Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003730

Physical Location & Seq

Genomic Coordinates Reverse (-)

56463810 .. 56465893

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0398900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGCATCACTGGCTGTCCAGATAACCCCAGTCTCTCACCCAAAAGCTCAAGCTCACACTCACTCCCCAATCTCTCTCATCCCTAAATGCACCTCTCTCACAGAACTCCAGCAAATCCACGCCTTGTCCATCAAAACCCATCTCCAATATGACTTCTCTGTCCTCGCCAAGCTCATCAACTCCTGCACAATCAACCCAACTAGACACTCCATGGACTATGCCCACCACCTGTTCCACCAAATTCCCCACCCGGACATTGTCGTCTTCAACACCATGGCACGTGGTTACTCACGCTCCGATACCCCATTTCGCGCCATTTCACTCTTTTCCCAGGTTCTATCCTCAGGTCTCTTCCCAGATGACTACACATTCCCGGCTCTTCTCAAGGCTTGCGCCGGCTCTAAAGCCTTAGAAGAAGGGAAGCAGTTGCATTGCTATGTTATCAAATATGGAATGCAACTTAGCATATTCGTGTGTCCTGCTCTTACAAATATGTACACTGAGTGCAGTGATGTGGATGCAGCTCGCCGGCTATTTGATAAGATACCGGACCCTTGTGTTGTTGTGCATAATGCTATGATCACAGGGTATGCTAGAAACAGTCGGCCTAATGAGGCATTGGCATTGTTTCGAGAGTTGCAAGCAAGTGGTCTTAAGCCAACCGATGTTACTATGCTTAGTGCTCTTTCGTCGTGTGCTTTGTTAGGTGCTTTGGACTTGGGGAAGTGGATACATGAGTATGTTAAGAAGAATAGGTTTGATAGATATGTTAAAGTGAACACTGCATTAATAGATATGTATTCAAAGTGTGGGAGCCTGGAGGATGCAGTGTCTGTGTTTGAGAACATGAGTGTGAAAGATACACAGGCTTGGTCTGCAATGATTGTGGCGTATGCAACGCATGGGAATGTTTCCAAAGCTATATCGATGTTTGAAGAGATGAAGAAGGCACGAATTCGACCTGATGAGATCACATTTCTGGGACTCTTATATGCGTGTAGTCATGCTGGATTGGTTGAGGAGGGTTGCAAGTATTTCTACAGCATGAGTGAGAACTATGGGATTATACCCAGGATTAAGCATTATGGGTGTGTGGTGGATTTGCTAGGTCGGGCTGGACGTTTAGGGGAGGCTTACAAGTTCATAGTTGAGCTACCAATTAAGCCTACGCCTATAATCTGGCGAACATTGTTATCTGCTTGTTGCAGTCATGGTGATGTAGACATGGGGATGCGGGTGCTTGAGCAAATTTTTGAGTTAGATGACTCTCATGGTGGGGATTATGTGATCATATCTAACTTGTGTGCAAGAGCAGGAAGATGGGAGGATGTTGATTACTTGAGGAAACTGATGAAAGACAGAGGCATTGTAAAGATTCCCGGGTGTAGCGCCATAGAGATGAACAATGTAGTGCATGAATTCTTCTCTGGGGATGGCGAGCGTTCTGTTTCCAAAGTACTGCATCAGGCAGTTGATGAGTTGATTGAAGAATTAAAGCTGGCCGGATATGTTCCAGATACTTCTTTAGTATTTCATTCTGACATGGATGATAGAGATAGAGAGCTTTCTCTTAGATATCATAGTGAGAAATTAGCCATTACTTATGGGCTCTTAAACACAGCTGCTGGGACAACAATTCGAGTGGTGAAGAACCTTAGGGTATGTGGGGATTGCCACTCTGCTGCTAAATACATATCATTGATCTTTAATAGACAAATAGTTCTTAGAGATGTTCAACGGTTCCATCATTTCAAAGATGGCAAGTGTTCTTGTGGGGACTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008081 GO:0008150 GO:0008152 GO:0009987 GO:0016604 GO:0016605 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0070259 GO:0070260 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos zf-RanBP

Protein Analysis

595

Amino Acids

66.67

Weight (kDa)

7.1

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	84 - 132	3.7e-07	PPR repeat family
PPR_2	PF13041	185 - 232	9.6e-09	PPR repeat family
PPR	PF01535	188 - 218	7.2e-06	PPR repeat
PPR_2	PF13041	287 - 334	2.1e-10	PPR repeat family
PPR	PF01535	290 - 318	1.9e-06	PPR repeat
E_motif	PF20431	404 - 466	4.2e-17	E motif
DYW_deaminase	PF14432	502 - 595	7.8e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11800
fragaria_vesca	FvH4_3g01860 FvH4_3g01880 FvH4_3g01880 FvH4_3g01880
malus_domestica	MD05G1348300.v1.1 MD10G1323100.v1.1 MD10G1323300.v1.1
prunus_persica	Prupe.4G019000_v2.0.a1 Prupe.4G019000_v2.0.a1 Prupe.4G019100_v2.0.a1
pyrus_communis	pycom05g31580 pycom10g27350 pycom10g27360
rosa_chinensis	RchiOBHm_Chr5g0002731 RchiOBHm_Chr5g0002751
rosa_laevigata	RLG00000031055
rosa_multiflora	Rmu_sc0013603.1_g000021 Rmu_sc0022235.1_g000001 Rmu_sc0042337.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073150
rosa_rugosa	Rorug04G0398800 Rorug04G0398900 Rorug04G0399000
rosa_samantha	Rh5AG022000 Rh5AG022100 Rh5BG024900 Rh5BG025000 Rh5CG024300 Rh5CG024400 Rh5DG023300 Rh5DG023400
rosa_wichuraiana	Rw5G002050 Rw5G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	158, 260
AccI	GTMKAC	1 cut(s)	1221
AccII	CGCG	1 cut(s)	312
AciI	CCGC	1 cut(s)	1234
AcoI	YGGCCR	1 cut(s)	1500
AcsI	RAATTY	4 cut(s)	240, 954, 1248, 1418
AcvI	CACGTG	1 cut(s)	281
AdeI	CACNNNGTG	1 cut(s)	504
AfaI	GTAC	2 cut(s)	497, 1458
AflII	CTTAAG	1 cut(s)	653
AgsI	TTSAA	6 cut(s)	268, 804, 935, 1487, 1736, 1753
AjnI	CCWGG	3 cut(s)	330, 816, 1070
AluBI	AGCT	9 cut(s)	47, 53, 172, 524, 920, 1153, 1498, 1564, 1622
AluI	AGCT	9 cut(s)	47, 53, 172, 524, 920, 1153, 1498, 1564, 1622
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	2 cut(s)	37, 353
AlwNI	CAGNNNCTG	2 cut(s)	833, 1625
Ama87I	CYCGRG	1 cut(s)	1379
AoxI	GGCC	2 cut(s)	605, 1500
ApeKI	GCWGC	3 cut(s)	521, 1622, 1682
ApoI	RAATTY	4 cut(s)	240, 954, 1248, 1418
AseI	ATTAAT	1 cut(s)	788
AspLEI	GCGC	3 cut(s)	314, 395, 1391
AspS9I	GGNCC	1 cut(s)	550
AsuC2I	CCSGG	4 cut(s)	251, 374, 1380, 1381
AsuHPI	GGTGA	3 cut(s)	29, 1226, 1657
AvaI	CYCGRG	1 cut(s)	1379
AvaII	GGWCC	1 cut(s)	550
AxyI	CCTNAGG	2 cut(s)	343, 1655
BaeI	ACNNNNGTAYC	2 cut(s)	722, 755
BanII	GRGCYC	1 cut(s)	1611
BbrPI	CACGTG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	3 cut(s)	533, 1609, 1669
BccI	CCATC	6 cut(s)	137, 147, 1314, 1427, 1751, 1752
BciT130I	CCWGG	3 cut(s)	332, 818, 1072
BciVI	GTATCC	1 cut(s)	723
BclI	TGATCA	2 cut(s)	579, 1287
BcnI	CCSGG	4 cut(s)	251, 374, 1380, 1381
BcoDI	GTCTC	2 cut(s)	37, 353
BfaI	CTAG	3 cut(s)	201, 594, 1106
BfmI	CTRYAG	1 cut(s)	1039
BfoI	RGCGCY	1 cut(s)	1392
BfrI	CTTAAG	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	723
BisI	GCNGC	3 cut(s)	522, 1623, 1683
BlsI	GCNGC	3 cut(s)	523, 1624, 1684
BmcAI	AGTACT	1 cut(s)	1458
Bme1390I	CCNGG	7 cut(s)	251, 332, 374, 818, 1072, 1380, 1381
Bme18I	GGWCC	1 cut(s)	550
BmeT110I	CYCGRG	1 cut(s)	1379
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	552, 815, 1742
BmrFI	CCNGG	7 cut(s)	251, 332, 374, 818, 1072, 1380, 1381
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	5 cut(s)	14, 508, 814, 1221, 1471
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	2 cut(s)	92, 839
BpuEI	CTTGAG	4 cut(s)	33, 368, 1262, 1360
BpuMI	CCSGG	4 cut(s)	251, 374, 1380, 1381
Bsa29I	ATCGAT	1 cut(s)	926
BsaAI	YACGTR	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	5 cut(s)	210, 273, 330, 1070, 1379
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 278, 308
Bse118I	RCCGGY	2 cut(s)	395, 528
Bse1I	ACTGG	2 cut(s)	15, 29
Bse21I	CCTNAGG	2 cut(s)	343, 1655
Bse3DI	GCAATG	2 cut(s)	430, 885
BseBI	CCWGG	3 cut(s)	332, 818, 1072
BseCI	ATCGAT	1 cut(s)	926
BseDI	CCNNGG	5 cut(s)	210, 273, 330, 1070, 1379
BseGI	GGATG	7 cut(s)	78, 523, 829, 1236, 1333, 1438, 1552
BseMI	GCAATG	2 cut(s)	430, 885
BseMII	CTCAG	2 cut(s)	357, 492
BseNI	ACTGG	2 cut(s)	15, 29
BseRI	GAGGAG	1 cut(s)	1034
BseXI	GCAGC	3 cut(s)	533, 1609, 1669
BseYI	CCCAGC	1 cut(s)	1625
BsgI	GTGCAG	2 cut(s)	169, 526
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	607, 1502
BshVI	ATCGAT	1 cut(s)	926
BsiHKAI	GWGCWC	1 cut(s)	685
BsiHKCI	CYCGRG	1 cut(s)	1379
BsiSI	CCGG	7 cut(s)	251, 374, 396, 529, 548, 1380, 1503
BslFI	GGGAC	2 cut(s)	996, 1642
BsmAI	GTCTC	2 cut(s)	37, 353
BsmFI	GGGAC	2 cut(s)	996, 1642
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	607, 1502
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	1379
Bsp1286I	GDGCHC	2 cut(s)	685, 1611
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	4 cut(s)	579, 969, 1287, 1701
Bsp19I	CCATGG	2 cut(s)	210, 273
BspACI	CCGC	1 cut(s)	1234
BspANI	GGCC	2 cut(s)	607, 1502
BspCNI	CTCAG	2 cut(s)	356, 493
BspDI	ATCGAT	1 cut(s)	926
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	552, 815, 1742
BspQI	GCTCTTC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	430, 885
BsrFI	RCCGGY	2 cut(s)	395, 528
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	15, 29
BssAI	RCCGGY	2 cut(s)	395, 528
BssECI	CCNNGG	5 cut(s)	210, 273, 330, 1070, 1379
BssMI	GATC	4 cut(s)	579, 969, 1287, 1701
BssT1I	CCWWGG	2 cut(s)	210, 273
Bst2UI	CCWGG	3 cut(s)	332, 818, 1072
Bst4CI	ACNGT	2 cut(s)	602, 1740
Bst6I	CTCTTC	3 cut(s)	356, 384, 930
BstAFI	CTTAAG	1 cut(s)	653
BstAUI	TGTACA	1 cut(s)	495
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	7 cut(s)	391, 397, 526, 530, 642, 1439, 1500
BstDEI	CTNAG	8 cut(s)	343, 409, 461, 501, 677, 1571, 1655, 1724
BstDSI	CCRYGG	2 cut(s)	210, 273
BstF5I	GGATG	7 cut(s)	78, 523, 829, 1236, 1333, 1438, 1552
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	1392
BstHHI	GCGC	3 cut(s)	314, 395, 1391
BstKTI	GATC	4 cut(s)	582, 972, 1290, 1704
BstMAI	GTCTC	2 cut(s)	37, 353
BstMBI	GATC	4 cut(s)	579, 969, 1287, 1701
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 875
BstNI	CCWGG	3 cut(s)	332, 818, 1072
BstSCI	CCNGG	7 cut(s)	249, 330, 372, 816, 1070, 1378, 1379
BstSFI	CTRYAG	1 cut(s)	1039
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	533, 1609, 1669
BstV2I	GAAGAC	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	926
Bsu36I	CCTNAGG	2 cut(s)	343, 1655
BsuI	GTATCC	1 cut(s)	723
BsuRI	GGCC	2 cut(s)	607, 1502
BsuTUI	ATCGAT	1 cut(s)	926
BtgI	CCRYGG	2 cut(s)	210, 273
BtsCI	GGATG	7 cut(s)	78, 523, 829, 1236, 1333, 1438, 1552
BtsI	GCAGTG	3 cut(s)	514, 780, 834
BtsIMutI	CAGTG	5 cut(s)	8, 498, 514, 780, 834
Cac8I	GCNNGC	7 cut(s)	391, 397, 526, 530, 642, 1439, 1500
CaiI	CAGNNNCTG	2 cut(s)	833, 1625
CfoI	GCGC	3 cut(s)	314, 395, 1391
Cfr10I	RCCGGY	2 cut(s)	395, 528
Cfr13I	GGNCC	1 cut(s)	550
Cfr9I	CCCGGG	1 cut(s)	1379
ClaI	ATCGAT	1 cut(s)	926
Csp6I	GTAC	2 cut(s)	496, 1457
CspCI	CAANNNNNGTGG	4 cut(s)	867, 902, 1623, 1658
CviQI	GTAC	2 cut(s)	496, 1457
DdeI	CTNAG	8 cut(s)	343, 409, 461, 501, 677, 1571, 1655, 1724
DpnI	GATC	4 cut(s)	581, 971, 1289, 1703
DpnII	GATC	4 cut(s)	579, 969, 1287, 1701
DraIII	CACNNNGTG	1 cut(s)	504
DrdI	GACNNNNNNGTC	2 cut(s)	158, 260
DseDI	GACNNNNNNGTC	2 cut(s)	158, 260
EaeI	YGGCCR	1 cut(s)	1500
Eam1104I	CTCTTC	3 cut(s)	356, 384, 930
EarI	CTCTTC	3 cut(s)	356, 384, 930
Eco130I	CCWWGG	2 cut(s)	210, 273
Eco24I	GRGCYC	1 cut(s)	1611
Eco31I	GGTCTC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	1577
Eco47I	GGWCC	1 cut(s)	550
Eco72I	CACGTG	1 cut(s)	281
Eco81I	CCTNAGG	2 cut(s)	343, 1655
Eco88I	CYCGRG	1 cut(s)	1379
EcoRI	GAATTC	2 cut(s)	954, 1418
EcoRII	CCWGG	3 cut(s)	330, 816, 1070
EcoRV	GATATC	1 cut(s)	1577
EcoT14I	CCWWGG	2 cut(s)	210, 273
EcoT38I	GRGCYC	1 cut(s)	1611
ErhI	CCWWGG	2 cut(s)	210, 273
FaqI	GGGAC	2 cut(s)	996, 1642
FauI	CCCGC	1 cut(s)	1227
FbaI	TGATCA	2 cut(s)	579, 1287
FblI	GTMKAC	1 cut(s)	1221
Fnu4HI	GCNGC	3 cut(s)	522, 1623, 1683
FokI	GGATG	7 cut(s)	65, 530, 836, 1243, 1340, 1445, 1559
FriOI	GRGCYC	1 cut(s)	1611
Fsp4HI	GCNGC	3 cut(s)	522, 1623, 1683
FspBI	CTAG	3 cut(s)	201, 594, 1106
GlaI	GCGC	3 cut(s)	313, 394, 1390
GluI	GCNGC	3 cut(s)	522, 1623, 1683
GsaI	CCCAGC	1 cut(s)	1629
GsuI	CTGGAG	2 cut(s)	92, 839
HaeII	RGCGCY	1 cut(s)	1392
HaeIII	GGCC	2 cut(s)	607, 1502
HapII	CCGG	7 cut(s)	251, 374, 396, 529, 548, 1380, 1503
HhaI	GCGC	3 cut(s)	314, 395, 1391
Hin6I	GCGC	3 cut(s)	312, 393, 1389
HinP1I	GCGC	3 cut(s)	312, 393, 1389
HinfI	GANTC	3 cut(s)	984, 1265, 1375
HpaII	CCGG	7 cut(s)	251, 374, 396, 529, 548, 1380, 1503
HphI	GGTGA	3 cut(s)	29, 1226, 1657
Hpy166II	GTNNAC	3 cut(s)	498, 778, 1222
Hpy188I	TCNGA	2 cut(s)	298, 1540
Hpy188III	TCNNGA	3 cut(s)	19, 632, 1514
Hpy8I	GTNNAC	3 cut(s)	498, 778, 1222
Hpy99I	CGWCG	1 cut(s)	694
HpyAV	CCTTC	2 cut(s)	410, 940
HpyCH4III	ACNGT	2 cut(s)	602, 1740
HpyCH4IV	ACGT	2 cut(s)	280, 1120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 875
HpyF3I	CTNAG	8 cut(s)	343, 409, 461, 501, 677, 1571, 1655, 1724
HpySE526I	ACGT	2 cut(s)	280, 1120
HspAI	GCGC	3 cut(s)	312, 393, 1389
KroI	GCCGGC	2 cut(s)	395, 528
KroNI	GCCGGC	2 cut(s)	397, 530
Ksp22I	TGATCA	2 cut(s)	579, 1287
Kzo9I	GATC	4 cut(s)	579, 969, 1287, 1701
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	299, 813
Lsp1109I	GCAGC	3 cut(s)	533, 1609, 1669
LweI	GCATC	5 cut(s)	14, 508, 814, 1221, 1471
MaeI	CTAG	3 cut(s)	201, 594, 1106
MaeII	ACGT	2 cut(s)	280, 1120
MaeIII	GTNAC	2 cut(s)	284, 667
MalI	GATC	4 cut(s)	581, 971, 1289, 1703
MboI	GATC	4 cut(s)	579, 969, 1287, 1701
MhlI	GDGCHC	2 cut(s)	685, 1611
MluCI	AATT	8 cut(s)	240, 954, 1158, 1248, 1418, 1490, 1589, 1635
MlyI	GAGTC	2 cut(s)	978, 1259
MroNI	GCCGGC	2 cut(s)	395, 528
MseI	TTAA	9 cut(s)	654, 744, 771, 788, 1077, 1161, 1493, 1613, 1707
MslI	CAYNNNNRTG	8 cut(s)	435, 470, 738, 851, 906, 1215, 1229, 1397
MspA1I	CMGCKG	1 cut(s)	1622
MspCI	CTTAAG	1 cut(s)	653
MspI	CCGG	7 cut(s)	251, 374, 396, 529, 548, 1380, 1503
MspR9I	CCNGG	7 cut(s)	251, 332, 374, 818, 1072, 1380, 1381
Mva1269I	GAATGC	1 cut(s)	459
MvaI	CCWGG	3 cut(s)	332, 818, 1072
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	11, 875
NaeI	GCCGGC	2 cut(s)	397, 530
NciI	CCSGG	4 cut(s)	251, 374, 1380, 1381
NcoI	CCATGG	2 cut(s)	210, 273
NdeII	GATC	4 cut(s)	579, 969, 1287, 1701
NgoMIV	GCCGGC	2 cut(s)	395, 528
NlaIV	GGNNCC	3 cut(s)	552, 815, 1742
PciSI	GCTCTTC	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	1117
PctI	GAATGC	1 cut(s)	459
PdiI	GCCGGC	2 cut(s)	397, 530
PfeI	GAWTC	1 cut(s)	1375
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	523, 1624, 1684
PleI	GAGTC	2 cut(s)	978, 1259
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
PpsI	GAGTC	2 cut(s)	978, 1259
Ppu21I	YACGTR	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	330, 816, 1070
PspCI	CACGTG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	1625
PspGI	CCWGG	3 cut(s)	330, 816, 1070
PspN4I	GGNNCC	3 cut(s)	552, 815, 1742
PspPI	GGNCC	1 cut(s)	550
PstNI	CAGNNNCTG	2 cut(s)	833, 1625
PsyI	GACNNNGTC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	1622
RsaI	GTAC	2 cut(s)	497, 1458
RsaNI	GTAC	2 cut(s)	496, 1457
RseI	CAYNNNNRTG	8 cut(s)	435, 470, 738, 851, 906, 1215, 1229, 1397
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	9 cut(s)	654, 744, 771, 788, 1077, 1161, 1493, 1613, 1707
SatI	GCNGC	3 cut(s)	522, 1623, 1683
Sau3AI	GATC	4 cut(s)	579, 969, 1287, 1701
Sau96I	GGNCC	1 cut(s)	550
ScaI	AGTACT	1 cut(s)	1458
SchI	GAGTC	2 cut(s)	978, 1259
ScrFI	CCNGG	7 cut(s)	251, 332, 374, 818, 1072, 1380, 1381
SduI	GDGCHC	2 cut(s)	685, 1611
SfaNI	GCATC	5 cut(s)	14, 508, 814, 1221, 1471
SfcI	CTRYAG	1 cut(s)	1039
SinI	GGWCC	1 cut(s)	550
SmaI	CCCGGG	1 cut(s)	1381
SmiMI	CAYNNNNRTG	8 cut(s)	435, 470, 738, 851, 906, 1215, 1229, 1397
SmlI	CTYRAG	5 cut(s)	48, 383, 653, 1241, 1339
SmoI	CTYRAG	5 cut(s)	48, 383, 653, 1241, 1339
Sse9I	AATT	8 cut(s)	240, 954, 1158, 1248, 1418, 1490, 1589, 1635
SsiI	CCGC	1 cut(s)	1234
SspMI	CTAG	3 cut(s)	201, 594, 1106
StyD4I	CCNGG	7 cut(s)	249, 330, 372, 816, 1070, 1378, 1379
StyI	CCWWGG	2 cut(s)	210, 273
TaaI	ACNGT	2 cut(s)	602, 1740
TaiI	ACGT	2 cut(s)	283, 1123
TaqI	TCGA	4 cut(s)	631, 926, 958, 1639
TasI	AATT	8 cut(s)	240, 954, 1158, 1248, 1418, 1490, 1589, 1635
TatI	WGTACW	2 cut(s)	495, 1456
TfiI	GAWTC	1 cut(s)	1375
Tru1I	TTAA	9 cut(s)	654, 744, 771, 788, 1077, 1161, 1493, 1613, 1707
Tru9I	TTAA	9 cut(s)	654, 744, 771, 788, 1077, 1161, 1493, 1613, 1707
TscAI	CASTG	5 cut(s)	15, 505, 514, 787, 834
TseI	GCWGC	3 cut(s)	521, 1622, 1682
TspDTI	ATGAA	6 cut(s)	956, 1132, 1367, 1415, 1431, 1523
TspMI	CCCGGG	1 cut(s)	1379
TspRI	CASTG	5 cut(s)	15, 505, 514, 787, 834
Tth111I	GACNNNGTC	1 cut(s)	257
Vha464I	CTTAAG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	550
VspI	ATTAAT	1 cut(s)	788
XapI	RAATTY	4 cut(s)	240, 954, 1248, 1418
XmaI	CCCGGG	1 cut(s)	1379
XmiI	GTMKAC	1 cut(s)	1221
XspI	CTAG	3 cut(s)	201, 594, 1106
ZrmI	AGTACT	1 cut(s)	1458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.