1 cut(s) 936
Tru9I TTAA 1 cut(s) 936
TscAI CASTG 3 cut(s) 432, 481, 1375
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 3 cut(s) 601, 1187, 1325
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 6 cut(s) 426, 662, 752, 827, 1029, 1082
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 3 cut(s) 432, 481, 1375
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 2 cut(s) 321, 1208
XapI RAATTY 4 cut(s) 105, 493, 817, 928
XceI RCATGY 1 cut(s) 944
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.