Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003730

Physical Location & Seq

Genomic Coordinates Reverse (-)

56462069 .. 56463244

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0398800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAAATGAAATTCAACCCCTCACCATTCATTTGGCTTTTGATAATACAAAGTCTAGCAGTACTTGGCGTTTCTCAGGATCATGATTTTTTCTATCTCGTACAACAGTGGCCAGGATCCTACGGTGGCCCTCAGCACAATATTTGCTATCTGACTACAGGAAAACCTGCACAAAGTTTCATTATCGGTGGCTTTCGGCCCAATTTTATCGATGGTTCAATCCCAACAACCTACTGCGATCCCAACAACCCCTTCAATGAAACAAAGGTGTCAGGGATAATCGACGATTTGCAAAAATATTGGCCATTGGCTGGCCTGCCCGAGCAGCAACGAGATATCTTGAAAGACATCCACGGATACCTTCAAGATTATGGAATCCGACCAGATGGGACAGCGTACAACTTAAACACCCTAAAATATTATCTGAGAAAATCATTTCTCGGCCTCAATATAGGGATAGAATACAATGAAGATGCATCTGGAAATAGCCAGTATTACCAGATTCATATTTGTATAGACCCTTCTGGTAAATTCATGATTAAGTGTCCAGTGCTGGCCGATGAGAAATGTGCCGATAGCTTTGTGTTTCCTTCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008081 GO:0008150 GO:0008152 GO:0009987 GO:0016604 GO:0016605 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0070259 GO:0070260 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos zf-RanBP

Protein Analysis

199

Amino Acids

22.59

Weight (kDa)

5.06

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	29 - 103	1.5e-12	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11800
fragaria_vesca	FvH4_3g01860 FvH4_3g01880 FvH4_3g01880 FvH4_3g01880
malus_domestica	MD05G1348300.v1.1 MD10G1323100.v1.1 MD10G1323300.v1.1
prunus_persica	Prupe.4G019000_v2.0.a1 Prupe.4G019000_v2.0.a1 Prupe.4G019100_v2.0.a1
pyrus_communis	pycom05g31580 pycom10g27350 pycom10g27360
rosa_chinensis	RchiOBHm_Chr5g0002731 RchiOBHm_Chr5g0002751
rosa_laevigata	RLG00000031055
rosa_multiflora	Rmu_sc0013603.1_g000021 Rmu_sc0022235.1_g000001 Rmu_sc0042337.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073150
rosa_rugosa	Rorug04G0398800 Rorug04G0398900 Rorug04G0399000
rosa_samantha	Rh5AG022000 Rh5AG022100 Rh5BG024900 Rh5BG025000 Rh5CG024300 Rh5CG024400 Rh5DG023300 Rh5DG023400
rosa_wichuraiana	Rw5G002050 Rw5G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	311
AclWI	GGATC	4 cut(s)	87, 111, 124, 233
AcoI	YGGCCR	3 cut(s)	110, 302, 555
AcsI	RAATTY	2 cut(s)	11, 530
AfaI	GTAC	3 cut(s)	63, 102, 398
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	5 cut(s)	16, 219, 256, 343, 365
AjnI	CCWGG	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	1 cut(s)	579
AluI	AGCT	1 cut(s)	579
AlwI	GGATC	4 cut(s)	87, 111, 124, 233
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	7 cut(s)	110, 127, 197, 302, 313, 442, 555
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	2 cut(s)	11, 530
AspS9I	GGNCC	2 cut(s)	128, 198
AsuHPI	GGTGA	1 cut(s)	15
AvaI	CYCGRG	1 cut(s)	320
BalI	TGGCCA	2 cut(s)	112, 304
BamHI	GGATCC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	505, 537
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	206, 380
BciT130I	CCWGG	1 cut(s)	114
BciVI	GTATCC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	56, 598
BfmI	CTRYAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	128, 198
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	463, 485
Bpu10I	CCTNAGC	1 cut(s)	132
Bsa29I	ATCGAT	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	2 cut(s)	490, 548
BseBI	CCWGG	1 cut(s)	114
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	3 cut(s)	89, 146, 416
BseNI	ACTGG	2 cut(s)	490, 548
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	7 cut(s)	112, 129, 199, 304, 315, 444, 557
BshVI	ATCGAT	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	7 cut(s)	112, 129, 199, 304, 315, 444, 557
BsoBI	CYCGRG	1 cut(s)	320
Bsp143I	GATC	3 cut(s)	79, 116, 238
BspANI	GGCC	7 cut(s)	112, 129, 199, 304, 315, 444, 557
BspCNI	CTCAG	3 cut(s)	88, 145, 417
BspDI	ATCGAT	1 cut(s)	210
BspHI	TCATGA	2 cut(s)	82, 534
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	4 cut(s)	87, 111, 124, 233
BsrI	ACTGG	2 cut(s)	490, 548
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	3 cut(s)	79, 116, 238
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	108, 125
BstC8I	GCNNGC	3 cut(s)	313, 317, 555
BstDEI	CTNAG	3 cut(s)	75, 132, 425
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	3 cut(s)	82, 119, 241
BstMBI	GATC	3 cut(s)	79, 116, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	7 cut(s)	112, 129, 199, 304, 315, 444, 557
BsuTUI	ATCGAT	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	113, 555
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	3 cut(s)	313, 317, 555
CciI	TCATGA	2 cut(s)	82, 534
Cfr13I	GGNCC	2 cut(s)	128, 198
ClaI	ATCGAT	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	62, 101, 397
CviAII	CATG	2 cut(s)	83, 535
CviQI	GTAC	3 cut(s)	62, 101, 397
DdeI	CTNAG	3 cut(s)	75, 132, 425
DpnI	GATC	3 cut(s)	81, 118, 240
DpnII	GATC	3 cut(s)	79, 116, 238
EaeI	YGGCCR	3 cut(s)	110, 302, 555
Eco32I	GATATC	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	478
FaeI	CATG	2 cut(s)	86, 538
FaiI	YATR	6 cut(s)	84, 372, 452, 507, 515, 536
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	2 cut(s)	82, 534
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	2 cut(s)	56, 598
GluI	GCNGC	1 cut(s)	326
HaeIII	GGCC	7 cut(s)	112, 129, 199, 304, 315, 444, 557
Hin1II	CATG	2 cut(s)	86, 538
HinfI	GANTC	2 cut(s)	375, 502
HphI	GGTGA	1 cut(s)	15
Hpy188I	TCNGA	3 cut(s)	153, 380, 426
Hpy188III	TCNNGA	6 cut(s)	77, 83, 340, 365, 480, 535
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	4 cut(s)	262, 371, 531, 600
HpyCH4III	ACNGT	2 cut(s)	108, 125
HpyCH4V	TGCA	3 cut(s)	170, 292, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	3 cut(s)	75, 132, 425
Hsp92II	CATG	2 cut(s)	86, 538
Kzo9I	GATC	3 cut(s)	79, 116, 238
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	463, 485
MaeI	CTAG	2 cut(s)	56, 598
MalI	GATC	3 cut(s)	81, 118, 240
MboI	GATC	3 cut(s)	79, 116, 238
MboII	GAAGA	1 cut(s)	482
MflI	RGATCY	1 cut(s)	116
MlsI	TGGCCA	2 cut(s)	112, 304
MluCI	AATT	3 cut(s)	11, 202, 530
MluNI	TGGCCA	2 cut(s)	112, 304
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	3 cut(s)	31, 141, 455
Mox20I	TGGCCA	2 cut(s)	112, 304
Mph1103I	ATGCAT	1 cut(s)	478
MscI	TGGCCA	2 cut(s)	112, 304
MseI	TTAA	2 cut(s)	404, 540
Msp20I	TGGCCA	2 cut(s)	112, 304
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	3 cut(s)	79, 116, 238
NlaIII	CATG	2 cut(s)	86, 538
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	478
PagI	TCATGA	2 cut(s)	82, 534
PfeI	GAWTC	2 cut(s)	375, 502
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	128, 198
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	3 cut(s)	63, 102, 398
RsaNI	GTAC	3 cut(s)	62, 101, 397
SaqAI	TTAA	2 cut(s)	404, 540
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	3 cut(s)	79, 116, 238
Sau96I	GGNCC	2 cut(s)	128, 198
ScaI	AGTACT	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	5 cut(s)	169, 233, 270, 363, 581
SfaNI	GCATC	2 cut(s)	463, 485
SfcI	CTRYAG	1 cut(s)	156
Sse9I	AATT	3 cut(s)	11, 202, 530
SspI	AATATT	3 cut(s)	142, 299, 419
SspMI	CTAG	2 cut(s)	56, 598
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	108, 125
TaqI	TCGA	2 cut(s)	210, 282
TasI	AATT	3 cut(s)	11, 202, 530
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	375, 502
Tru1I	TTAA	2 cut(s)	404, 540
Tru9I	TTAA	2 cut(s)	404, 540
TscAI	CASTG	2 cut(s)	113, 555
TseI	GCWGC	1 cut(s)	325
TspDTI	ATGAA	7 cut(s)	19, 23, 169, 273, 483, 494, 523
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	2 cut(s)	113, 555
Van91I	CCANNNNNTGG	1 cut(s)	311
XapI	RAATTY	2 cut(s)	11, 530
XspI	CTAG	2 cut(s)	56, 598
ZrmI	AGTACT	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.